Wall clock time and date at job start Tue Mar 31 2020 13:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50699 * 119.99638 * 2 1 4 4 C 1.30998 * 120.00373 * 180.02562 * 2 1 3 5 5 C 1.50703 * 119.99660 * 353.78795 * 4 2 1 6 6 N 1.46504 * 109.46682 * 236.01432 * 5 4 2 7 7 C 1.34772 * 119.99869 * 179.97438 * 6 5 4 8 8 O 1.21361 * 120.00113 * 359.72715 * 7 6 5 9 9 C 1.49352 * 119.99870 * 180.02562 * 7 6 5 10 10 O 1.21381 * 119.99614 * 359.72095 * 9 7 6 11 11 N 1.34767 * 119.99844 * 179.72757 * 9 7 6 12 12 C 1.39935 * 120.00045 * 180.02562 * 11 9 7 13 13 C 1.40458 * 125.97844 * 359.70999 * 12 11 9 14 14 C 1.35213 * 107.86877 * 179.89165 * 13 12 11 15 15 C 1.50700 * 126.06424 * 180.16191 * 14 13 12 16 16 N 1.34986 * 107.87231 * 0.37083 * 14 13 12 17 17 C 1.46503 * 125.96983 * 179.72977 * 16 14 13 18 18 C 1.50696 * 109.47371 * 270.01915 * 17 16 14 19 19 H 1.08004 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00369 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00332 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46885 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47501 * 119.99790 * 22 20 18 25 25 H 1.48499 * 109.47168 * 240.00005 * 22 20 18 26 26 N 1.31266 * 125.98154 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47028 * 265.03412 * 1 2 3 28 28 H 1.08992 * 109.47494 * 25.04109 * 1 2 3 29 29 H 1.09007 * 109.46890 * 145.04094 * 1 2 3 30 30 H 1.09002 * 109.47585 * 270.00424 * 3 2 1 31 31 H 1.09001 * 109.47172 * 30.00074 * 3 2 1 32 32 H 1.08995 * 109.47321 * 150.00089 * 3 2 1 33 33 H 1.08001 * 120.00084 * 173.77855 * 4 2 1 34 34 H 1.09004 * 109.47259 * 116.02110 * 5 4 2 35 35 H 1.08990 * 109.47507 * 356.01227 * 5 4 2 36 36 H 0.97003 * 119.99953 * 359.97438 * 6 5 4 37 37 H 0.97009 * 120.00253 * 359.97438 * 11 9 7 38 38 H 1.08002 * 126.06733 * 0.03862 * 13 12 11 39 39 H 1.08999 * 109.46734 * 270.24859 * 15 14 13 40 40 H 1.08992 * 109.47364 * 30.24526 * 15 14 13 41 41 H 1.08997 * 109.47150 * 150.25437 * 15 14 13 42 42 H 1.09006 * 109.47242 * 30.01974 * 17 16 14 43 43 H 1.09004 * 109.47204 * 150.01829 * 17 16 14 44 44 H 0.97000 * 120.00671 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1621 -1.1344 -0.0005 5 6 1.4152 -2.4358 0.1401 6 7 1.9473 -3.1831 1.2824 7 6 1.4283 -4.3852 1.6020 8 8 0.5169 -4.8463 0.9465 9 6 1.9703 -5.1467 2.7668 10 8 2.8816 -4.6853 3.4225 11 7 1.4477 -6.3462 3.0896 12 6 1.9552 -7.0596 4.1813 13 6 3.0052 -6.6492 5.0191 14 6 3.1920 -7.6105 5.9514 15 6 4.2149 -7.5865 7.0579 16 7 2.3029 -8.5977 5.7125 17 6 2.1638 -9.8357 6.4835 18 6 3.0547 -10.8981 5.8931 19 1 3.6633 -10.6737 5.0295 20 6 3.0920 -12.1567 6.4545 21 7 2.3505 -12.4301 7.5057 22 14 4.1957 -13.4738 5.7221 23 1 4.9216 -12.9170 4.5523 24 1 5.1745 -13.9241 6.7441 25 1 3.3681 -14.6276 5.2872 26 7 1.5371 -8.2320 4.5981 27 1 -0.3633 -0.0890 1.0238 28 1 -0.3634 0.9310 -0.4349 29 1 -0.3633 -0.8423 -0.5889 30 1 2.4421 1.6199 -1.0277 31 1 1.6713 2.0648 0.5138 32 1 3.2128 1.1749 0.5138 33 1 3.2373 -1.1371 -0.1019 34 1 1.5379 -3.0252 -0.7685 35 1 0.3567 -2.2317 0.3008 36 1 2.6731 -2.8127 1.8087 37 1 0.7192 -6.7149 2.5657 38 1 3.5627 -5.7280 4.9352 39 1 5.1405 -8.0427 6.7068 40 1 4.4073 -6.5550 7.3525 41 1 3.8369 -8.1446 7.9144 42 1 2.4527 -9.6534 7.5187 43 1 1.1271 -10.1706 6.4492 44 1 2.3770 -13.3155 7.9010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276773494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:37 Heat of formation + Delta-G solvation = 19.860768 kcal Electronic energy + Delta-G solvation = -25542.574146 eV Core-core repulsion = 21690.237920 eV Total energy + Delta-G solvation = -3852.336225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09908 -40.26723 -38.64046 -37.42127 -35.35188 -34.35452 -33.38002 -31.51587 -30.91267 -29.68602 -28.25389 -27.05208 -26.44011 -25.62949 -23.83301 -22.71033 -21.06501 -19.91982 -19.84864 -18.56085 -17.68168 -16.99533 -16.72423 -16.30287 -16.04684 -15.75720 -15.28999 -15.25935 -14.55331 -14.50257 -14.39833 -14.20087 -13.91844 -13.76789 -13.13278 -12.88823 -12.84323 -12.52387 -12.44169 -12.36526 -12.25572 -12.06281 -11.92278 -11.46865 -11.44353 -11.38541 -11.10327 -10.85808 -10.52998 -10.27431 -9.99240 -9.71957 -9.57857 -9.54713 -9.17559 -8.66542 -8.03478 -7.56775 -6.27739 -4.35252 1.20244 1.41780 2.21138 2.64459 3.02350 3.19458 3.25383 3.27753 3.34977 3.66233 3.87930 4.21459 4.28295 4.39233 4.43303 4.74930 4.93516 5.04205 5.06405 5.09216 5.22928 5.32611 5.33618 5.37015 5.52216 5.55563 5.62980 5.83734 5.87979 6.06309 6.10065 6.11966 6.32479 6.36113 6.37519 6.54847 6.86415 6.92923 7.01916 7.28987 7.40942 7.64652 7.65558 7.85726 7.94621 7.98405 8.55647 8.72008 9.31287 10.79767 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.002054 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.675976 B =13629.387308 C =13924.278436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.195 4.195 5 C 0.145 3.855 6 N -0.695 5.695 7 C 0.516 3.484 8 O -0.517 6.517 9 C 0.512 3.488 10 O -0.498 6.498 11 N -0.599 5.599 12 C 0.257 3.743 13 C -0.289 4.289 14 C 0.093 3.907 15 C -0.084 4.084 16 N -0.312 5.312 17 C 0.257 3.743 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.066 3.934 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.281 1.281 26 N -0.311 5.311 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.415 0.585 37 H 0.423 0.577 38 H 0.161 0.839 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 24.558 -11.569 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 C -0.178 4.178 4 C -0.213 4.213 5 C 0.023 3.977 6 N -0.349 5.349 7 C 0.296 3.704 8 O -0.392 6.392 9 C 0.292 3.708 10 O -0.371 6.371 11 N -0.247 5.247 12 C 0.005 3.995 13 C -0.320 4.320 14 C -0.039 4.039 15 C -0.142 4.142 16 N -0.095 5.095 17 C 0.139 3.861 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.141 5.141 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.251 0.749 37 H 0.260 0.740 38 H 0.178 0.822 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.960 23.359 -11.592 26.095 hybrid contribution 1.045 -0.311 -0.346 1.144 sum 0.085 23.048 -11.939 25.957 Atomic orbital electron populations 1.21005 0.92107 1.02867 1.02735 1.21772 0.96067 0.95115 0.97076 1.20897 0.99923 0.94654 1.02366 1.22611 1.00224 0.92834 1.05670 1.20493 0.98096 0.90375 0.88779 1.45687 1.38750 1.18372 1.32093 1.19899 0.83343 0.82294 0.84909 1.90790 1.28209 1.68211 1.52006 1.19905 0.83677 0.81794 0.85404 1.90712 1.27620 1.67601 1.51194 1.42001 1.36650 1.17661 1.28378 1.18887 0.96985 0.92587 0.91041 1.21234 1.05687 1.04616 1.00427 1.21083 0.94556 0.89559 0.98668 1.20344 0.96285 1.02553 0.95060 1.49072 1.23529 1.16312 1.20550 1.19751 0.99857 0.76656 0.89822 1.21344 1.25523 0.95530 1.15050 0.91654 1.24926 0.95794 0.98282 0.94781 1.69925 1.39196 1.22300 1.21482 0.86294 0.80134 0.81038 0.79185 1.19571 1.20629 1.20636 1.77331 1.20505 1.12345 1.03965 0.90901 0.91474 0.91075 0.91203 0.91388 0.91471 0.86279 0.90304 0.89954 0.74857 0.73994 0.82203 0.90304 0.90730 0.90752 0.92617 0.92846 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 8.93 36.01 0.32 -0.35 16 2 C -0.10 -0.56 6.05 -101.07 -0.61 -1.18 16 3 C -0.12 -0.53 10.00 36.01 0.36 -0.17 16 4 C -0.20 -1.21 9.21 -36.02 -0.33 -1.54 16 5 C 0.14 1.14 5.74 -5.19 -0.03 1.11 16 6 N -0.70 -6.64 5.54 -61.94 -0.34 -6.98 16 7 C 0.52 6.52 7.89 -11.63 -0.09 6.42 16 8 O -0.52 -7.50 16.48 5.49 0.09 -7.41 16 9 C 0.51 7.63 7.85 -11.64 -0.09 7.54 16 10 O -0.50 -8.01 13.60 5.47 0.07 -7.93 16 11 N -0.60 -9.94 5.43 -11.58 -0.06 -10.00 16 12 C 0.26 5.25 8.10 -154.55 -1.25 3.99 16 13 C -0.29 -5.76 9.51 -39.82 -0.38 -6.14 16 14 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 15 C -0.08 -1.38 10.11 36.01 0.36 -1.02 16 16 N -0.31 -7.33 3.59 -58.32 -0.21 -7.54 16 17 C 0.26 6.52 5.99 -5.19 -0.03 6.49 16 18 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 19 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 22 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 N -0.31 -7.20 12.59 31.41 0.40 -6.81 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.07 0.37 6.65 -51.92 -0.35 0.03 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 32 H 0.07 0.28 8.06 -51.93 -0.42 -0.14 16 33 H 0.12 0.65 8.05 -52.49 -0.42 0.23 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.65 5.71 -51.93 -0.30 0.36 16 36 H 0.41 3.50 7.93 -40.82 -0.32 3.17 16 37 H 0.42 6.37 8.29 -40.82 -0.34 6.04 16 38 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.23 7.07 -51.93 -0.37 0.87 16 42 H 0.06 1.39 7.04 -51.93 -0.37 1.02 16 43 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -31.81 378.45 -7.51 -39.32 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.11 Total: 6.59 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.76 Total: 3.17 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.52 Total: -55.49 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.16 Total: -15.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.81 -7.51 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276773494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.184 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds