Wall clock time and date at job start Tue Mar 31 2020 13:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35214 * 126.06174 * 2 1 4 4 C 1.40464 * 107.87157 * 180.02562 * 3 2 1 5 5 N 1.39930 * 125.98353 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99947 * 359.97438 * 5 4 3 7 7 O 1.21387 * 119.99832 * 0.02562 * 6 5 4 8 8 C 1.49340 * 119.99868 * 180.02562 * 6 5 4 9 9 O 1.21356 * 120.00125 * 0.02562 * 8 6 5 10 10 N 1.34782 * 120.00036 * 179.97438 * 8 6 5 11 11 C 1.47431 * 125.64696 * 359.69331 * 10 8 6 12 12 C 1.55128 * 104.72305 * 155.81429 * 11 10 8 13 13 C 1.55157 * 101.48486 * 37.29468 * 12 11 10 14 14 C 1.47016 * 125.64962 * 179.97438 * 10 8 6 15 15 H 1.08998 * 109.88421 * 300.44336 * 14 10 8 16 16 C 1.53001 * 109.88066 * 61.60964 * 14 10 8 17 17 N 1.31284 * 108.03544 * 359.71889 * 4 3 2 18 18 N 1.34989 * 126.06648 * 180.02562 * 2 1 3 19 19 C 1.46506 * 125.96794 * 359.96739 * 18 2 1 20 20 C 1.50703 * 109.47289 * 89.99654 * 19 18 2 21 21 H 1.07994 * 119.99399 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99734 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00111 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47123 * 89.99915 * 24 22 20 26 26 H 1.48498 * 109.47161 * 209.99603 * 24 22 20 27 27 H 1.48497 * 109.47329 * 329.99749 * 24 22 20 28 28 H 1.09004 * 109.47033 * 269.95560 * 1 2 3 29 29 H 1.09000 * 109.47580 * 29.95356 * 1 2 3 30 30 H 1.09002 * 109.47163 * 149.95938 * 1 2 3 31 31 H 1.08001 * 126.06610 * 0.06347 * 3 2 1 32 32 H 0.96998 * 119.99794 * 180.02562 * 5 4 3 33 33 H 1.08995 * 110.36354 * 274.74442 * 11 10 8 34 34 H 1.09003 * 110.36204 * 37.06477 * 11 10 8 35 35 H 1.08996 * 111.19440 * 279.19438 * 12 11 10 36 36 H 1.08999 * 110.93732 * 155.28585 * 12 11 10 37 37 H 1.09005 * 110.72107 * 205.97107 * 13 12 11 38 38 H 1.09001 * 110.72221 * 82.69121 * 13 12 11 39 39 H 1.09001 * 109.47009 * 58.54322 * 16 14 10 40 40 H 1.09005 * 109.46910 * 178.54556 * 16 14 10 41 41 H 1.09000 * 109.46805 * 298.54648 * 16 14 10 42 42 H 1.09001 * 109.47060 * 210.00104 * 19 18 2 43 43 H 1.09004 * 109.47073 * 329.99593 * 19 18 2 44 44 H 0.97007 * 120.00011 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0931 0.0000 4 6 3.6374 0.6546 -0.0006 5 7 4.7719 1.4736 -0.0003 6 6 4.6351 2.8144 0.0001 7 8 3.5276 3.3114 0.0007 8 6 5.8459 3.6885 -0.0001 9 8 6.9531 3.1915 -0.0012 10 7 5.7091 5.0293 -0.0002 11 6 4.4301 5.7625 -0.0065 12 6 4.7655 7.1457 0.6106 13 6 6.1781 7.4105 0.0260 14 6 6.8106 6.0030 0.0001 15 1 7.4321 5.8595 0.8840 16 6 7.6540 5.8350 -1.2654 17 7 3.6338 -0.6583 0.0052 18 7 2.3017 -1.0912 -0.0005 19 6 1.8498 -2.4848 -0.0004 20 6 1.6941 -2.9625 -1.4212 21 1 1.9105 -2.2949 -2.2421 22 6 1.2764 -4.2521 -1.6730 23 7 1.1400 -4.6688 -2.9129 24 14 0.9027 -5.4069 -0.2531 25 1 -0.5283 -5.2815 0.1235 26 1 1.1854 -6.8053 -0.6649 27 1 1.7538 -5.0519 0.9108 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 1.9715 2.1209 0.0010 32 1 5.6568 1.0764 -0.0011 33 1 4.0643 5.8783 -1.0267 34 1 3.6923 5.2434 0.6054 35 1 4.7964 7.0946 1.6989 36 1 4.0563 7.9033 0.2770 37 1 6.7459 8.0764 0.6759 38 1 6.1079 7.8205 -0.9815 39 1 7.0232 5.9739 -2.1434 40 1 8.4528 6.5766 -1.2708 41 1 8.0866 4.8347 -1.2835 42 1 2.5845 -3.1050 0.5130 43 1 0.8914 -2.5560 0.5139 44 1 0.8457 -5.5760 -3.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271113348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:13 Heat of formation + Delta-G solvation = -0.972822 kcal Electronic energy + Delta-G solvation = -26667.108894 eV Core-core repulsion = 22813.869256 eV Total energy + Delta-G solvation = -3853.239638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.59004 -41.78395 -40.08406 -38.72313 -36.57096 -35.28806 -33.28490 -32.96579 -32.82137 -32.25528 -29.29506 -27.94591 -27.04381 -26.58362 -24.55196 -23.47305 -22.42964 -21.42324 -21.33960 -20.21565 -19.24853 -18.57333 -18.33460 -17.76346 -17.41454 -17.00756 -16.74426 -16.26286 -15.96593 -15.58248 -15.09615 -14.98216 -14.86881 -14.59153 -14.47608 -14.16110 -13.92876 -13.79222 -13.68677 -13.66619 -13.31920 -13.26704 -12.98579 -12.64861 -12.59897 -12.55662 -12.31031 -11.98543 -11.85748 -11.72658 -11.62666 -11.60748 -11.53170 -10.90230 -10.64741 -9.93009 -9.68826 -9.23103 -8.41477 -6.53096 0.00503 0.76370 1.02726 1.34614 1.37376 1.47426 1.66891 1.72415 2.19517 2.26178 2.40188 2.90883 3.05523 3.60512 3.66849 3.76116 3.97663 4.02704 4.24814 4.31206 4.37774 4.44191 4.52734 4.61152 4.61538 4.71011 4.77257 4.79563 4.84499 4.94093 4.97677 5.04137 5.06379 5.13549 5.15510 5.19922 5.22005 5.33216 5.37332 5.72295 5.85406 5.95400 6.08564 6.32568 6.43611 6.50825 6.72184 6.87087 7.10951 8.75191 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.002534 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.381929 B =11045.690063 C =11523.936992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.291 4.291 4 C 0.268 3.732 5 N -0.602 5.602 6 C 0.517 3.483 7 O -0.498 6.498 8 C 0.529 3.471 9 O -0.540 6.540 10 N -0.580 5.580 11 C 0.084 3.916 12 C -0.126 4.126 13 C -0.118 4.118 14 C 0.122 3.878 15 H 0.080 0.920 16 C -0.162 4.162 17 N -0.352 5.352 18 N -0.339 5.339 19 C 0.240 3.760 20 C -0.552 4.552 21 H 0.024 0.976 22 C 0.022 3.978 23 N -0.937 5.937 24 Si 0.951 3.049 25 H -0.248 1.248 26 H -0.279 1.279 27 H -0.245 1.245 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.177 0.823 32 H 0.427 0.573 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 26.135 9.929 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 C -0.322 4.322 4 C 0.014 3.986 5 N -0.251 5.251 6 C 0.299 3.701 7 O -0.371 6.371 8 C 0.311 3.689 9 O -0.418 6.418 10 N -0.313 5.313 11 C -0.037 4.037 12 C -0.164 4.164 13 C -0.156 4.156 14 C 0.020 3.980 15 H 0.099 0.901 16 C -0.220 4.220 17 N -0.183 5.183 18 N -0.121 5.121 19 C 0.121 3.879 20 C -0.590 4.590 21 H 0.042 0.958 22 C -0.178 4.178 23 N -0.575 5.575 24 Si 0.772 3.228 25 H -0.171 1.171 26 H -0.205 1.205 27 H -0.169 1.169 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.194 0.806 32 H 0.265 0.735 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.786 24.887 9.818 27.372 hybrid contribution 0.156 -0.835 -0.323 0.909 sum 5.942 24.051 9.495 26.532 Atomic orbital electron populations 1.20582 0.84690 1.04686 1.04717 1.21840 0.96928 0.86087 0.98717 1.21484 0.89095 1.00477 1.21095 1.19204 0.88256 0.89312 1.01827 1.42122 1.08120 1.04691 1.70203 1.20291 0.90309 0.81953 0.77590 1.90639 1.26596 1.73464 1.46365 1.19160 0.87818 0.82776 0.79130 1.90767 1.26669 1.74081 1.50289 1.48523 1.11323 1.03137 1.68357 1.22953 0.84725 0.93276 1.02743 1.22888 0.97492 0.94898 1.01140 1.22781 0.95971 0.93084 1.03742 1.22042 0.87887 0.88662 0.99368 0.90150 1.22138 1.00519 1.02616 0.96708 1.77246 1.00113 1.09901 1.30994 1.48516 1.01659 1.07360 1.54568 1.19825 0.96562 0.74441 0.97109 1.21241 1.47844 0.98802 0.91123 0.95789 1.25838 0.93709 0.99196 0.99068 1.70036 1.46814 1.19056 1.21628 0.85679 0.80607 0.77640 0.78922 1.17143 1.20469 1.16868 0.87756 0.87878 0.91323 0.80588 0.73484 0.90397 0.89194 0.90052 0.87254 0.87488 0.89008 0.92324 0.88888 0.93893 0.93320 0.90541 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.65 9.89 71.23 0.70 -1.94 16 2 C 0.09 3.73 6.92 41.37 0.29 4.02 16 3 C -0.29 -11.23 9.51 22.12 0.21 -11.02 16 4 C 0.27 10.96 8.10 133.40 1.08 12.04 16 5 N -0.60 -20.46 5.43 -308.89 -1.68 -22.14 16 6 C 0.52 15.65 7.82 87.24 0.68 16.33 16 7 O -0.50 -15.33 10.89 -3.36 -0.04 -15.37 16 8 C 0.53 14.22 7.70 87.23 0.67 14.89 16 9 O -0.54 -16.59 15.51 -3.27 -0.05 -16.64 16 10 N -0.58 -11.69 3.06 -789.30 -2.42 -14.11 16 11 C 0.08 1.33 6.08 86.93 0.53 1.85 16 12 C -0.13 -1.02 7.10 32.06 0.23 -0.79 16 13 C -0.12 -0.83 6.47 31.78 0.21 -0.63 16 14 C 0.12 1.77 3.46 45.34 0.16 1.93 16 15 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 16 C -0.16 -2.45 9.10 71.98 0.66 -1.80 16 17 N -0.35 -16.51 12.60 -54.53 -0.69 -17.19 16 18 N -0.34 -15.67 3.59 -338.43 -1.22 -16.89 16 19 C 0.24 11.41 4.88 85.63 0.42 11.83 16 20 C -0.55 -31.68 9.94 25.60 0.25 -31.43 16 21 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 22 C 0.02 1.22 5.47 84.65 0.46 1.68 16 23 N -0.94 -57.12 13.96 21.45 0.30 -56.82 16 24 Si 0.95 40.69 27.47 68.60 1.88 42.57 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.25 -9.73 6.54 99.48 0.65 -9.08 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.07 2.29 7.71 -2.39 -0.02 2.27 16 31 H 0.18 6.18 5.91 -2.91 -0.02 6.16 16 32 H 0.43 13.56 8.29 -92.71 -0.77 12.79 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.70 6.14 -2.39 -0.01 1.69 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.09 0.50 7.85 -2.39 -0.02 0.48 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.04 0.91 6.88 -2.39 -0.02 0.90 16 42 H 0.05 2.32 7.20 -2.39 -0.02 2.30 16 43 H 0.08 3.16 7.08 -2.38 -0.02 3.14 16 44 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -75.30 362.42 2.85 -72.45 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.21 Total: 27.18 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.55 Total: 16.96 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.70 Total: -127.15 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.09 Total: -32.01 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.88 Total: 42.57 kcal Total: -75.30 2.85 -72.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271113348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.473 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds