Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 115.54875 * 2 1 4 4 C 1.53005 * 109.47256 * 34.32704 * 3 2 1 5 5 N 1.46496 * 109.47109 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00123 * 180.02562 * 5 4 3 7 7 O 1.21361 * 119.99633 * 0.02562 * 6 5 4 8 8 C 1.49338 * 120.00273 * 179.97438 * 6 5 4 9 9 O 1.21389 * 119.99925 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00038 * 179.97438 * 8 6 5 11 11 C 1.39936 * 119.99877 * 179.97438 * 10 8 6 12 12 C 1.40453 * 125.98062 * 359.97438 * 11 10 8 13 13 C 1.35215 * 107.86384 * 179.73491 * 12 11 10 14 14 N 1.34979 * 107.87970 * 0.42460 * 13 12 11 15 15 C 1.46500 * 125.97555 * 179.83561 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71172 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31273 * 125.97577 * 179.97438 * 11 10 8 25 25 C 1.53001 * 117.52089 * 145.69684 * 2 1 3 26 26 C 1.52995 * 117.50196 * 214.33082 * 2 1 3 27 27 H 1.09004 * 109.47206 * 85.58261 * 1 2 3 28 28 H 1.09001 * 109.47158 * 205.58214 * 1 2 3 29 29 H 1.09004 * 109.47168 * 325.58015 * 1 2 3 30 30 H 1.09008 * 109.47022 * 274.33211 * 3 2 1 31 31 H 1.08999 * 109.47096 * 154.33166 * 3 2 1 32 32 H 1.08998 * 109.46605 * 60.00471 * 4 3 2 33 33 H 1.09002 * 109.47010 * 300.00509 * 4 3 2 34 34 H 0.96999 * 120.00229 * 0.02562 * 5 4 3 35 35 H 0.96998 * 120.00451 * 0.02562 * 10 8 6 36 36 H 1.07999 * 126.06951 * 0.02562 * 12 11 10 37 37 H 1.08008 * 126.06407 * 180.28204 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.71934 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71705 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 41 41 H 1.08997 * 117.50185 * 214.97048 * 25 2 1 42 42 H 1.08997 * 117.49588 * 359.97438 * 25 2 1 43 43 H 1.09006 * 117.49816 * 359.96926 * 26 2 1 44 44 H 1.08995 * 117.50382 * 144.99240 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.3350 2.3544 0.8135 5 7 1.9665 3.6762 0.8129 6 6 1.3878 4.6999 1.4715 7 8 0.3437 4.5264 2.0653 8 6 2.0318 6.0473 1.4714 9 8 3.0764 6.2206 0.8779 10 7 1.4528 7.0710 2.1295 11 6 2.0565 8.3333 2.1299 12 6 3.2598 8.6727 1.4899 13 6 3.4979 9.9833 1.7222 14 7 2.4923 10.4579 2.4873 15 6 2.3572 11.8327 2.9752 16 6 1.0214 12.3871 2.5515 17 1 0.3410 11.7762 1.9767 18 6 0.6678 13.6740 2.8976 19 7 1.4942 14.4160 3.6021 20 14 -0.9882 14.3609 2.3730 21 1 -1.1276 15.7524 2.8726 22 1 -1.0792 14.3556 0.8908 23 1 -2.0741 13.5207 2.9387 24 7 1.5974 9.4076 2.7285 25 6 2.2369 -1.1209 0.7647 26 6 2.2365 -1.1207 -0.7653 27 1 -0.3634 0.0792 -1.0246 28 1 -0.3633 -0.9269 0.4438 29 1 -0.3634 0.8478 0.5809 30 1 2.2765 1.7417 -1.0248 31 1 3.1822 1.3088 0.4451 32 1 1.2484 1.9931 1.8382 33 1 0.3426 2.4260 0.3683 34 1 2.8012 3.8148 0.3386 35 1 0.6179 6.9326 2.6035 36 1 3.8819 8.0064 0.9107 37 1 4.3440 10.5496 1.3615 38 1 3.1546 12.4468 2.5566 39 1 2.4254 11.8406 4.0629 40 1 2.3540 14.0592 3.8747 41 1 3.1721 -0.8749 1.2677 42 1 1.6120 -1.8583 1.2683 43 1 1.6112 -1.8583 -1.2685 44 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280341451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = 32.351256 kcal Electronic energy + Delta-G solvation = -25335.253734 eV Core-core repulsion = 21483.459137 eV Total energy + Delta-G solvation = -3851.794597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15728 -40.31028 -39.10383 -38.41413 -35.77346 -34.80249 -33.68886 -31.13628 -30.96162 -29.50260 -28.58567 -26.82662 -25.50813 -23.63801 -22.92868 -22.72054 -21.37202 -20.65302 -19.91143 -19.27085 -18.28032 -17.23677 -17.10265 -16.49626 -16.37445 -15.92280 -15.68412 -15.35854 -15.06924 -14.60871 -14.25410 -14.11381 -13.80990 -13.73854 -13.38845 -13.30001 -12.73192 -12.55346 -12.53105 -12.35013 -12.14101 -12.03813 -11.82856 -11.68721 -11.48860 -11.19786 -10.85172 -10.64091 -10.59427 -10.16803 -10.11763 -10.09490 -9.63977 -9.56827 -9.04806 -8.60294 -8.32642 -7.65544 -6.60512 -4.34859 1.14389 1.98356 2.56696 2.95657 3.08448 3.23898 3.37422 3.39597 3.58147 3.58216 3.74763 4.11449 4.21225 4.31791 4.39903 4.40302 4.52585 4.68275 4.84816 5.03140 5.13043 5.18102 5.27500 5.31816 5.32578 5.42726 5.48276 5.55684 5.60605 5.61337 5.66000 5.79920 5.90820 6.00092 6.22607 6.31111 6.49873 6.69240 6.82648 7.15275 7.26291 7.54136 7.65274 7.74873 7.88206 8.30695 8.43194 8.58183 9.33261 10.77240 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030990 B = 0.001894 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.295225 B =14781.007826 C =15368.655320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.126 4.126 3 C -0.095 4.095 4 C 0.117 3.883 5 N -0.701 5.701 6 C 0.516 3.484 7 O -0.514 6.514 8 C 0.513 3.487 9 O -0.500 6.500 10 N -0.598 5.598 11 C 0.252 3.748 12 C -0.283 4.283 13 C 0.053 3.947 14 N -0.313 5.313 15 C 0.248 3.752 16 C -0.610 4.610 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.904 5.904 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.292 5.292 25 C -0.175 4.175 26 C -0.174 4.174 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.414 0.586 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -28.730 -7.971 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.126 4.126 3 C -0.133 4.133 4 C -0.006 4.006 5 N -0.355 5.355 6 C 0.296 3.704 7 O -0.389 6.389 8 C 0.293 3.707 9 O -0.373 6.373 10 N -0.247 5.247 11 C -0.001 4.001 12 C -0.315 4.315 13 C -0.097 4.097 14 N -0.095 5.095 15 C 0.130 3.870 16 C -0.648 4.648 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.539 5.539 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.123 5.123 25 C -0.211 4.211 26 C -0.211 4.211 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.250 0.750 35 H 0.261 0.739 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.345 -26.790 -7.112 27.751 hybrid contribution 1.677 -1.715 -0.547 2.460 sum 3.022 -28.505 -7.659 29.670 Atomic orbital electron populations 1.21518 0.91713 1.02701 1.02371 1.21342 0.95067 0.90232 1.05991 1.21318 0.98715 0.92348 1.00903 1.21635 0.97048 0.80398 1.01504 1.45720 1.27619 1.09441 1.52765 1.19850 0.85061 0.85327 0.80158 1.90799 1.22086 1.83831 1.42218 1.19937 0.85290 0.85172 0.80327 1.90707 1.21823 1.83173 1.41629 1.41999 1.26280 1.05835 1.50548 1.19018 0.94410 0.85478 1.01159 1.21524 1.00655 0.95940 1.13335 1.22583 0.95093 0.94977 0.97038 1.48871 1.14363 1.09373 1.36850 1.19814 0.99916 0.71721 0.95548 1.22100 1.01731 1.01506 1.39446 0.91779 1.25929 1.04822 0.93266 0.94093 1.70858 1.09635 1.39187 1.34213 0.83418 0.73831 0.76219 0.76176 1.20505 1.21220 1.21079 1.77433 1.15849 0.93644 1.25351 1.23207 1.02444 1.01061 0.94432 1.23048 1.02437 1.01028 0.94539 0.91975 0.92258 0.91103 0.90439 0.90677 0.90576 0.90205 0.74991 0.73873 0.82004 0.81235 0.93451 0.94588 0.92281 0.88704 0.88711 0.88680 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.49 37.16 0.35 -0.31 16 2 C -0.13 -0.66 2.47 -154.51 -0.38 -1.05 16 3 C -0.10 -0.50 5.52 -26.73 -0.15 -0.64 16 4 C 0.12 0.83 4.68 -4.04 -0.02 0.82 16 5 N -0.70 -6.21 5.55 -60.77 -0.34 -6.55 16 6 C 0.52 6.31 7.89 -11.64 -0.09 6.22 16 7 O -0.51 -7.34 16.48 5.49 0.09 -7.25 16 8 C 0.51 7.41 7.85 -11.64 -0.09 7.32 16 9 O -0.50 -7.74 13.60 5.46 0.07 -7.67 16 10 N -0.60 -9.77 5.43 -11.58 -0.06 -9.83 16 11 C 0.25 5.04 8.10 -154.55 -1.25 3.79 16 12 C -0.28 -5.38 9.60 -39.82 -0.38 -5.76 16 13 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 14 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 15 C 0.25 6.20 5.57 -5.19 -0.03 6.17 16 16 C -0.61 -17.06 9.24 -34.44 -0.32 -17.38 16 17 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 19 N -0.90 -26.16 13.65 55.43 0.76 -25.40 16 20 Si 1.08 24.90 29.90 -169.99 -5.08 19.82 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 N -0.29 -6.75 12.42 31.41 0.39 -6.36 16 25 C -0.17 -0.88 9.82 -26.73 -0.26 -1.14 16 26 C -0.17 -0.84 9.97 -26.73 -0.27 -1.10 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 29 H 0.07 0.40 5.59 -51.93 -0.29 0.11 16 30 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.36 7.90 -51.93 -0.41 -0.05 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.60 6.45 -51.93 -0.33 0.26 16 34 H 0.41 3.09 7.94 -40.82 -0.32 2.77 16 35 H 0.42 6.36 8.29 -40.82 -0.34 6.02 16 36 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 37 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 40 H 0.27 7.54 7.22 -40.82 -0.29 7.24 16 41 H 0.09 0.45 8.05 -51.93 -0.42 0.03 16 42 H 0.09 0.44 8.05 -51.93 -0.42 0.03 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -32.85 374.94 -8.05 -40.91 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.12 Total: 5.79 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.18 Total: -1.68 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.52 Total: -55.57 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.16 Total: -14.92 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.85 -8.05 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280341451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.257 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds