Wall clock time and date at job start Tue Mar 31 2020 13:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35243 * 126.06753 * 2 1 4 4 C 1.40418 * 107.86443 * 180.24444 * 3 2 1 5 5 N 1.40157 * 125.96991 * 179.75792 * 4 3 2 6 6 C 1.34783 * 119.99827 * 0.02904 * 5 4 3 7 7 O 1.21284 * 120.00228 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99588 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.60681 * 264.51469 * 8 6 5 10 10 C 1.52986 * 109.60304 * 144.01562 * 8 6 5 11 11 C 1.51811 * 110.88739 * 326.69165 * 10 8 6 12 12 C 1.51789 * 113.82626 * 293.03597 * 11 10 8 13 13 C 1.53056 * 110.74740 * 66.78352 * 12 11 10 14 14 C 1.51431 * 108.49510 * 275.08377 * 13 12 11 15 15 O 1.21275 * 119.89266 * 251.20923 * 14 13 12 16 16 N 1.33371 * 120.21555 * 71.23018 * 14 13 12 17 17 N 1.31211 * 108.05561 * 359.76271 * 4 3 2 18 18 N 1.34966 * 126.07420 * 179.83437 * 2 1 3 19 19 C 1.46505 * 125.97116 * 0.02562 * 18 2 1 20 20 C 1.50701 * 109.47189 * 269.71643 * 19 18 2 21 21 H 1.07995 * 119.99840 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00071 * 180.02562 * 20 19 18 23 23 N 1.31521 * 119.99884 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99999 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47086 * 60.00102 * 24 22 20 26 26 H 1.48499 * 109.47278 * 299.99661 * 24 22 20 27 27 H 1.48509 * 109.47036 * 179.97438 * 24 22 20 28 28 H 1.09003 * 109.47130 * 270.16748 * 1 2 3 29 29 H 1.08995 * 109.47712 * 30.16717 * 1 2 3 30 30 H 1.09006 * 109.46968 * 150.17321 * 1 2 3 31 31 H 1.07995 * 126.06968 * 359.97438 * 3 2 1 32 32 H 0.96993 * 119.99858 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.19582 * 87.07195 * 10 8 6 34 34 H 1.08993 * 109.19667 * 206.35463 * 10 8 6 35 35 H 1.08995 * 108.62250 * 171.89315 * 11 10 8 36 36 H 1.08999 * 108.58416 * 54.14551 * 11 10 8 37 37 H 1.09002 * 109.22158 * 306.45323 * 12 11 10 38 38 H 1.09001 * 109.18498 * 187.08936 * 12 11 10 39 39 H 1.09000 * 109.63836 * 155.37919 * 13 12 11 40 40 H 1.08999 * 109.63339 * 34.78299 * 13 12 11 41 41 H 0.97004 * 119.78572 * 180.29178 * 16 14 13 42 42 H 1.09006 * 109.47144 * 149.71569 * 19 18 2 43 43 H 1.08998 * 109.47339 * 29.72029 * 19 18 2 44 44 H 0.97003 * 120.00028 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 -0.0057 5 7 4.7734 1.4750 -0.0124 6 6 4.6365 2.8158 -0.0131 7 8 3.5301 3.3125 -0.0085 8 6 5.8584 3.6979 -0.0197 9 1 6.1023 3.9926 1.0009 10 6 5.5881 4.9430 -0.8665 11 6 4.6626 4.6189 -2.0254 12 6 5.2765 3.6933 -3.0601 13 6 5.5125 2.3010 -2.4699 14 6 6.8471 2.3024 -1.7544 15 8 7.7866 1.6978 -2.2263 16 7 6.9927 2.9661 -0.6067 17 7 3.6337 -0.6575 -0.0038 18 7 2.3017 -1.0909 0.0032 19 6 1.8500 -2.4846 0.0067 20 6 1.7014 -2.9609 1.4287 21 1 1.9217 -2.2925 2.2478 22 6 1.2851 -4.2503 1.6838 23 7 1.0173 -5.0644 0.6862 24 14 1.1015 -4.8409 3.4464 25 1 0.1036 -3.9959 4.1502 26 1 2.4107 -4.7427 4.1403 27 1 0.6436 -6.2536 3.4499 28 1 -0.3633 0.0030 1.0277 29 1 -0.3634 0.8884 -0.5164 30 1 -0.3633 -0.8916 -0.5112 31 1 1.9719 2.1211 -0.0004 32 1 5.6583 1.0778 -0.0164 33 1 5.1265 5.7079 -0.2420 34 1 6.5321 5.3223 -1.2576 35 1 4.3797 5.5502 -2.5159 36 1 3.7617 4.1498 -1.6299 37 1 6.2280 4.1081 -3.3930 38 1 4.6025 3.6122 -3.9129 39 1 5.5270 1.5614 -3.2705 40 1 4.7180 2.0636 -1.7625 41 1 7.8515 2.9663 -0.1558 42 1 2.5825 -3.1052 -0.5097 43 1 0.8892 -2.5565 -0.5030 44 1 1.1130 -4.7578 -0.2291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279649340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:34 Heat of formation + Delta-G solvation = 0.075840 kcal Electronic energy + Delta-G solvation = -27981.763114 eV Core-core repulsion = 24128.568950 eV Total energy + Delta-G solvation = -3853.194164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.07788 -41.96558 -40.16797 -37.44782 -36.70305 -35.75183 -35.03431 -33.13038 -32.60192 -32.10553 -28.77115 -28.01556 -27.73929 -25.71985 -25.09178 -23.67450 -21.82739 -21.47220 -21.22273 -20.38906 -19.23483 -18.90162 -18.54915 -17.81454 -17.19866 -16.98629 -16.54101 -16.30327 -16.00604 -15.66954 -15.33712 -15.20387 -15.03584 -14.87077 -14.52395 -14.39254 -13.90715 -13.79965 -13.74319 -13.67788 -13.62638 -13.36511 -12.85105 -12.72378 -12.57682 -12.13438 -11.96865 -11.92036 -11.77880 -11.64861 -11.55320 -11.10406 -10.95950 -10.90238 -10.72243 -10.30666 -9.68347 -9.25018 -8.79126 -6.61220 0.73799 1.11730 1.23819 1.42887 1.50127 1.56045 1.77627 1.97106 2.11197 2.18585 2.47138 2.97934 3.20717 3.30473 3.66061 3.74787 3.79619 3.96776 4.00396 4.04510 4.24430 4.32445 4.42628 4.46407 4.63007 4.64985 4.72290 4.73014 4.80899 4.88655 4.92572 4.99132 5.01034 5.12071 5.14939 5.22399 5.51290 5.53817 5.69388 5.76269 5.87218 5.89223 6.07517 6.21933 6.36225 6.78949 6.91170 7.02162 7.15928 8.54083 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.003282 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.841908 B = 8528.230464 C = 8901.868825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.288 4.288 4 C 0.272 3.728 5 N -0.632 5.632 6 C 0.516 3.484 7 O -0.511 6.511 8 C 0.138 3.862 9 H 0.178 0.822 10 C -0.113 4.113 11 C -0.156 4.156 12 C -0.104 4.104 13 C -0.181 4.181 14 C 0.522 3.478 15 O -0.584 6.584 16 N -0.707 5.707 17 N -0.363 5.363 18 N -0.340 5.340 19 C 0.262 3.738 20 C -0.626 4.626 21 H 0.043 0.957 22 C -0.015 4.015 23 N -0.920 5.920 24 Si 1.119 2.881 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.275 1.275 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.179 0.821 32 H 0.415 0.585 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.421 0.579 42 H 0.016 0.984 43 H 0.048 0.952 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 24.137 -1.748 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.319 4.319 4 C 0.018 3.982 5 N -0.283 5.283 6 C 0.305 3.695 7 O -0.384 6.384 8 C 0.031 3.969 9 H 0.195 0.805 10 C -0.151 4.151 11 C -0.193 4.193 12 C -0.142 4.142 13 C -0.222 4.222 14 C 0.310 3.690 15 O -0.464 6.464 16 N -0.363 5.363 17 N -0.194 5.194 18 N -0.122 5.122 19 C 0.142 3.858 20 C -0.664 4.664 21 H 0.062 0.938 22 C -0.215 4.215 23 N -0.555 5.555 24 Si 0.940 3.060 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.200 1.200 28 H 0.102 0.898 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.196 0.804 32 H 0.252 0.748 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.261 0.739 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.523 21.760 -1.179 22.747 hybrid contribution 0.909 0.933 -1.130 1.724 sum 7.432 22.693 -2.308 23.990 Atomic orbital electron populations 1.20485 0.85246 1.04274 1.04024 1.21833 0.96733 0.86403 0.99395 1.21458 0.89169 1.00129 1.21133 1.19318 0.88808 0.89125 1.00950 1.43169 1.06860 1.05880 1.72373 1.21410 0.92827 0.80801 0.74490 1.90617 1.27161 1.73434 1.47187 1.21905 0.81268 0.90526 1.03233 0.80532 1.21667 1.02006 0.94781 0.96646 1.21633 1.00568 1.00847 0.96229 1.21188 1.02133 0.91685 0.99162 1.22778 0.95520 1.01700 1.02204 1.20720 0.90362 0.76923 0.80999 1.90758 1.43527 1.45223 1.66844 1.45925 1.15245 1.51930 1.23204 1.77226 0.99966 1.10639 1.31522 1.48505 1.01859 1.07135 1.54732 1.19325 0.94337 0.73895 0.98220 1.22314 1.51389 1.01060 0.91595 0.93833 1.27300 0.92000 0.92699 1.09520 1.70946 1.46044 1.38351 1.00198 0.82897 0.77608 0.76419 0.69122 1.18950 1.20389 1.20017 0.89777 0.86990 0.91737 0.80423 0.74803 0.87097 0.88301 0.89529 0.90385 0.91142 0.90319 0.90123 0.87775 0.73936 0.96598 0.93427 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.60 10.11 71.23 0.72 -1.88 16 2 C 0.09 3.47 6.92 41.38 0.29 3.76 16 3 C -0.29 -10.74 9.52 22.11 0.21 -10.53 16 4 C 0.27 10.45 7.72 133.33 1.03 11.48 16 5 N -0.63 -17.84 3.47 -307.50 -1.07 -18.91 16 6 C 0.52 11.19 4.16 87.66 0.36 11.56 16 7 O -0.51 -13.07 11.21 -3.04 -0.03 -13.11 16 8 C 0.14 1.56 3.80 44.11 0.17 1.73 16 9 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 10 C -0.11 -1.01 5.34 30.20 0.16 -0.85 16 11 C -0.16 -2.22 5.16 29.81 0.15 -2.06 16 12 C -0.10 -1.80 5.67 30.21 0.17 -1.62 16 13 C -0.18 -4.28 5.34 30.10 0.16 -4.12 16 14 C 0.52 12.19 5.60 88.11 0.49 12.68 16 15 O -0.58 -18.78 17.92 -3.02 -0.05 -18.83 16 16 N -0.71 -9.89 4.59 -445.72 -2.05 -11.94 16 17 N -0.36 -16.99 12.59 -54.45 -0.69 -17.67 16 18 N -0.34 -16.24 3.59 -338.43 -1.22 -17.46 16 19 C 0.26 13.75 5.31 85.63 0.45 14.20 16 20 C -0.63 -35.31 9.39 25.60 0.24 -35.07 16 21 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 22 C -0.01 -0.83 5.46 84.65 0.46 -0.37 16 23 N -0.92 -53.85 13.65 21.45 0.29 -53.55 16 24 Si 1.12 48.93 29.90 68.60 2.05 50.99 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.06 2.12 7.06 -2.38 -0.02 2.10 16 31 H 0.18 5.98 5.91 -2.91 -0.02 5.96 16 32 H 0.41 11.12 7.05 -92.71 -0.65 10.47 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.63 8.05 -2.39 -0.02 0.61 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.55 4.77 -2.39 -0.01 1.53 16 37 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 40 H 0.10 2.75 3.08 -2.39 -0.01 2.75 16 41 H 0.42 4.10 8.91 -92.71 -0.83 3.27 16 42 H 0.02 0.91 8.01 -2.38 -0.02 0.89 16 43 H 0.05 2.43 6.90 -2.39 -0.02 2.41 16 44 H 0.26 15.20 7.22 -92.71 -0.67 14.53 16 Total: -1.00 -76.73 347.36 2.00 -74.72 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -0.31 Total: 26.87 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.08 Total: -1.10 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -4.72 Total: -119.53 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.09 Total: -31.94 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.99 kcal Total: -76.73 2.00 -74.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279649340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.799 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds