Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 115.54875 * 2 1 4 4 C 1.53005 * 109.47256 * 34.32704 * 3 2 1 5 5 N 1.46496 * 109.47109 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00123 * 180.02562 * 5 4 3 7 7 O 1.21361 * 119.99633 * 0.02562 * 6 5 4 8 8 C 1.49338 * 120.00273 * 179.97438 * 6 5 4 9 9 O 1.21389 * 119.99925 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00038 * 179.97438 * 8 6 5 11 11 C 1.39936 * 119.99877 * 179.97438 * 10 8 6 12 12 C 1.40453 * 125.98062 * 359.97438 * 11 10 8 13 13 C 1.35215 * 107.86384 * 179.73491 * 12 11 10 14 14 N 1.34979 * 107.87970 * 0.42460 * 13 12 11 15 15 C 1.46500 * 125.97555 * 179.83561 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71172 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31273 * 125.97577 * 179.97438 * 11 10 8 25 25 C 1.53001 * 117.52089 * 145.69684 * 2 1 3 26 26 C 1.52995 * 117.50196 * 214.33082 * 2 1 3 27 27 H 1.09004 * 109.47206 * 85.58261 * 1 2 3 28 28 H 1.09001 * 109.47158 * 205.58214 * 1 2 3 29 29 H 1.09004 * 109.47168 * 325.58015 * 1 2 3 30 30 H 1.09008 * 109.47022 * 274.33211 * 3 2 1 31 31 H 1.08999 * 109.47096 * 154.33166 * 3 2 1 32 32 H 1.08998 * 109.46605 * 60.00471 * 4 3 2 33 33 H 1.09002 * 109.47010 * 300.00509 * 4 3 2 34 34 H 0.96999 * 120.00229 * 0.02562 * 5 4 3 35 35 H 0.96998 * 120.00451 * 0.02562 * 10 8 6 36 36 H 1.07999 * 126.06951 * 0.02562 * 12 11 10 37 37 H 1.08008 * 126.06407 * 180.28204 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.71934 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71705 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 41 41 H 1.08997 * 117.50185 * 214.97048 * 25 2 1 42 42 H 1.08997 * 117.49588 * 359.97438 * 25 2 1 43 43 H 1.09006 * 117.49816 * 359.96926 * 26 2 1 44 44 H 1.08995 * 117.50382 * 144.99240 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.3350 2.3544 0.8135 5 7 1.9665 3.6762 0.8129 6 6 1.3878 4.6999 1.4715 7 8 0.3437 4.5264 2.0653 8 6 2.0318 6.0473 1.4714 9 8 3.0764 6.2206 0.8779 10 7 1.4528 7.0710 2.1295 11 6 2.0565 8.3333 2.1299 12 6 3.2598 8.6727 1.4899 13 6 3.4979 9.9833 1.7222 14 7 2.4923 10.4579 2.4873 15 6 2.3572 11.8327 2.9752 16 6 1.0214 12.3871 2.5515 17 1 0.3410 11.7762 1.9767 18 6 0.6678 13.6740 2.8976 19 7 1.4942 14.4160 3.6021 20 14 -0.9882 14.3609 2.3730 21 1 -1.1276 15.7524 2.8726 22 1 -1.0792 14.3556 0.8908 23 1 -2.0741 13.5207 2.9387 24 7 1.5974 9.4076 2.7285 25 6 2.2369 -1.1209 0.7647 26 6 2.2365 -1.1207 -0.7653 27 1 -0.3634 0.0792 -1.0246 28 1 -0.3633 -0.9269 0.4438 29 1 -0.3634 0.8478 0.5809 30 1 2.2765 1.7417 -1.0248 31 1 3.1822 1.3088 0.4451 32 1 1.2484 1.9931 1.8382 33 1 0.3426 2.4260 0.3683 34 1 2.8012 3.8148 0.3386 35 1 0.6179 6.9326 2.6035 36 1 3.8819 8.0064 0.9107 37 1 4.3440 10.5496 1.3615 38 1 3.1546 12.4468 2.5566 39 1 2.4254 11.8406 4.0629 40 1 2.3540 14.0592 3.8747 41 1 3.1721 -0.8749 1.2677 42 1 1.6120 -1.8583 1.2683 43 1 1.6112 -1.8583 -1.2685 44 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280341451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = 10.843537 kcal Electronic energy + Delta-G solvation = -25336.186379 eV Core-core repulsion = 21483.459137 eV Total energy + Delta-G solvation = -3852.727242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52453 -41.58195 -39.91149 -39.22190 -36.87029 -36.11461 -35.46836 -32.76673 -31.72106 -31.09985 -29.06310 -28.47453 -26.75488 -25.06439 -24.07788 -23.23420 -22.66307 -22.00574 -21.17720 -20.03754 -19.29377 -19.16695 -18.34509 -17.79086 -17.37124 -16.87305 -16.69253 -16.29366 -16.10609 -15.86946 -15.64052 -15.38840 -15.09286 -14.96208 -14.52876 -14.18906 -13.97043 -13.87433 -13.79601 -13.27029 -13.18357 -13.01233 -12.78844 -12.64344 -12.61760 -12.21849 -12.16129 -12.04226 -11.95855 -11.68632 -11.06863 -11.03599 -10.81425 -10.69811 -10.49338 -10.35181 -9.92566 -9.31052 -8.78911 -6.56409 0.00434 0.80137 1.04768 1.51178 1.57347 1.68157 1.73611 1.80053 2.20407 2.46604 2.53302 2.85204 3.00785 3.20440 3.66494 3.80048 3.83827 4.00609 4.09200 4.09415 4.20082 4.39516 4.50462 4.53549 4.61047 4.73640 4.76227 4.81897 4.83159 4.87702 4.90121 4.99337 5.07030 5.10627 5.16813 5.20987 5.30600 5.43564 5.52471 5.68691 5.76471 5.89371 6.11654 6.24687 6.40123 6.52156 6.75784 6.86157 7.18705 8.58286 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030990 B = 0.001894 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.295225 B =14781.007826 C =15368.655320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.133 4.133 3 C -0.088 4.088 4 C 0.116 3.884 5 N -0.681 5.681 6 C 0.523 3.477 7 O -0.537 6.537 8 C 0.518 3.482 9 O -0.506 6.506 10 N -0.601 5.601 11 C 0.261 3.739 12 C -0.285 4.285 13 C 0.060 3.940 14 N -0.339 5.339 15 C 0.258 3.742 16 C -0.623 4.623 17 H 0.045 0.955 18 C -0.018 4.018 19 N -0.922 5.922 20 Si 1.119 2.881 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.277 1.277 24 N -0.342 5.342 25 C -0.178 4.178 26 C -0.171 4.171 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.423 0.577 35 H 0.428 0.572 36 H 0.179 0.821 37 H 0.208 0.792 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -30.241 -9.380 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.133 4.133 3 C -0.125 4.125 4 C -0.006 4.006 5 N -0.335 5.335 6 C 0.302 3.698 7 O -0.414 6.414 8 C 0.299 3.701 9 O -0.379 6.379 10 N -0.251 5.251 11 C 0.006 3.994 12 C -0.315 4.315 13 C -0.088 4.088 14 N -0.121 5.121 15 C 0.139 3.861 16 C -0.661 4.661 17 H 0.063 0.937 18 C -0.218 4.218 19 N -0.558 5.558 20 Si 0.940 3.060 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.203 1.203 24 N -0.173 5.173 25 C -0.215 4.215 26 C -0.208 4.208 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.261 0.739 35 H 0.266 0.734 36 H 0.196 0.804 37 H 0.224 0.776 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.845 -28.364 -8.550 29.682 hybrid contribution 1.612 -1.439 -0.156 2.166 sum 3.456 -29.802 -8.706 31.240 Atomic orbital electron populations 1.21519 0.91871 1.02581 1.02409 1.21366 0.95036 0.90336 1.06603 1.21274 0.98580 0.91693 1.00967 1.21782 0.97397 0.79579 1.01808 1.45721 1.27462 1.09208 1.51064 1.19414 0.84806 0.84852 0.80699 1.90803 1.23064 1.83868 1.43657 1.20383 0.84970 0.85552 0.79234 1.90685 1.22154 1.83456 1.41655 1.42134 1.26641 1.05056 1.51251 1.19345 0.94449 0.85991 0.99591 1.21778 1.00415 0.96071 1.13266 1.23270 0.94892 0.95409 0.95278 1.48637 1.15841 1.08793 1.38818 1.19474 0.98908 0.73242 0.94509 1.22292 1.02876 1.01649 1.39325 0.93694 1.27235 1.07346 0.93719 0.93460 1.70948 1.09928 1.39567 1.35369 0.82890 0.70439 0.75895 0.76814 1.19949 1.19567 1.20290 1.77342 1.17488 0.94722 1.27715 1.23267 1.02558 1.00984 0.94724 1.23104 1.02584 1.00644 0.94441 0.91787 0.92038 0.91678 0.89666 0.89861 0.90867 0.90282 0.73919 0.73352 0.80361 0.77550 0.92350 0.96425 0.92897 0.88437 0.88611 0.88377 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.49 71.98 0.68 -0.48 16 2 C -0.13 -1.16 2.47 -52.18 -0.13 -1.29 16 3 C -0.09 -0.72 5.52 30.60 0.17 -0.55 16 4 C 0.12 1.45 4.68 86.38 0.40 1.86 16 5 N -0.68 -10.69 5.55 -464.52 -2.58 -13.27 16 6 C 0.52 12.07 7.89 87.23 0.69 12.75 16 7 O -0.54 -14.84 16.48 -3.28 -0.05 -14.89 16 8 C 0.52 14.28 7.85 87.24 0.69 14.96 16 9 O -0.51 -14.68 13.60 -3.37 -0.05 -14.73 16 10 N -0.60 -19.33 5.43 -308.90 -1.68 -21.01 16 11 C 0.26 10.31 8.10 133.40 1.08 11.40 16 12 C -0.28 -10.40 9.60 22.11 0.21 -10.19 16 13 C 0.06 2.23 11.43 83.51 0.95 3.18 16 14 N -0.34 -15.66 3.67 -351.84 -1.29 -16.95 16 15 C 0.26 13.10 5.57 85.64 0.48 13.58 16 16 C -0.62 -35.40 9.24 25.60 0.24 -35.16 16 17 H 0.04 2.68 7.81 -2.91 -0.02 2.65 16 18 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 19 N -0.92 -53.67 13.65 21.45 0.29 -53.38 16 20 Si 1.12 49.86 29.90 68.60 2.05 51.91 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 24 N -0.34 -16.04 12.42 -54.54 -0.68 -16.72 16 25 C -0.18 -1.50 9.82 30.60 0.30 -1.19 16 26 C -0.17 -1.32 9.97 30.59 0.31 -1.02 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.53 7.90 -2.39 -0.02 0.51 16 29 H 0.06 0.66 5.59 -2.39 -0.01 0.65 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 0.57 7.90 -2.39 -0.02 0.55 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.06 6.45 -2.39 -0.02 1.05 16 34 H 0.42 5.26 7.94 -92.71 -0.74 4.52 16 35 H 0.43 12.88 8.29 -92.71 -0.77 12.11 16 36 H 0.18 5.89 5.91 -2.91 -0.02 5.87 16 37 H 0.21 5.84 8.06 -2.91 -0.02 5.82 16 38 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 39 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 40 H 0.26 14.99 7.22 -92.71 -0.67 14.32 16 41 H 0.10 0.76 8.05 -2.39 -0.02 0.74 16 42 H 0.10 0.77 8.05 -2.39 -0.02 0.75 16 43 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -70.23 374.94 2.19 -68.04 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.36 Total: 23.67 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.53 Total: 7.32 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -5.93 Total: -121.32 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.10 Total: -29.62 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Total: -70.23 2.19 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280341451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.880 kcal (2) G-P(sol) polarization free energy of solvation -70.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds