Wall clock time and date at job start Tue Mar 31 2020 12:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 N 1.41604 * 114.00078 * 2 1 4 4 C 1.46497 * 119.99771 * 90.00302 * 3 2 1 5 5 C 1.50707 * 109.47012 * 254.99837 * 4 3 2 6 6 C 1.38238 * 119.99792 * 90.00154 * 5 4 3 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.97124 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00179 * 269.98090 * 5 4 3 11 11 C 1.34770 * 120.00029 * 269.99919 * 3 2 1 12 12 O 1.21350 * 119.99739 * 179.97438 * 11 3 2 13 13 C 1.49455 * 120.00195 * 0.02562 * 11 3 2 14 14 O 1.21342 * 119.99584 * 0.02562 * 13 11 3 15 15 N 1.34771 * 120.00016 * 179.97438 * 13 11 3 16 16 C 1.46500 * 119.99920 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.46942 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46872 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47163 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99688 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00134 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00056 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99859 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47388 * 89.99616 * 23 21 19 25 25 H 1.48504 * 109.47019 * 209.99502 * 23 21 19 26 26 H 1.48497 * 109.47152 * 329.99002 * 23 21 19 27 27 H 1.09004 * 109.47334 * 299.99444 * 1 2 3 28 28 H 1.09000 * 109.47420 * 59.99808 * 1 2 3 29 29 H 1.08998 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47643 * 135.00298 * 4 3 2 31 31 H 1.09000 * 109.47513 * 14.99462 * 4 3 2 32 32 H 1.08005 * 120.00068 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 36 36 H 1.07999 * 119.99968 * 359.97438 * 10 5 4 37 37 H 0.97005 * 120.00099 * 0.02562 * 15 13 11 38 38 H 1.08994 * 109.47518 * 300.00355 * 16 15 13 39 39 H 1.08997 * 109.47160 * 60.00625 * 16 15 13 40 40 H 1.08994 * 109.47364 * 299.99883 * 17 16 15 41 41 H 1.08992 * 109.47158 * 60.00560 * 17 16 15 42 42 H 1.09004 * 109.46838 * 299.99836 * 18 17 16 43 43 H 1.09004 * 109.47264 * 59.99941 * 18 17 16 44 44 H 0.97001 * 119.99706 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0048 1.2936 0.0000 4 6 2.3028 1.9627 1.2687 5 6 1.2808 3.0413 1.5200 6 6 0.1216 2.7472 2.2134 7 6 -0.8156 3.7367 2.4443 8 6 -0.5935 5.0205 1.9823 9 6 0.5631 5.3134 1.2843 10 6 1.5025 4.3250 1.0574 11 6 2.2790 1.9092 -1.1671 12 8 2.7721 3.0180 -1.1671 13 6 1.9745 1.2268 -2.4615 14 8 1.4801 0.1187 -2.4614 15 7 2.2482 1.8426 -3.6286 16 6 1.9502 1.1735 -4.8974 17 6 2.3547 2.0819 -6.0603 18 6 2.0430 1.3833 -7.3853 19 6 2.4407 2.2781 -8.5307 20 1 2.8730 3.2479 -8.3333 21 6 2.2537 1.8583 -9.8307 22 7 2.6004 2.6395 -10.8303 23 14 1.5066 0.1806 -10.1720 24 1 0.0296 0.3055 -10.2623 25 1 2.0382 -0.3462 -11.4547 26 1 1.8583 -0.7512 -9.0706 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.2965 2.4081 1.2201 31 1 2.2700 1.2352 2.0797 32 1 -0.0517 1.7442 2.5747 33 1 -1.7214 3.5068 2.9856 34 1 -1.3256 5.7936 2.1631 35 1 0.7347 6.3153 0.9195 36 1 2.4085 4.5550 0.5163 37 1 2.6431 2.7287 -3.6286 38 1 2.5086 0.2392 -4.9553 39 1 0.8824 0.9627 -4.9550 40 1 1.7966 3.0163 -6.0026 41 1 3.4226 2.2922 -6.0026 42 1 2.6008 0.4486 -7.4433 43 1 0.9749 1.1731 -7.4429 44 1 2.4685 2.3443 -11.7448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286363147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:18 Heat of formation + Delta-G solvation = -37.329920 kcal Electronic energy + Delta-G solvation = -26409.552686 eV Core-core repulsion = 22522.443735 eV Total energy + Delta-G solvation = -3887.108951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87757 -39.57148 -38.49115 -37.68590 -35.63922 -34.16837 -33.31819 -31.48075 -31.42803 -31.20650 -27.92515 -27.08505 -26.70262 -24.17241 -22.96030 -22.48673 -21.48250 -20.70445 -20.09628 -18.70228 -17.63333 -17.08585 -16.77979 -16.57217 -16.15911 -15.60375 -15.56502 -15.33497 -15.19966 -14.59615 -14.48533 -14.27008 -13.84549 -13.80421 -13.72626 -13.34358 -13.06417 -12.76439 -12.72040 -12.22572 -12.05763 -11.96796 -11.71592 -11.60760 -11.31327 -11.11454 -10.92284 -10.70844 -10.17565 -9.97569 -9.79371 -9.63263 -9.47720 -9.24453 -9.23078 -9.08710 -9.02305 -8.56509 -6.06959 -4.05887 0.76126 1.08174 1.28216 1.63216 2.77267 3.13916 3.30215 3.37974 3.41647 3.45467 4.11721 4.31096 4.43350 4.44739 4.63696 4.68790 4.75170 4.87398 5.02502 5.06343 5.12437 5.21778 5.26819 5.29974 5.42177 5.44857 5.57588 5.61079 5.73249 5.87332 5.93752 6.09602 6.18347 6.20287 6.22892 6.39219 6.55048 6.64983 6.73995 6.81786 7.19804 7.26207 7.33406 7.56414 7.74578 8.01329 8.49532 8.97160 9.54943 11.06277 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002422 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.446179 B =11556.327297 C =12182.210703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.118 6.118 3 N -0.454 5.454 4 C 0.158 3.842 5 C -0.125 4.125 6 C -0.104 4.104 7 C -0.128 4.128 8 C -0.111 4.111 9 C -0.124 4.124 10 C -0.085 4.085 11 C 0.518 3.482 12 O -0.501 6.501 13 C 0.499 3.501 14 O -0.505 6.505 15 N -0.694 5.694 16 C 0.114 3.886 17 C -0.115 4.115 18 C -0.010 4.010 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 0.085 30.907 31.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.121 6.121 3 N -0.232 5.232 4 C 0.039 3.961 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.146 4.146 8 C -0.130 4.130 9 C -0.142 4.142 10 C -0.103 4.103 11 C 0.302 3.698 12 O -0.375 6.375 13 C 0.278 3.722 14 O -0.380 6.380 15 N -0.347 5.347 16 C -0.009 4.009 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.560 4.560 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.164 -0.312 30.680 31.113 hybrid contribution -0.659 -0.397 -0.333 0.839 sum -5.823 -0.709 30.347 30.909 Atomic orbital electron populations 1.23350 0.81223 1.04003 1.01005 1.90751 1.20519 1.04174 1.96682 1.49979 1.57325 1.10718 1.05227 1.20750 0.97866 0.92968 0.84522 1.20196 0.96726 0.95156 1.00513 1.21063 0.93534 0.99224 0.98460 1.21123 0.99311 0.93339 1.00787 1.21248 0.97390 0.96757 0.97575 1.21254 0.94335 0.99687 0.98961 1.21366 0.99892 0.92134 0.96917 1.20650 0.79038 0.85194 0.84872 1.90759 1.42618 1.17968 1.86154 1.19810 0.81039 0.86448 0.84893 1.90776 1.41696 1.18447 1.87040 1.46009 1.61852 1.21518 1.05340 1.21818 1.01226 0.96872 0.80944 1.21737 1.01426 0.98355 0.93755 1.19503 0.96486 0.96611 0.92220 1.21089 1.41784 1.03772 0.89400 0.90939 1.25031 0.95036 0.97187 0.96234 1.69914 1.48195 1.36978 0.99038 0.86774 0.79683 0.84984 0.77840 1.20263 1.21362 1.18886 0.93287 0.92594 0.87443 0.87813 0.87833 0.86153 0.85994 0.86017 0.85768 0.84617 0.75322 0.91127 0.91266 0.91880 0.91784 0.96232 0.96715 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.77 101.05 1.09 1.11 16 2 O -0.12 -1.38 9.78 -33.90 -0.33 -1.71 16 3 N -0.45 -5.14 3.01 -61.91 -0.19 -5.32 16 4 C 0.16 1.33 5.85 -5.19 -0.03 1.30 16 5 C -0.12 -1.11 5.25 -104.62 -0.55 -1.66 16 6 C -0.10 -0.81 8.93 -39.58 -0.35 -1.16 16 7 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 8 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 10 C -0.08 -0.81 8.78 -39.58 -0.35 -1.16 16 11 C 0.52 6.86 7.64 -11.59 -0.09 6.78 16 12 O -0.50 -6.79 14.01 5.50 0.08 -6.71 16 13 C 0.50 7.44 7.87 -11.59 -0.09 7.35 16 14 O -0.50 -8.47 13.77 -16.92 -0.23 -8.70 16 15 N -0.69 -10.05 5.55 -60.73 -0.34 -10.39 16 16 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 17 C -0.11 -2.12 5.27 -26.73 -0.14 -2.27 16 18 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 19 C -0.52 -14.66 9.66 -34.44 -0.33 -15.00 16 20 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 23 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 27 H 0.05 0.36 6.47 -51.93 -0.34 0.03 16 28 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.82 7.84 -51.93 -0.41 0.41 16 31 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.12 0.72 7.26 -52.48 -0.38 0.34 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.14 1.37 6.76 -52.49 -0.35 1.01 16 37 H 0.41 5.40 7.95 -40.82 -0.32 5.07 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -32.93 371.39 -7.93 -40.85 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.34 Total: 1.89 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.27 Total: -5.50 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.25 Total: -42.64 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.49 Total: -17.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.93 -7.93 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286363147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.524 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds