Wall clock time and date at job start Tue Mar 31 2020 13:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50699 * 119.99638 * 2 1 4 4 C 1.30998 * 120.00373 * 180.02562 * 2 1 3 5 5 C 1.50703 * 119.99660 * 353.78795 * 4 2 1 6 6 N 1.46504 * 109.46682 * 236.01432 * 5 4 2 7 7 C 1.34772 * 119.99869 * 179.97438 * 6 5 4 8 8 O 1.21361 * 120.00113 * 359.72715 * 7 6 5 9 9 C 1.49352 * 119.99870 * 180.02562 * 7 6 5 10 10 O 1.21381 * 119.99614 * 359.72095 * 9 7 6 11 11 N 1.34767 * 119.99844 * 179.72757 * 9 7 6 12 12 C 1.39935 * 120.00045 * 180.02562 * 11 9 7 13 13 C 1.40458 * 125.97844 * 359.70999 * 12 11 9 14 14 C 1.35213 * 107.86877 * 179.89165 * 13 12 11 15 15 C 1.50700 * 126.06424 * 180.16191 * 14 13 12 16 16 N 1.34986 * 107.87231 * 0.37083 * 14 13 12 17 17 C 1.46503 * 125.96983 * 179.72977 * 16 14 13 18 18 C 1.50696 * 109.47371 * 270.01915 * 17 16 14 19 19 H 1.08004 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00369 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00332 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46885 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47501 * 119.99790 * 22 20 18 25 25 H 1.48499 * 109.47168 * 240.00005 * 22 20 18 26 26 N 1.31266 * 125.98154 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47028 * 265.03412 * 1 2 3 28 28 H 1.08992 * 109.47494 * 25.04109 * 1 2 3 29 29 H 1.09007 * 109.46890 * 145.04094 * 1 2 3 30 30 H 1.09002 * 109.47585 * 270.00424 * 3 2 1 31 31 H 1.09001 * 109.47172 * 30.00074 * 3 2 1 32 32 H 1.08995 * 109.47321 * 150.00089 * 3 2 1 33 33 H 1.08001 * 120.00084 * 173.77855 * 4 2 1 34 34 H 1.09004 * 109.47259 * 116.02110 * 5 4 2 35 35 H 1.08990 * 109.47507 * 356.01227 * 5 4 2 36 36 H 0.97003 * 119.99953 * 359.97438 * 6 5 4 37 37 H 0.97009 * 120.00253 * 359.97438 * 11 9 7 38 38 H 1.08002 * 126.06733 * 0.03862 * 13 12 11 39 39 H 1.08999 * 109.46734 * 270.24859 * 15 14 13 40 40 H 1.08992 * 109.47364 * 30.24526 * 15 14 13 41 41 H 1.08997 * 109.47150 * 150.25437 * 15 14 13 42 42 H 1.09006 * 109.47242 * 30.01974 * 17 16 14 43 43 H 1.09004 * 109.47204 * 150.01829 * 17 16 14 44 44 H 0.97000 * 120.00671 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1621 -1.1344 -0.0005 5 6 1.4152 -2.4358 0.1401 6 7 1.9473 -3.1831 1.2824 7 6 1.4283 -4.3852 1.6020 8 8 0.5169 -4.8463 0.9465 9 6 1.9703 -5.1467 2.7668 10 8 2.8816 -4.6853 3.4225 11 7 1.4477 -6.3462 3.0896 12 6 1.9552 -7.0596 4.1813 13 6 3.0052 -6.6492 5.0191 14 6 3.1920 -7.6105 5.9514 15 6 4.2149 -7.5865 7.0579 16 7 2.3029 -8.5977 5.7125 17 6 2.1638 -9.8357 6.4835 18 6 3.0547 -10.8981 5.8931 19 1 3.6633 -10.6737 5.0295 20 6 3.0920 -12.1567 6.4545 21 7 2.3505 -12.4301 7.5057 22 14 4.1957 -13.4738 5.7221 23 1 4.9216 -12.9170 4.5523 24 1 5.1745 -13.9241 6.7441 25 1 3.3681 -14.6276 5.2872 26 7 1.5371 -8.2320 4.5981 27 1 -0.3633 -0.0890 1.0238 28 1 -0.3634 0.9310 -0.4349 29 1 -0.3633 -0.8423 -0.5889 30 1 2.4421 1.6199 -1.0277 31 1 1.6713 2.0648 0.5138 32 1 3.2128 1.1749 0.5138 33 1 3.2373 -1.1371 -0.1019 34 1 1.5379 -3.0252 -0.7685 35 1 0.3567 -2.2317 0.3008 36 1 2.6731 -2.8127 1.8087 37 1 0.7192 -6.7149 2.5657 38 1 3.5627 -5.7280 4.9352 39 1 5.1405 -8.0427 6.7068 40 1 4.4073 -6.5550 7.3525 41 1 3.8369 -8.1446 7.9144 42 1 2.4527 -9.6534 7.5187 43 1 1.1271 -10.1706 6.4492 44 1 2.3770 -13.3155 7.9010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276773494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:36 Heat of formation + Delta-G solvation = -0.959910 kcal Electronic energy + Delta-G solvation = -25543.476998 eV Core-core repulsion = 21690.237920 eV Total energy + Delta-G solvation = -3853.239078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52199 -41.58213 -39.79501 -38.04957 -36.66585 -35.52064 -35.09455 -33.08816 -32.67473 -30.33660 -28.84266 -28.62503 -27.92352 -26.76566 -25.06437 -24.18105 -22.27763 -21.40988 -21.09458 -19.63747 -18.81048 -18.46746 -18.17947 -17.48267 -17.31565 -16.94377 -16.72165 -16.30192 -16.14329 -15.75126 -15.37314 -15.02445 -14.88238 -14.77530 -14.45396 -14.32124 -13.83473 -13.74381 -13.61148 -13.49378 -13.23319 -13.15162 -13.00224 -12.82403 -12.69720 -12.65398 -12.43821 -12.25672 -12.16348 -11.85132 -11.58939 -11.43304 -10.86897 -10.73801 -10.43903 -9.70778 -9.66908 -9.24206 -8.34010 -6.50966 0.02838 0.69279 1.06711 1.18812 1.36708 1.38985 1.51240 1.70289 1.89550 2.23117 2.33769 2.63593 2.96498 3.26439 3.72807 3.80424 4.02229 4.10741 4.25801 4.40030 4.43090 4.55146 4.64965 4.70401 4.71970 4.81150 4.84638 4.91574 4.92417 4.94712 4.95283 5.02646 5.08051 5.14875 5.19270 5.21572 5.53121 5.68438 5.78471 5.79959 5.82756 5.90531 6.16277 6.22187 6.54870 6.60806 6.77119 6.93454 7.19993 8.72653 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.002054 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.675976 B =13629.387308 C =13924.278436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.123 4.123 4 C -0.204 4.204 5 C 0.144 3.856 6 N -0.676 5.676 7 C 0.523 3.477 8 O -0.537 6.537 9 C 0.517 3.483 10 O -0.506 6.506 11 N -0.600 5.600 12 C 0.266 3.734 13 C -0.293 4.293 14 C 0.090 3.910 15 C -0.082 4.082 16 N -0.338 5.338 17 C 0.273 3.727 18 C -0.552 4.552 19 H 0.050 0.950 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.274 1.274 24 H -0.266 1.266 25 H -0.276 1.276 26 N -0.353 5.353 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.422 0.578 37 H 0.428 0.572 38 H 0.176 0.824 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.025 0.975 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 26.215 -12.332 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.179 4.179 4 C -0.222 4.222 5 C 0.022 3.978 6 N -0.330 5.330 7 C 0.303 3.697 8 O -0.414 6.414 9 C 0.298 3.702 10 O -0.379 6.379 11 N -0.250 5.250 12 C 0.012 3.988 13 C -0.323 4.323 14 C -0.040 4.040 15 C -0.140 4.140 16 N -0.120 5.120 17 C 0.154 3.846 18 C -0.591 4.591 19 H 0.068 0.932 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.191 1.191 25 H -0.201 1.201 26 N -0.184 5.184 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.260 0.740 37 H 0.267 0.733 38 H 0.193 0.807 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.345 25.073 -12.365 27.958 hybrid contribution 0.619 -0.640 -0.169 0.906 sum 0.964 24.434 -12.533 27.478 Atomic orbital electron populations 1.21056 0.91934 1.03437 1.02686 1.22003 0.96410 0.95581 0.95648 1.20940 0.99970 0.94001 1.03024 1.22544 1.00572 0.92025 1.07070 1.20622 0.98379 0.90961 0.87825 1.45715 1.38069 1.17063 1.32104 1.19431 0.83307 0.82922 0.84076 1.90794 1.29258 1.68892 1.52500 1.20366 0.83101 0.81084 0.85662 1.90688 1.27945 1.67649 1.51652 1.42117 1.37084 1.18101 1.27669 1.19190 0.96394 0.91836 0.91340 1.21468 1.05693 1.04981 1.00197 1.21819 0.94217 0.88530 0.99460 1.20500 0.95147 1.04902 0.93473 1.48857 1.25212 1.16612 1.21344 1.19313 0.97719 0.77445 0.90118 1.21453 1.25984 0.96740 1.14885 0.93198 1.25717 0.96949 1.00118 0.95011 1.70003 1.40097 1.23131 1.22313 0.85306 0.78481 0.78174 0.78496 1.19872 1.19085 1.20139 1.77245 1.22063 1.14139 1.04965 0.91082 0.90344 0.91300 0.90402 0.90750 0.91182 0.85397 0.90375 0.89886 0.73997 0.73310 0.80667 0.89636 0.87164 0.91239 0.92562 0.95715 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.93 71.24 0.64 -0.53 16 2 C -0.10 -0.90 6.05 -16.49 -0.10 -1.00 16 3 C -0.12 -0.80 10.00 71.24 0.71 -0.08 16 4 C -0.20 -2.15 9.21 25.65 0.24 -1.91 16 5 C 0.14 2.04 5.74 85.63 0.49 2.53 16 6 N -0.68 -11.82 5.54 -468.24 -2.59 -14.41 16 7 C 0.52 12.63 7.89 87.24 0.69 13.32 16 8 O -0.54 -15.16 16.48 -3.28 -0.05 -15.22 16 9 C 0.52 14.88 7.85 87.24 0.69 15.56 16 10 O -0.51 -15.49 13.60 -3.34 -0.05 -15.54 16 11 N -0.60 -19.80 5.43 -308.90 -1.68 -21.48 16 12 C 0.27 10.88 8.10 133.40 1.08 11.96 16 13 C -0.29 -11.47 9.51 22.11 0.21 -11.26 16 14 C 0.09 3.69 6.92 41.38 0.29 3.97 16 15 C -0.08 -2.60 10.11 71.24 0.72 -1.88 16 16 N -0.34 -16.23 3.59 -338.44 -1.22 -17.45 16 17 C 0.27 14.35 5.99 85.63 0.51 14.86 16 18 C -0.55 -30.88 9.39 25.60 0.24 -30.64 16 19 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 20 C 0.02 1.26 5.46 84.65 0.46 1.72 16 21 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 22 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 26 N -0.35 -16.83 12.59 -54.54 -0.69 -17.51 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 29 H 0.07 0.63 6.65 -2.38 -0.02 0.61 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.40 8.12 -2.39 -0.02 0.38 16 32 H 0.07 0.43 8.06 -2.39 -0.02 0.41 16 33 H 0.13 1.12 8.05 -2.91 -0.02 1.10 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.21 5.71 -2.39 -0.01 1.19 16 36 H 0.42 6.28 7.93 -92.71 -0.74 5.54 16 37 H 0.43 13.01 8.29 -92.70 -0.77 12.25 16 38 H 0.18 6.26 5.91 -2.91 -0.02 6.24 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.07 2.26 7.07 -2.39 -0.02 2.24 16 42 H 0.06 2.90 7.04 -2.38 -0.02 2.88 16 43 H 0.02 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.27 14.34 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -68.26 378.45 2.44 -65.82 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.46 Total: 25.37 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.86 Total: 16.63 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -5.89 Total: -122.18 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.10 Total: -30.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.26 2.44 -65.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276773494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.857 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds