Wall clock time and date at job start Tue Mar 31 2020 13:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 N 1.46496 * 109.46895 * 180.02562 * 8 6 5 10 10 C 1.45753 * 117.94917 * 269.74019 * 9 8 6 11 11 C 1.53096 * 110.39206 * 160.74520 * 10 9 8 12 12 C 1.53351 * 108.52642 * 51.11305 * 11 10 9 13 13 C 1.53070 * 108.42687 * 292.30886 * 12 11 10 14 14 C 1.33356 * 117.94816 * 90.00205 * 9 8 6 15 15 O 1.21279 * 118.24494 * 2.24234 * 14 9 8 16 16 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 17 17 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 18 18 C 1.46500 * 125.97897 * 359.96594 * 17 2 1 19 19 C 1.50698 * 109.46965 * 89.99833 * 18 17 2 20 20 H 1.08000 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99358 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47086 * 60.00203 * 23 21 19 25 25 H 1.48506 * 109.46840 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47109 * 299.99717 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 30 30 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 31 31 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 32 32 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 33 33 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 34 34 H 1.09003 * 109.30125 * 281.24067 * 10 9 8 35 35 H 1.09000 * 109.30126 * 40.60860 * 10 9 8 36 36 H 1.09007 * 109.80828 * 291.32846 * 11 10 9 37 37 H 1.08997 * 109.67993 * 170.82658 * 11 10 9 38 38 H 1.09004 * 109.67211 * 172.58293 * 12 11 10 39 39 H 1.09001 * 109.70337 * 52.06412 * 12 11 10 40 40 H 1.09003 * 109.40378 * 288.77714 * 13 12 11 41 41 H 1.08990 * 109.33233 * 168.98234 * 13 12 11 42 42 H 1.08994 * 109.46840 * 210.00162 * 18 17 2 43 43 H 1.09004 * 109.46443 * 329.99889 * 18 17 2 44 44 H 0.96998 * 120.00265 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 7 5.4462 5.1033 0.0298 10 6 5.2594 5.7684 -1.2537 11 6 4.3972 7.0221 -1.0843 12 6 4.9882 7.8706 0.0482 13 6 4.8030 7.1147 1.3663 14 6 5.2703 5.6958 1.2115 15 8 5.5003 5.0546 2.2149 16 7 3.6337 -0.6577 -0.0036 17 7 2.3016 -1.0910 -0.0059 18 6 1.8500 -2.4847 -0.0128 19 6 1.6945 -2.9553 -1.4359 20 1 1.9108 -2.2836 -2.2535 21 6 1.2760 -4.2434 -1.6941 22 7 1.0121 -5.0611 -0.6985 23 14 1.0838 -4.8270 -3.4582 24 1 2.3899 -4.7272 -4.1577 25 1 0.6247 -6.2393 -3.4651 26 1 0.0833 -3.9785 -4.1541 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1210 -0.0006 31 1 5.6584 1.0776 0.0055 32 1 6.4538 3.4885 0.9100 33 1 6.4541 3.4989 -0.8699 34 1 6.2317 6.0476 -1.6597 35 1 4.7665 5.0850 -1.9452 36 1 3.3757 6.7367 -0.8326 37 1 4.3987 7.5965 -2.0107 38 1 4.4696 8.8280 0.0984 39 1 6.0500 8.0374 -0.1332 40 1 3.7485 7.1205 1.6420 41 1 5.3844 7.6040 2.1476 42 1 2.5849 -3.1072 0.4976 43 1 0.8916 -2.5584 0.5012 44 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271106652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:05 Heat of formation + Delta-G solvation = 6.010155 kcal Electronic energy + Delta-G solvation = -26682.848002 eV Core-core repulsion = 22829.911169 eV Total energy + Delta-G solvation = -3852.936833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06988 -40.49744 -38.96458 -36.70144 -34.87190 -34.30415 -33.37499 -31.48071 -30.87960 -29.99539 -28.42195 -26.51961 -26.30336 -24.74725 -23.27142 -22.62154 -21.36983 -19.80645 -19.30995 -18.84635 -17.03463 -17.01676 -16.79373 -16.67141 -16.02479 -15.62373 -15.23392 -15.12978 -14.53825 -14.43923 -14.27551 -14.07033 -13.87314 -13.62791 -13.39718 -12.96472 -12.53544 -12.47762 -12.31987 -12.11023 -11.95266 -11.67332 -11.63180 -11.41445 -11.34344 -11.31989 -11.08744 -10.82876 -10.45913 -10.25237 -10.01541 -9.90817 -9.71826 -9.53964 -8.93926 -8.64652 -7.93102 -7.45087 -6.25782 -4.33770 2.27416 2.34058 2.61190 2.90221 3.00063 3.22493 3.26450 3.30666 3.72192 3.88657 4.24313 4.29612 4.35643 4.39346 4.45375 4.66694 4.83904 4.98563 5.07559 5.08797 5.11590 5.22329 5.36411 5.44381 5.46274 5.51095 5.57053 5.71928 5.83369 5.94645 5.98082 6.10055 6.25032 6.47167 6.56459 6.73331 6.93419 7.05456 7.16387 7.45468 7.64205 7.66852 7.88633 7.93766 8.05800 8.25549 8.65499 8.74712 9.32493 10.81415 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.002492 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.891519 B =11233.998971 C =11343.385577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.264 3.736 5 N -0.630 5.630 6 C 0.504 3.496 7 O -0.509 6.509 8 C 0.092 3.908 9 N -0.585 5.585 10 C 0.115 3.885 11 C -0.136 4.136 12 C -0.123 4.123 13 C -0.132 4.132 14 C 0.523 3.477 15 O -0.551 6.551 16 N -0.320 5.320 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.410 0.590 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 24.298 -0.954 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.011 3.989 5 N -0.278 5.278 6 C 0.288 3.712 7 O -0.382 6.382 8 C -0.035 4.035 9 N -0.317 5.317 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.161 4.161 13 C -0.172 4.172 14 C 0.312 3.688 15 O -0.429 6.429 16 N -0.151 5.151 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.175 0.825 31 H 0.246 0.754 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.263 23.022 -0.377 24.463 hybrid contribution -0.116 -0.139 -1.041 1.056 sum 8.147 22.883 -1.418 24.331 Atomic orbital electron populations 1.20375 0.87944 1.03816 1.02538 1.21059 0.94905 0.87158 1.00898 1.21217 0.89779 0.99693 1.21342 1.18993 0.87239 0.89579 1.03065 1.42448 1.07596 1.05048 1.72738 1.21106 0.92008 0.81704 0.76413 1.90635 1.26602 1.73777 1.47154 1.21278 0.94662 0.81324 1.06219 1.46876 1.68170 1.10017 1.06674 1.21487 0.99940 0.94936 0.84414 1.21906 1.00265 0.95442 0.99796 1.21673 1.01877 0.98920 0.93630 1.21641 1.04160 0.91600 0.99756 1.20181 0.76557 0.89637 0.82421 1.90734 1.50819 1.65180 1.36147 1.77254 0.99950 1.08504 1.29374 1.48995 1.00971 1.07780 1.52183 1.19684 0.95981 0.71326 0.98899 1.21283 1.46943 0.98000 0.91338 0.91817 1.24930 0.94673 0.96028 0.98138 1.69907 1.44751 1.07046 1.31215 0.86410 0.78791 0.77675 0.83772 1.19989 1.20941 1.19938 0.91086 0.89888 0.90686 0.82532 0.75448 0.86121 0.87051 0.91386 0.90320 0.90332 0.89689 0.90477 0.91119 0.88006 0.88228 0.92996 0.92809 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -6.12 9.52 -39.83 -0.38 -6.50 16 4 C 0.26 5.49 8.11 -154.38 -1.25 4.24 16 5 N -0.63 -9.90 5.45 -11.13 -0.06 -9.96 16 6 C 0.50 7.38 7.85 -10.98 -0.09 7.30 16 7 O -0.51 -9.12 13.55 5.55 0.08 -9.04 16 8 C 0.09 0.93 5.70 -5.19 -0.03 0.90 16 9 N -0.59 -5.89 2.30 -176.23 -0.41 -6.30 16 10 C 0.11 0.80 6.32 -4.39 -0.03 0.77 16 11 C -0.14 -0.79 6.03 -26.50 -0.16 -0.95 16 12 C -0.12 -0.64 6.03 -26.51 -0.16 -0.80 16 13 C -0.13 -1.05 6.03 -28.10 -0.17 -1.22 16 14 C 0.52 6.20 7.44 -11.87 -0.09 6.11 16 15 O -0.55 -8.83 16.18 5.56 0.09 -8.75 16 16 N -0.32 -7.53 12.59 31.44 0.40 -7.13 16 17 N -0.32 -7.66 3.59 -58.33 -0.21 -7.87 16 18 C 0.26 6.72 5.81 -5.19 -0.03 6.69 16 19 C -0.54 -14.86 9.39 -34.44 -0.32 -15.18 16 20 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 23 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 31 H 0.41 5.07 8.82 -40.82 -0.36 4.71 16 32 H 0.12 1.22 7.13 -51.93 -0.37 0.85 16 33 H 0.11 0.69 8.01 -51.93 -0.42 0.27 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.32 8.13 -51.93 -0.42 -0.10 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.05 1.38 7.65 -51.93 -0.40 0.99 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -36.08 369.17 -8.30 -44.37 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.45 Total: 4.17 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.02 Total: 3.27 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.46 Total: -55.66 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.08 -8.30 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271106652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.384 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds