Wall clock time and date at job start Tue Mar 31 2020 13:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35214 * 126.06174 * 2 1 4 4 C 1.40464 * 107.87157 * 180.02562 * 3 2 1 5 5 N 1.39930 * 125.98353 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99947 * 359.97438 * 5 4 3 7 7 O 1.21387 * 119.99832 * 0.02562 * 6 5 4 8 8 C 1.49340 * 119.99868 * 180.02562 * 6 5 4 9 9 O 1.21356 * 120.00125 * 0.02562 * 8 6 5 10 10 N 1.34782 * 120.00036 * 179.97438 * 8 6 5 11 11 C 1.47431 * 125.64696 * 359.69331 * 10 8 6 12 12 C 1.55128 * 104.72305 * 155.81429 * 11 10 8 13 13 C 1.55157 * 101.48486 * 37.29468 * 12 11 10 14 14 C 1.47016 * 125.64962 * 179.97438 * 10 8 6 15 15 H 1.08998 * 109.88421 * 300.44336 * 14 10 8 16 16 C 1.53001 * 109.88066 * 61.60964 * 14 10 8 17 17 N 1.31284 * 108.03544 * 359.71889 * 4 3 2 18 18 N 1.34989 * 126.06648 * 180.02562 * 2 1 3 19 19 C 1.46506 * 125.96794 * 359.96739 * 18 2 1 20 20 C 1.50703 * 109.47289 * 89.99654 * 19 18 2 21 21 H 1.07994 * 119.99399 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99734 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00111 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47123 * 89.99915 * 24 22 20 26 26 H 1.48498 * 109.47161 * 209.99603 * 24 22 20 27 27 H 1.48497 * 109.47329 * 329.99749 * 24 22 20 28 28 H 1.09004 * 109.47033 * 269.95560 * 1 2 3 29 29 H 1.09000 * 109.47580 * 29.95356 * 1 2 3 30 30 H 1.09002 * 109.47163 * 149.95938 * 1 2 3 31 31 H 1.08001 * 126.06610 * 0.06347 * 3 2 1 32 32 H 0.96998 * 119.99794 * 180.02562 * 5 4 3 33 33 H 1.08995 * 110.36354 * 274.74442 * 11 10 8 34 34 H 1.09003 * 110.36204 * 37.06477 * 11 10 8 35 35 H 1.08996 * 111.19440 * 279.19438 * 12 11 10 36 36 H 1.08999 * 110.93732 * 155.28585 * 12 11 10 37 37 H 1.09005 * 110.72107 * 205.97107 * 13 12 11 38 38 H 1.09001 * 110.72221 * 82.69121 * 13 12 11 39 39 H 1.09001 * 109.47009 * 58.54322 * 16 14 10 40 40 H 1.09005 * 109.46910 * 178.54556 * 16 14 10 41 41 H 1.09000 * 109.46805 * 298.54648 * 16 14 10 42 42 H 1.09001 * 109.47060 * 210.00104 * 19 18 2 43 43 H 1.09004 * 109.47073 * 329.99593 * 19 18 2 44 44 H 0.97007 * 120.00011 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0931 0.0000 4 6 3.6374 0.6546 -0.0006 5 7 4.7719 1.4736 -0.0003 6 6 4.6351 2.8144 0.0001 7 8 3.5276 3.3114 0.0007 8 6 5.8459 3.6885 -0.0001 9 8 6.9531 3.1915 -0.0012 10 7 5.7091 5.0293 -0.0002 11 6 4.4301 5.7625 -0.0065 12 6 4.7655 7.1457 0.6106 13 6 6.1781 7.4105 0.0260 14 6 6.8106 6.0030 0.0001 15 1 7.4321 5.8595 0.8840 16 6 7.6540 5.8350 -1.2654 17 7 3.6338 -0.6583 0.0052 18 7 2.3017 -1.0912 -0.0005 19 6 1.8498 -2.4848 -0.0004 20 6 1.6941 -2.9625 -1.4212 21 1 1.9105 -2.2949 -2.2421 22 6 1.2764 -4.2521 -1.6730 23 7 1.1400 -4.6688 -2.9129 24 14 0.9027 -5.4069 -0.2531 25 1 -0.5283 -5.2815 0.1235 26 1 1.1854 -6.8053 -0.6649 27 1 1.7538 -5.0519 0.9108 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 1.9715 2.1209 0.0010 32 1 5.6568 1.0764 -0.0011 33 1 4.0643 5.8783 -1.0267 34 1 3.6923 5.2434 0.6054 35 1 4.7964 7.0946 1.6989 36 1 4.0563 7.9033 0.2770 37 1 6.7459 8.0764 0.6759 38 1 6.1079 7.8205 -0.9815 39 1 7.0232 5.9739 -2.1434 40 1 8.4528 6.5766 -1.2708 41 1 8.0866 4.8347 -1.2835 42 1 2.5845 -3.1050 0.5130 43 1 0.8914 -2.5560 0.5139 44 1 0.8457 -5.5760 -3.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271113348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:14 Heat of formation + Delta-G solvation = 21.182855 kcal Electronic energy + Delta-G solvation = -26666.148152 eV Core-core repulsion = 22813.869256 eV Total energy + Delta-G solvation = -3852.278895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25619 -40.52159 -38.98231 -37.76821 -35.13666 -33.35484 -32.15413 -31.67163 -31.57975 -31.19031 -27.52313 -26.51792 -26.22691 -25.49424 -23.03261 -22.24103 -21.60186 -20.22745 -19.94541 -18.99596 -17.47534 -17.32083 -17.14851 -16.55585 -16.12087 -15.68293 -15.35342 -14.72904 -14.66310 -14.25751 -14.13035 -13.97716 -13.70720 -13.49242 -13.30082 -13.01319 -12.61052 -12.59412 -12.48381 -12.36548 -12.17448 -12.00682 -11.73468 -11.62114 -11.33454 -11.23486 -11.14130 -11.04705 -10.83973 -10.61660 -10.05058 -10.00683 -9.63317 -9.47319 -9.05840 -8.81141 -8.10648 -7.61410 -6.28806 -4.32573 1.19794 1.95016 2.56288 2.97936 3.00555 3.13297 3.21672 3.22949 3.60538 3.64740 4.12939 4.17814 4.19349 4.35919 4.48592 4.85373 4.91611 4.98823 5.02026 5.19676 5.24047 5.34421 5.39445 5.52661 5.53783 5.61020 5.67393 5.77718 5.79024 5.87796 5.96627 6.01283 6.04683 6.28035 6.32568 6.43312 6.50136 6.64894 6.95761 7.21729 7.24341 7.27862 7.60483 7.77069 7.93169 8.27321 8.45486 8.76333 9.25928 10.83584 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.002534 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.381929 B =11045.690063 C =11523.936992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 C -0.285 4.285 4 C 0.262 3.738 5 N -0.599 5.599 6 C 0.516 3.484 7 O -0.494 6.494 8 C 0.530 3.470 9 O -0.517 6.517 10 N -0.587 5.587 11 C 0.093 3.907 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.132 3.868 15 H 0.081 0.919 16 C -0.166 4.166 17 N -0.308 5.308 18 N -0.313 5.313 19 C 0.231 3.769 20 C -0.543 4.543 21 H 0.081 0.919 22 C 0.080 3.920 23 N -0.885 5.885 24 Si 0.872 3.128 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.423 0.577 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 23.908 7.852 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.034 4.034 3 C -0.316 4.316 4 C 0.009 3.991 5 N -0.248 5.248 6 C 0.296 3.704 7 O -0.367 6.367 8 C 0.312 3.688 9 O -0.392 6.392 10 N -0.322 5.322 11 C -0.029 4.029 12 C -0.174 4.174 13 C -0.167 4.167 14 C 0.030 3.970 15 H 0.099 0.901 16 C -0.224 4.224 17 N -0.138 5.138 18 N -0.095 5.095 19 C 0.112 3.888 20 C -0.581 4.581 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.522 5.522 24 Si 0.698 3.302 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.260 0.740 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.545 22.575 7.735 24.745 hybrid contribution -0.125 -0.345 0.425 0.562 sum 6.420 22.230 8.160 24.535 Atomic orbital electron populations 1.20418 0.87628 1.04326 1.02562 1.21077 0.95022 0.86855 1.00472 1.21251 0.89446 0.99939 1.20931 1.18885 0.86851 0.89612 1.03704 1.41999 1.08762 1.04307 1.69698 1.19861 0.89567 0.82440 0.78558 1.90660 1.26095 1.73463 1.46526 1.19512 0.89005 0.81867 0.78404 1.90774 1.26400 1.73482 1.48577 1.48323 1.09454 1.03863 1.70579 1.22776 0.85835 0.91754 1.02507 1.22890 0.96803 0.96688 1.01066 1.22762 0.96447 0.95027 1.02466 1.21720 0.88301 0.87567 0.99451 0.90073 1.22170 0.99895 1.03579 0.96716 1.77341 0.99434 1.08392 1.28679 1.48599 1.01161 1.07191 1.52536 1.20042 0.95380 0.73570 0.99837 1.21164 1.47567 0.99073 0.90304 0.90057 1.24805 0.94442 0.97418 0.95816 1.69872 1.45458 1.18193 1.18670 0.86904 0.79430 0.81023 0.82815 1.19580 1.20459 1.18769 0.90964 0.90265 0.89732 0.82008 0.73973 0.90650 0.87730 0.90420 0.89482 0.89794 0.90130 0.92246 0.91351 0.90978 0.93070 0.93508 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.89 36.00 0.36 -1.08 16 2 C 0.10 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.28 -5.53 9.51 -39.82 -0.38 -5.91 16 4 C 0.26 5.26 8.10 -154.54 -1.25 4.01 16 5 N -0.60 -9.93 5.43 -11.58 -0.06 -10.00 16 6 C 0.52 7.74 7.82 -11.64 -0.09 7.65 16 7 O -0.49 -7.71 10.89 5.46 0.06 -7.65 16 8 C 0.53 7.08 7.70 -11.63 -0.09 6.99 16 9 O -0.52 -7.76 15.51 5.49 0.09 -7.68 16 10 N -0.59 -6.20 3.06 -163.42 -0.50 -6.70 16 11 C 0.09 0.81 6.08 -2.41 -0.01 0.79 16 12 C -0.14 -0.77 7.10 -24.46 -0.17 -0.94 16 13 C -0.13 -0.68 6.47 -24.89 -0.16 -0.84 16 14 C 0.13 1.08 3.46 -66.95 -0.23 0.85 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 16 C -0.17 -1.36 9.10 37.16 0.34 -1.02 16 17 N -0.31 -7.01 12.60 31.41 0.40 -6.61 16 18 N -0.31 -7.14 3.59 -58.32 -0.21 -7.35 16 19 C 0.23 5.47 4.88 -5.19 -0.03 5.45 16 20 C -0.54 -15.05 9.94 -34.44 -0.34 -15.40 16 21 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 24 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 31 H 0.16 2.92 5.91 -52.49 -0.31 2.61 16 32 H 0.42 6.42 8.29 -40.82 -0.34 6.08 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.05 6.14 -51.93 -0.32 0.73 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.77 6.88 -51.93 -0.36 0.41 16 42 H 0.05 1.23 7.20 -51.93 -0.37 0.85 16 43 H 0.05 1.01 7.08 -51.93 -0.37 0.64 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -32.77 362.42 -7.67 -40.44 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.27 Total: 6.16 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.73 Total: 4.01 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.40 Total: -56.03 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.14 Total: -15.33 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.77 -7.67 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271113348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.626 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds