Wall clock time and date at job start Tue Mar 31 2020 13:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 119.99784 * 2 1 4 4 N 1.34776 * 120.00183 * 179.97438 * 2 1 3 5 5 C 1.47422 * 125.64615 * 359.95734 * 4 2 1 6 6 C 1.54910 * 104.83533 * 204.16414 * 5 4 2 7 7 C 1.55403 * 101.66230 * 323.07838 * 6 5 4 8 8 C 1.47012 * 125.64866 * 180.02562 * 4 2 1 9 9 H 1.09004 * 109.88678 * 59.33483 * 8 4 2 10 10 C 1.50700 * 109.88304 * 298.32222 * 8 4 2 11 11 O 1.21292 * 119.99931 * 341.71914 * 10 8 4 12 12 N 1.34784 * 119.99961 * 161.71691 * 10 8 4 13 13 C 1.40153 * 119.99846 * 179.97438 * 12 10 8 14 14 C 1.40409 * 125.97278 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86616 * 179.97438 * 14 13 12 16 16 C 1.50702 * 126.06610 * 179.97438 * 15 14 13 17 17 N 1.34967 * 107.86330 * 359.97438 * 15 14 13 18 18 C 1.46496 * 125.97890 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46860 * 90.00030 * 18 17 15 20 20 H 1.07997 * 120.00291 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99855 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00399 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46962 * 89.99616 * 23 21 19 25 25 H 1.48497 * 109.47542 * 209.99576 * 23 21 19 26 26 H 1.48498 * 109.47162 * 330.00009 * 23 21 19 27 27 N 1.31219 * 125.97315 * 179.68830 * 13 12 10 28 28 H 1.09001 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47523 * 299.99703 * 1 2 3 30 30 H 1.09001 * 109.47043 * 60.00323 * 1 2 3 31 31 H 1.08997 * 110.37235 * 323.00542 * 5 4 2 32 32 H 1.09006 * 110.36542 * 85.21780 * 5 4 2 33 33 H 1.08992 * 111.00427 * 81.06363 * 6 5 4 34 34 H 1.08999 * 111.00754 * 204.88381 * 6 5 4 35 35 H 1.09000 * 110.69679 * 277.04653 * 7 6 5 36 36 H 1.09000 * 110.85457 * 153.69817 * 7 6 5 37 37 H 0.96995 * 120.00015 * 359.72695 * 12 10 8 38 38 H 1.07995 * 126.06999 * 0.02562 * 14 13 12 39 39 H 1.09004 * 109.47323 * 90.02467 * 16 15 14 40 40 H 1.09002 * 109.47153 * 210.02200 * 16 15 14 41 41 H 1.08997 * 109.47212 * 330.01940 * 16 15 14 42 42 H 1.08998 * 109.47451 * 210.00593 * 18 17 15 43 43 H 1.09009 * 109.46945 * 330.00716 * 18 17 15 44 44 H 0.97000 * 119.99675 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5102 0.0020 6 6 2.6546 -3.4344 0.6151 7 6 3.9583 -2.8224 0.0314 8 6 3.6439 -1.3118 0.0011 9 1 4.0640 -0.8279 0.8829 10 6 4.2206 -0.6935 -1.2463 11 8 3.5067 -0.4809 -2.2036 12 7 5.5296 -0.3765 -1.2982 13 6 6.0660 0.1981 -2.4585 14 6 5.3583 0.4971 -3.6338 15 6 6.2287 1.0391 -4.5157 16 6 5.9020 1.5094 -5.9097 17 7 7.4418 1.0840 -3.9257 18 6 8.6734 1.5996 -4.5285 19 6 8.8016 3.0710 -4.2290 20 1 8.0418 3.5718 -3.6473 21 6 9.8893 3.7775 -4.6965 22 7 10.0014 5.0615 -4.4346 23 14 11.2038 2.9111 -5.7019 24 1 10.8519 2.9822 -7.1429 25 1 12.5142 3.5734 -5.4792 26 1 11.2904 1.4891 -5.2831 27 7 7.3161 0.5563 -2.6343 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.6735 -2.5189 0.6175 32 1 1.3383 -2.8215 -1.0159 33 1 2.6497 -3.3731 1.7032 34 1 2.5224 -4.4642 0.2832 35 1 4.1435 -3.1984 -0.9748 36 1 4.8082 -3.0262 0.6828 37 1 6.0996 -0.5428 -0.5312 38 1 4.3056 0.3256 -3.8032 39 1 5.6111 2.5595 -5.8801 40 1 6.7785 1.3931 -6.5471 41 1 5.0803 0.9158 -6.3101 42 1 9.5305 1.0685 -4.1147 43 1 8.6399 1.4501 -5.6078 44 1 10.7665 5.5586 -4.7639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271179872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:56 Heat of formation + Delta-G solvation = 19.580787 kcal Electronic energy + Delta-G solvation = -26996.455776 eV Core-core repulsion = 23144.107409 eV Total energy + Delta-G solvation = -3852.348366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06745 -40.38180 -38.75709 -37.35263 -34.83538 -33.31298 -32.39095 -31.56647 -31.12782 -30.36811 -29.05284 -27.07769 -26.37812 -24.50036 -22.83878 -22.06134 -21.44698 -19.84641 -19.80052 -18.79132 -17.45074 -17.29878 -17.09206 -16.20071 -15.96492 -15.40764 -15.22681 -15.02800 -14.71415 -14.42978 -13.89320 -13.84442 -13.56616 -13.41637 -13.20407 -12.93635 -12.66600 -12.56663 -12.41971 -12.28532 -12.27748 -12.05586 -11.83878 -11.64538 -11.51528 -11.36704 -11.17686 -10.77433 -10.53906 -10.02592 -9.99300 -9.92009 -9.69401 -9.54701 -8.88409 -8.76094 -7.96146 -7.44973 -6.23583 -4.26662 2.23931 2.39495 2.63162 2.87993 2.93423 3.16119 3.24269 3.24862 3.67846 3.77591 4.00767 4.10437 4.23418 4.42786 4.57084 4.67658 4.75790 4.94557 4.99305 5.04382 5.13513 5.18678 5.30477 5.36046 5.39118 5.43416 5.56992 5.64444 5.68523 5.84968 5.88664 6.05855 6.23905 6.37380 6.47777 6.58023 6.63369 6.76211 7.23122 7.31333 7.42642 7.61032 7.88696 8.00772 8.27221 8.34283 8.60581 8.82748 9.31342 10.89047 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.002794 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.885587 B =10017.525707 C =10335.657936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.530 3.470 3 O -0.530 6.530 4 N -0.604 5.604 5 C 0.099 3.901 6 C -0.130 4.130 7 C -0.122 4.122 8 C 0.124 3.876 9 H 0.101 0.899 10 C 0.516 3.484 11 O -0.503 6.503 12 N -0.629 5.629 13 C 0.270 3.730 14 C -0.285 4.285 15 C 0.094 3.906 16 C -0.084 4.084 17 N -0.317 5.317 18 C 0.232 3.768 19 C -0.541 4.541 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.887 5.887 23 Si 0.873 3.127 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.263 1.263 27 N -0.318 5.318 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.159 0.841 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 -20.100 9.068 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.319 3.681 3 O -0.405 6.405 4 N -0.340 5.340 5 C -0.024 4.024 6 C -0.168 4.168 7 C -0.161 4.161 8 C 0.016 3.984 9 H 0.119 0.881 10 C 0.299 3.701 11 O -0.375 6.375 12 N -0.277 5.277 13 C 0.017 3.983 14 C -0.316 4.316 15 C -0.037 4.037 16 C -0.143 4.143 17 N -0.099 5.099 18 C 0.113 3.887 19 C -0.579 4.579 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.524 5.524 23 Si 0.699 3.301 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.188 1.188 27 N -0.148 5.148 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.245 0.755 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.411 -19.007 8.829 26.619 hybrid contribution 0.435 -0.240 -0.404 0.640 sum -15.976 -19.247 8.425 26.394 Atomic orbital electron populations 1.21861 0.91025 1.04241 1.05400 1.20540 0.90423 0.81910 0.75184 1.90797 1.70428 1.30526 1.48772 1.48313 1.04821 1.06458 1.74378 1.22408 0.96881 0.81506 1.01569 1.22829 0.93520 0.99336 1.01121 1.22700 0.99198 0.90738 1.03430 1.21412 0.83076 0.97651 0.96298 0.88120 1.20766 0.81009 0.78414 0.89870 1.90629 1.58676 1.51364 1.36876 1.42424 1.09694 1.60864 1.14680 1.18967 0.92015 0.99227 0.88063 1.21228 1.01461 1.15880 0.93055 1.21051 0.86046 0.99646 0.96952 1.20349 1.02007 1.02030 0.89888 1.48497 1.08527 1.44841 1.08054 1.19984 0.79751 0.96154 0.92793 1.21193 1.09689 0.90771 1.36223 0.90109 1.24815 0.97395 0.94746 0.95604 1.69883 1.30269 1.07275 1.44932 0.86899 0.81844 0.80411 0.80963 1.19623 1.20497 1.18802 1.77253 1.15872 1.22518 0.99171 0.90503 0.88762 0.88452 0.89864 0.90771 0.90025 0.89153 0.89629 0.88633 0.75538 0.82365 0.90066 0.91110 0.90714 0.93235 0.93689 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.19 36.01 0.37 -0.93 16 2 C 0.53 6.80 7.35 -10.99 -0.08 6.72 16 3 O -0.53 -9.69 16.91 5.56 0.09 -9.60 16 4 N -0.60 -6.29 2.75 -164.33 -0.45 -6.74 16 5 C 0.10 0.58 6.39 -2.53 -0.02 0.57 16 6 C -0.13 -0.55 7.09 -24.45 -0.17 -0.72 16 7 C -0.12 -0.79 6.49 -24.76 -0.16 -0.95 16 8 C 0.12 1.31 3.25 -68.11 -0.22 1.09 16 9 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.52 8.03 6.24 -10.98 -0.07 7.96 16 11 O -0.50 -9.56 13.25 5.55 0.07 -9.49 16 12 N -0.63 -10.35 5.45 -11.13 -0.06 -10.41 16 13 C 0.27 5.75 8.11 -154.39 -1.25 4.50 16 14 C -0.29 -6.17 9.52 -39.83 -0.38 -6.55 16 15 C 0.09 2.04 6.92 -82.28 -0.57 1.47 16 16 C -0.08 -1.48 10.11 36.01 0.36 -1.11 16 17 N -0.32 -7.63 3.59 -58.33 -0.21 -7.84 16 18 C 0.23 5.74 5.06 -5.19 -0.03 5.71 16 19 C -0.54 -15.56 9.94 -34.44 -0.34 -15.91 16 20 H 0.08 2.65 8.06 -52.49 -0.42 2.22 16 21 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 22 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 23 Si 0.87 20.44 27.47 -169.99 -4.67 15.78 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 27 N -0.32 -7.51 12.59 31.44 0.40 -7.11 16 28 H 0.08 0.37 6.09 -51.93 -0.32 0.06 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.29 6.94 -51.93 -0.36 -0.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.64 7.84 -51.93 -0.41 0.23 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.41 5.37 8.82 -40.82 -0.36 5.01 16 38 H 0.16 3.39 5.92 -52.49 -0.31 3.07 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.18 7.07 -51.93 -0.37 0.81 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.22 7.20 -51.93 -0.37 0.85 16 43 H 0.05 1.02 6.47 -51.92 -0.34 0.68 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -39.41 364.85 -7.44 -46.85 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.23 Total: 5.19 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.66 Total: 3.98 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.45 Total: -58.21 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.09 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.41 -7.44 -46.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271179872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.429 kcal (2) G-P(sol) polarization free energy of solvation -39.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds