Wall clock time and date at job start Tue Mar 31 2020 13:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 N 1.46496 * 109.46895 * 180.02562 * 8 6 5 10 10 C 1.45753 * 117.94917 * 269.74019 * 9 8 6 11 11 C 1.53096 * 110.39206 * 160.74520 * 10 9 8 12 12 C 1.53351 * 108.52642 * 51.11305 * 11 10 9 13 13 C 1.53070 * 108.42687 * 292.30886 * 12 11 10 14 14 C 1.33356 * 117.94816 * 90.00205 * 9 8 6 15 15 O 1.21279 * 118.24494 * 2.24234 * 14 9 8 16 16 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 17 17 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 18 18 C 1.46500 * 125.97897 * 359.96594 * 17 2 1 19 19 C 1.50698 * 109.46965 * 89.99833 * 18 17 2 20 20 H 1.08000 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99358 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47086 * 60.00203 * 23 21 19 25 25 H 1.48506 * 109.46840 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47109 * 299.99717 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 30 30 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 31 31 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 32 32 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 33 33 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 34 34 H 1.09003 * 109.30125 * 281.24067 * 10 9 8 35 35 H 1.09000 * 109.30126 * 40.60860 * 10 9 8 36 36 H 1.09007 * 109.80828 * 291.32846 * 11 10 9 37 37 H 1.08997 * 109.67993 * 170.82658 * 11 10 9 38 38 H 1.09004 * 109.67211 * 172.58293 * 12 11 10 39 39 H 1.09001 * 109.70337 * 52.06412 * 12 11 10 40 40 H 1.09003 * 109.40378 * 288.77714 * 13 12 11 41 41 H 1.08990 * 109.33233 * 168.98234 * 13 12 11 42 42 H 1.08994 * 109.46840 * 210.00162 * 18 17 2 43 43 H 1.09004 * 109.46443 * 329.99889 * 18 17 2 44 44 H 0.96998 * 120.00265 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 7 5.4462 5.1033 0.0298 10 6 5.2594 5.7684 -1.2537 11 6 4.3972 7.0221 -1.0843 12 6 4.9882 7.8706 0.0482 13 6 4.8030 7.1147 1.3663 14 6 5.2703 5.6958 1.2115 15 8 5.5003 5.0546 2.2149 16 7 3.6337 -0.6577 -0.0036 17 7 2.3016 -1.0910 -0.0059 18 6 1.8500 -2.4847 -0.0128 19 6 1.6945 -2.9553 -1.4359 20 1 1.9108 -2.2836 -2.2535 21 6 1.2760 -4.2434 -1.6941 22 7 1.0121 -5.0611 -0.6985 23 14 1.0838 -4.8270 -3.4582 24 1 2.3899 -4.7272 -4.1577 25 1 0.6247 -6.2393 -3.4651 26 1 0.0833 -3.9785 -4.1541 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1210 -0.0006 31 1 5.6584 1.0776 0.0055 32 1 6.4538 3.4885 0.9100 33 1 6.4541 3.4989 -0.8699 34 1 6.2317 6.0476 -1.6597 35 1 4.7665 5.0850 -1.9452 36 1 3.3757 6.7367 -0.8326 37 1 4.3987 7.5965 -2.0107 38 1 4.4696 8.8280 0.0984 39 1 6.0500 8.0374 -0.1332 40 1 3.7485 7.1205 1.6420 41 1 5.3844 7.6040 2.1476 42 1 2.5849 -3.1072 0.4976 43 1 0.8916 -2.5584 0.5012 44 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271106652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:04 Heat of formation + Delta-G solvation = -18.039060 kcal Electronic energy + Delta-G solvation = -26683.890854 eV Core-core repulsion = 22829.911169 eV Total energy + Delta-G solvation = -3853.979685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38821 -41.70796 -40.22529 -37.49452 -36.36597 -35.32709 -35.03240 -33.10037 -32.67531 -30.64386 -29.53544 -28.25343 -27.90114 -25.43260 -24.96555 -23.61644 -22.54706 -21.32212 -20.83452 -19.55677 -18.82303 -18.20522 -18.00771 -17.59888 -17.48002 -16.93770 -16.55652 -16.44199 -16.10549 -15.66975 -15.25348 -15.11796 -14.85332 -14.52155 -14.36711 -14.29206 -14.14559 -13.85262 -13.73247 -13.59935 -13.24255 -13.09177 -12.86163 -12.68866 -12.68708 -12.26223 -12.21572 -12.12755 -11.83042 -11.79773 -11.59111 -11.37850 -11.09253 -10.75443 -10.74605 -9.82150 -9.62271 -9.17815 -8.34015 -6.52255 0.86691 1.18625 1.34630 1.39150 1.39569 1.48912 1.64317 1.94674 2.16392 2.30754 2.43752 2.95648 3.51950 3.60060 3.84881 3.89026 3.94185 3.96218 4.11804 4.18254 4.34204 4.43088 4.54180 4.58311 4.63732 4.71820 4.74616 4.84183 4.88332 4.94173 4.96232 4.97996 5.07882 5.09806 5.16463 5.20249 5.31401 5.41352 5.51727 5.78915 5.90169 6.22716 6.23343 6.38735 6.59659 6.93144 7.07080 7.10330 7.18791 8.72017 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.002492 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.891519 B =11233.998971 C =11343.385577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 C -0.300 4.300 4 C 0.272 3.728 5 N -0.623 5.623 6 C 0.502 3.498 7 O -0.542 6.542 8 C 0.098 3.902 9 N -0.584 5.584 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.131 4.131 14 C 0.512 3.488 15 O -0.604 6.604 16 N -0.357 5.357 17 N -0.343 5.343 18 C 0.276 3.724 19 C -0.554 4.554 20 H 0.050 0.950 21 C 0.022 3.978 22 N -0.918 5.918 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.265 1.265 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.163 0.837 31 H 0.426 0.574 32 H 0.122 0.878 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.024 0.976 43 H 0.051 0.949 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 26.408 -2.839 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.330 4.330 4 C 0.018 3.982 5 N -0.274 5.274 6 C 0.289 3.711 7 O -0.417 6.417 8 C -0.029 4.029 9 N -0.314 5.314 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.152 4.152 13 C -0.171 4.171 14 C 0.302 3.698 15 O -0.486 6.486 16 N -0.188 5.188 17 N -0.125 5.125 18 C 0.157 3.843 19 C -0.593 4.593 20 H 0.069 0.931 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.189 1.189 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.180 0.820 31 H 0.264 0.736 32 H 0.140 0.860 33 H 0.177 0.823 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.919 25.169 -2.291 26.801 hybrid contribution -0.288 -0.689 -0.418 0.856 sum 8.631 24.480 -2.709 26.098 Atomic orbital electron populations 1.20499 0.85355 1.04439 1.04035 1.21744 0.96679 0.86460 0.99416 1.21383 0.90092 0.99719 1.21844 1.19373 0.88922 0.89254 1.00672 1.42634 1.07012 1.05155 1.72563 1.22111 0.93139 0.81281 0.74613 1.90608 1.28436 1.74183 1.48485 1.21441 0.92433 0.80565 1.08495 1.47099 1.67019 1.09869 1.07449 1.21798 1.01923 0.95061 0.82678 1.21930 0.98755 0.95346 1.01269 1.21665 1.03016 0.99019 0.91452 1.21699 1.03729 0.89723 1.01933 1.20942 0.75701 0.90948 0.82186 1.90703 1.53256 1.66678 1.37934 1.77176 1.00048 1.09957 1.31587 1.48805 1.01772 1.07535 1.54403 1.19248 0.94831 0.72340 0.97909 1.21398 1.47757 0.98458 0.91641 0.93141 1.25761 0.93872 0.95835 1.02406 1.69996 1.44888 1.07476 1.33278 0.85390 0.78799 0.77679 0.78529 1.19956 1.19740 1.18945 0.89061 0.91260 0.87936 0.81992 0.73576 0.85982 0.82346 0.88102 0.90984 0.92555 0.87065 0.88560 0.89689 0.88448 0.87415 0.95826 0.93141 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.95 9.89 71.24 0.70 -2.24 16 2 C 0.09 3.82 6.92 41.38 0.29 4.11 16 3 C -0.30 -12.75 9.52 22.11 0.21 -12.54 16 4 C 0.27 11.43 8.11 133.33 1.08 12.51 16 5 N -0.62 -19.30 5.45 -307.50 -1.68 -20.98 16 6 C 0.50 14.31 7.85 87.66 0.69 15.00 16 7 O -0.54 -19.31 13.55 -3.05 -0.04 -19.35 16 8 C 0.10 1.78 5.70 85.64 0.49 2.27 16 9 N -0.58 -10.70 2.30 -830.64 -1.91 -12.62 16 10 C 0.11 1.18 6.32 86.55 0.55 1.72 16 11 C -0.14 -1.21 6.03 30.74 0.19 -1.02 16 12 C -0.11 -0.85 6.03 30.74 0.19 -0.66 16 13 C -0.13 -1.92 6.03 29.71 0.18 -1.74 16 14 C 0.51 11.75 7.44 87.72 0.65 12.40 16 15 O -0.60 -19.59 16.18 -3.03 -0.05 -19.63 16 16 N -0.36 -17.24 12.59 -54.44 -0.69 -17.93 16 17 N -0.34 -17.08 3.59 -338.45 -1.22 -18.29 16 18 C 0.28 14.88 5.81 85.63 0.50 15.38 16 19 C -0.55 -31.38 9.39 25.60 0.24 -31.14 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.02 1.23 5.46 84.66 0.46 1.69 16 22 N -0.92 -52.31 13.29 21.45 0.28 -52.03 16 23 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.59 7.71 -2.39 -0.02 2.58 16 29 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 30 H 0.16 6.71 5.92 -2.91 -0.02 6.70 16 31 H 0.43 10.19 8.82 -92.71 -0.82 9.37 16 32 H 0.12 2.31 7.13 -2.39 -0.02 2.29 16 33 H 0.16 1.39 8.01 -2.39 -0.02 1.37 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.06 0.77 8.12 -2.38 -0.02 0.75 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.08 0.44 8.13 -2.39 -0.02 0.42 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 2.70 7.65 -2.39 -0.02 2.69 16 44 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -81.14 369.17 3.35 -77.79 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.21 Total: 22.20 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.41 Total: 15.74 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.21 Total: -121.84 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.09 Total: -38.98 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -81.14 3.35 -77.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271106652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.751 kcal (2) G-P(sol) polarization free energy of solvation -81.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds