Wall clock time and date at job start Tue Mar 31 2020 13:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 119.99784 * 2 1 4 4 N 1.34776 * 120.00183 * 179.97438 * 2 1 3 5 5 C 1.47422 * 125.64615 * 359.95734 * 4 2 1 6 6 C 1.54910 * 104.83533 * 204.16414 * 5 4 2 7 7 C 1.55403 * 101.66230 * 323.07838 * 6 5 4 8 8 C 1.47012 * 125.64866 * 180.02562 * 4 2 1 9 9 H 1.09004 * 109.88678 * 59.33483 * 8 4 2 10 10 C 1.50700 * 109.88304 * 298.32222 * 8 4 2 11 11 O 1.21292 * 119.99931 * 341.71914 * 10 8 4 12 12 N 1.34784 * 119.99961 * 161.71691 * 10 8 4 13 13 C 1.40153 * 119.99846 * 179.97438 * 12 10 8 14 14 C 1.40409 * 125.97278 * 0.02562 * 13 12 10 15 15 C 1.35241 * 107.86616 * 179.97438 * 14 13 12 16 16 C 1.50702 * 126.06610 * 179.97438 * 15 14 13 17 17 N 1.34967 * 107.86330 * 359.97438 * 15 14 13 18 18 C 1.46496 * 125.97890 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46860 * 90.00030 * 18 17 15 20 20 H 1.07997 * 120.00291 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99855 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00399 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46962 * 89.99616 * 23 21 19 25 25 H 1.48497 * 109.47542 * 209.99576 * 23 21 19 26 26 H 1.48498 * 109.47162 * 330.00009 * 23 21 19 27 27 N 1.31219 * 125.97315 * 179.68830 * 13 12 10 28 28 H 1.09001 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47523 * 299.99703 * 1 2 3 30 30 H 1.09001 * 109.47043 * 60.00323 * 1 2 3 31 31 H 1.08997 * 110.37235 * 323.00542 * 5 4 2 32 32 H 1.09006 * 110.36542 * 85.21780 * 5 4 2 33 33 H 1.08992 * 111.00427 * 81.06363 * 6 5 4 34 34 H 1.08999 * 111.00754 * 204.88381 * 6 5 4 35 35 H 1.09000 * 110.69679 * 277.04653 * 7 6 5 36 36 H 1.09000 * 110.85457 * 153.69817 * 7 6 5 37 37 H 0.96995 * 120.00015 * 359.72695 * 12 10 8 38 38 H 1.07995 * 126.06999 * 0.02562 * 14 13 12 39 39 H 1.09004 * 109.47323 * 90.02467 * 16 15 14 40 40 H 1.09002 * 109.47153 * 210.02200 * 16 15 14 41 41 H 1.08997 * 109.47212 * 330.01940 * 16 15 14 42 42 H 1.08998 * 109.47451 * 210.00593 * 18 17 15 43 43 H 1.09009 * 109.46945 * 330.00716 * 18 17 15 44 44 H 0.97000 * 119.99675 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5102 0.0020 6 6 2.6546 -3.4344 0.6151 7 6 3.9583 -2.8224 0.0314 8 6 3.6439 -1.3118 0.0011 9 1 4.0640 -0.8279 0.8829 10 6 4.2206 -0.6935 -1.2463 11 8 3.5067 -0.4809 -2.2036 12 7 5.5296 -0.3765 -1.2982 13 6 6.0660 0.1981 -2.4585 14 6 5.3583 0.4971 -3.6338 15 6 6.2287 1.0391 -4.5157 16 6 5.9020 1.5094 -5.9097 17 7 7.4418 1.0840 -3.9257 18 6 8.6734 1.5996 -4.5285 19 6 8.8016 3.0710 -4.2290 20 1 8.0418 3.5718 -3.6473 21 6 9.8893 3.7775 -4.6965 22 7 10.0014 5.0615 -4.4346 23 14 11.2038 2.9111 -5.7019 24 1 10.8519 2.9822 -7.1429 25 1 12.5142 3.5734 -5.4792 26 1 11.2904 1.4891 -5.2831 27 7 7.3161 0.5563 -2.6343 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.6735 -2.5189 0.6175 32 1 1.3383 -2.8215 -1.0159 33 1 2.6497 -3.3731 1.7032 34 1 2.5224 -4.4642 0.2832 35 1 4.1435 -3.1984 -0.9748 36 1 4.8082 -3.0262 0.6828 37 1 6.0996 -0.5428 -0.5312 38 1 4.3056 0.3256 -3.8032 39 1 5.6111 2.5595 -5.8801 40 1 6.7785 1.3931 -6.5471 41 1 5.0803 0.9158 -6.3101 42 1 9.5305 1.0685 -4.1147 43 1 8.6399 1.4501 -5.6078 44 1 10.7665 5.5586 -4.7639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271179872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:55 Heat of formation + Delta-G solvation = -9.997966 kcal Electronic energy + Delta-G solvation = -26997.738407 eV Core-core repulsion = 23144.107409 eV Total energy + Delta-G solvation = -3853.630997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46911 -41.62295 -39.99169 -38.23436 -36.39400 -35.28879 -33.50100 -32.96129 -32.86898 -31.14072 -29.84634 -28.88313 -27.96231 -25.48572 -24.44705 -23.23569 -22.25917 -21.35502 -21.18029 -19.95733 -19.26974 -18.49641 -18.24266 -17.68088 -17.14275 -16.82489 -16.58445 -16.27676 -16.13127 -15.57915 -15.42337 -15.01246 -14.81519 -14.51579 -14.33534 -13.98279 -13.96747 -13.83994 -13.70024 -13.53597 -13.27317 -13.26442 -13.05242 -12.91024 -12.73226 -12.54976 -12.28997 -12.04814 -11.86416 -11.80503 -11.62833 -11.48180 -11.03708 -10.99618 -10.91576 -9.79717 -9.67127 -9.18167 -8.42921 -6.55128 0.80510 1.10750 1.33010 1.34112 1.38502 1.46991 1.61306 1.91734 2.12153 2.25077 2.32134 2.89133 3.32409 3.43360 3.66661 3.81397 3.85975 4.03563 4.04580 4.17482 4.33220 4.43085 4.46864 4.53244 4.60315 4.69357 4.72325 4.73180 4.77483 4.83308 4.89363 4.91342 4.98886 5.04079 5.08829 5.15069 5.19862 5.23845 5.32985 5.80471 5.94289 6.15166 6.32375 6.43703 6.48554 6.87209 7.01888 7.08927 7.10943 8.74239 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.002794 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.885587 B =10017.525707 C =10335.657936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.515 3.485 3 O -0.601 6.601 4 N -0.604 5.604 5 C 0.089 3.911 6 C -0.117 4.117 7 C -0.117 4.117 8 C 0.122 3.878 9 H 0.109 0.891 10 C 0.510 3.490 11 O -0.541 6.541 12 N -0.623 5.623 13 C 0.274 3.726 14 C -0.301 4.301 15 C 0.091 3.909 16 C -0.084 4.084 17 N -0.341 5.341 18 C 0.242 3.758 19 C -0.554 4.554 20 H 0.018 0.982 21 C 0.020 3.980 22 N -0.939 5.939 23 Si 0.955 3.045 24 H -0.249 1.249 25 H -0.277 1.277 26 H -0.243 1.243 27 N -0.353 5.353 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.424 0.576 38 H 0.159 0.841 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 -23.741 8.935 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.307 3.693 3 O -0.482 6.482 4 N -0.338 5.338 5 C -0.032 4.032 6 C -0.154 4.154 7 C -0.155 4.155 8 C 0.013 3.987 9 H 0.126 0.874 10 C 0.297 3.703 11 O -0.415 6.415 12 N -0.274 5.274 13 C 0.020 3.980 14 C -0.332 4.332 15 C -0.039 4.039 16 C -0.142 4.142 17 N -0.124 5.124 18 C 0.122 3.878 19 C -0.592 4.592 20 H 0.037 0.963 21 C -0.180 4.180 22 N -0.577 5.577 23 Si 0.775 3.225 24 H -0.172 1.172 25 H -0.202 1.202 26 H -0.166 1.166 27 N -0.184 5.184 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.262 0.738 38 H 0.177 0.823 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.021 -22.729 8.731 29.708 hybrid contribution 0.459 0.915 -0.263 1.057 sum -16.563 -21.814 8.468 28.668 Atomic orbital electron populations 1.21896 0.87301 1.06720 1.05771 1.21517 0.92402 0.81543 0.73882 1.90756 1.72107 1.33134 1.52197 1.48568 1.04904 1.07732 1.72562 1.22791 0.98614 0.79270 1.02537 1.22878 0.90784 0.99840 1.01923 1.22794 1.01673 0.87250 1.03799 1.21675 0.83438 1.00198 0.93344 0.87371 1.21904 0.80109 0.77202 0.91105 1.90591 1.59317 1.52835 1.38764 1.42639 1.10508 1.60399 1.13809 1.19360 0.91394 0.97843 0.89407 1.21387 1.01515 1.16697 0.93600 1.21752 0.85220 0.98424 0.98542 1.20513 1.03781 1.02068 0.87793 1.48459 1.09025 1.46248 1.08621 1.19800 0.80489 0.93103 0.94383 1.21257 1.08772 0.93168 1.36043 0.96328 1.25903 1.00027 0.95360 0.96683 1.70052 1.31596 1.09537 1.46527 0.85619 0.77447 0.79752 0.79641 1.17249 1.20224 1.16598 1.77163 1.17242 1.24262 0.99694 0.86942 0.87366 0.88981 0.86669 0.90903 0.88321 0.86694 0.90689 0.86075 0.73815 0.82328 0.90638 0.89893 0.87381 0.93008 0.90728 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.19 71.24 0.73 -1.50 16 2 C 0.51 13.17 7.35 87.66 0.64 13.82 16 3 O -0.60 -23.10 16.91 -3.04 -0.05 -23.15 16 4 N -0.60 -11.79 2.75 -792.20 -2.18 -13.97 16 5 C 0.09 0.75 6.39 86.86 0.56 1.31 16 6 C -0.12 -0.50 7.09 32.07 0.23 -0.27 16 7 C -0.12 -1.21 6.49 31.87 0.21 -1.00 16 8 C 0.12 2.48 3.25 44.60 0.14 2.62 16 9 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 10 C 0.51 16.18 6.24 87.66 0.55 16.73 16 11 O -0.54 -21.16 13.25 -3.07 -0.04 -21.20 16 12 N -0.62 -21.06 5.45 -307.50 -1.68 -22.73 16 13 C 0.27 12.04 8.11 133.33 1.08 13.12 16 14 C -0.30 -13.40 9.52 22.11 0.21 -13.19 16 15 C 0.09 4.00 6.92 41.39 0.29 4.29 16 16 C -0.08 -2.87 10.11 71.24 0.72 -2.15 16 17 N -0.34 -16.77 3.59 -338.44 -1.22 -17.98 16 18 C 0.24 11.96 5.06 85.63 0.43 12.39 16 19 C -0.55 -33.09 9.94 25.60 0.25 -32.84 16 20 H 0.02 1.29 8.06 -2.91 -0.02 1.27 16 21 C 0.02 1.15 5.47 84.65 0.46 1.61 16 22 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 23 Si 0.96 41.58 27.47 68.60 1.88 43.47 16 24 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 27 N -0.35 -17.22 12.59 -54.45 -0.69 -17.91 16 28 H 0.11 0.71 6.09 -2.39 -0.01 0.70 16 29 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.12 0.28 6.94 -2.39 -0.02 0.26 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.07 0.97 7.84 -2.39 -0.02 0.96 16 36 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.42 11.31 8.82 -92.71 -0.82 10.50 16 38 H 0.16 7.01 5.92 -2.91 -0.02 7.00 16 39 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 40 H 0.08 2.63 7.07 -2.39 -0.02 2.61 16 41 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.05 2.52 7.20 -2.39 -0.02 2.50 16 43 H 0.08 3.23 6.47 -2.38 -0.02 3.21 16 44 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -93.81 364.85 2.99 -90.81 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.16 Total: 26.18 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 6.50 Total: 14.94 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -5.46 Total: -131.04 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.09 Total: -44.35 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.47 kcal Total: -93.81 2.99 -90.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271179872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.814 kcal (2) G-P(sol) polarization free energy of solvation -93.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds