Wall clock time and date at job start Tue Mar 31 2020 12:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 N 1.41604 * 114.00078 * 2 1 4 4 C 1.46497 * 119.99771 * 90.00302 * 3 2 1 5 5 C 1.50707 * 109.47012 * 254.99837 * 4 3 2 6 6 C 1.38238 * 119.99792 * 90.00154 * 5 4 3 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.97124 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00179 * 269.98090 * 5 4 3 11 11 C 1.34770 * 120.00029 * 269.99919 * 3 2 1 12 12 O 1.21350 * 119.99739 * 179.97438 * 11 3 2 13 13 C 1.49455 * 120.00195 * 0.02562 * 11 3 2 14 14 O 1.21342 * 119.99584 * 0.02562 * 13 11 3 15 15 N 1.34771 * 120.00016 * 179.97438 * 13 11 3 16 16 C 1.46500 * 119.99920 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.46942 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46872 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47163 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99688 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00134 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00056 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99859 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47388 * 89.99616 * 23 21 19 25 25 H 1.48504 * 109.47019 * 209.99502 * 23 21 19 26 26 H 1.48497 * 109.47152 * 329.99002 * 23 21 19 27 27 H 1.09004 * 109.47334 * 299.99444 * 1 2 3 28 28 H 1.09000 * 109.47420 * 59.99808 * 1 2 3 29 29 H 1.08998 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47643 * 135.00298 * 4 3 2 31 31 H 1.09000 * 109.47513 * 14.99462 * 4 3 2 32 32 H 1.08005 * 120.00068 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 36 36 H 1.07999 * 119.99968 * 359.97438 * 10 5 4 37 37 H 0.97005 * 120.00099 * 0.02562 * 15 13 11 38 38 H 1.08994 * 109.47518 * 300.00355 * 16 15 13 39 39 H 1.08997 * 109.47160 * 60.00625 * 16 15 13 40 40 H 1.08994 * 109.47364 * 299.99883 * 17 16 15 41 41 H 1.08992 * 109.47158 * 60.00560 * 17 16 15 42 42 H 1.09004 * 109.46838 * 299.99836 * 18 17 16 43 43 H 1.09004 * 109.47264 * 59.99941 * 18 17 16 44 44 H 0.97001 * 119.99706 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0048 1.2936 0.0000 4 6 2.3028 1.9627 1.2687 5 6 1.2808 3.0413 1.5200 6 6 0.1216 2.7472 2.2134 7 6 -0.8156 3.7367 2.4443 8 6 -0.5935 5.0205 1.9823 9 6 0.5631 5.3134 1.2843 10 6 1.5025 4.3250 1.0574 11 6 2.2790 1.9092 -1.1671 12 8 2.7721 3.0180 -1.1671 13 6 1.9745 1.2268 -2.4615 14 8 1.4801 0.1187 -2.4614 15 7 2.2482 1.8426 -3.6286 16 6 1.9502 1.1735 -4.8974 17 6 2.3547 2.0819 -6.0603 18 6 2.0430 1.3833 -7.3853 19 6 2.4407 2.2781 -8.5307 20 1 2.8730 3.2479 -8.3333 21 6 2.2537 1.8583 -9.8307 22 7 2.6004 2.6395 -10.8303 23 14 1.5066 0.1806 -10.1720 24 1 0.0296 0.3055 -10.2623 25 1 2.0382 -0.3462 -11.4547 26 1 1.8583 -0.7512 -9.0706 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.2965 2.4081 1.2201 31 1 2.2700 1.2352 2.0797 32 1 -0.0517 1.7442 2.5747 33 1 -1.7214 3.5068 2.9856 34 1 -1.3256 5.7936 2.1631 35 1 0.7347 6.3153 0.9195 36 1 2.4085 4.5550 0.5163 37 1 2.6431 2.7287 -3.6286 38 1 2.5086 0.2392 -4.9553 39 1 0.8824 0.9627 -4.9550 40 1 1.7966 3.0163 -6.0026 41 1 3.4226 2.2922 -6.0026 42 1 2.6008 0.4486 -7.4433 43 1 0.9749 1.1731 -7.4429 44 1 2.4685 2.3443 -11.7448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286363147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:17 Heat of formation + Delta-G solvation = -57.419873 kcal Electronic energy + Delta-G solvation = -26410.423851 eV Core-core repulsion = 22522.443735 eV Total energy + Delta-G solvation = -3887.980117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87332 -40.36963 -39.45723 -38.57667 -37.06218 -35.23239 -34.84854 -33.29887 -32.16498 -31.80798 -29.42470 -27.98162 -27.60134 -25.51070 -23.78627 -23.54670 -22.34875 -22.20171 -21.16288 -19.83652 -18.91036 -18.44137 -17.88396 -17.51153 -17.07960 -16.80835 -16.63202 -16.18002 -15.98319 -15.95231 -15.72456 -15.29136 -15.11041 -14.83966 -14.77784 -14.31456 -14.14028 -13.82801 -13.73854 -13.61064 -13.37898 -13.06209 -12.76607 -12.71598 -12.55207 -12.26925 -11.94673 -11.87935 -11.78772 -11.61692 -11.50511 -11.33874 -10.75782 -10.74531 -10.37688 -10.25185 -9.84007 -9.75232 -8.28654 -6.33052 0.05444 0.24022 0.47599 0.83835 1.38079 1.39893 1.51695 1.69573 2.03652 2.37315 2.83315 3.07045 3.07247 3.68507 3.75173 3.92096 4.01669 4.10671 4.16681 4.19515 4.28259 4.36656 4.40967 4.47154 4.49240 4.62714 4.70073 4.72977 4.81217 4.85780 5.01302 5.02852 5.04295 5.14033 5.19237 5.45691 5.51433 5.54846 5.59490 5.60174 5.64833 5.85514 6.06637 6.23933 6.27890 6.53831 6.75244 6.86708 7.31697 8.87944 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002422 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.446179 B =11556.327297 C =12182.210703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.132 6.132 3 N -0.447 5.447 4 C 0.156 3.844 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.131 4.131 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.103 4.103 11 C 0.517 3.483 12 O -0.510 6.510 13 C 0.497 3.503 14 O -0.524 6.524 15 N -0.691 5.691 16 C 0.127 3.873 17 C -0.104 4.104 18 C -0.010 4.010 19 C -0.532 4.532 20 H 0.035 0.965 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.950 3.050 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.244 1.244 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.417 0.583 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 -1.592 33.154 33.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.136 6.136 3 N -0.225 5.225 4 C 0.038 3.962 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.149 4.149 8 C -0.135 4.135 9 C -0.157 4.157 10 C -0.122 4.122 11 C 0.300 3.700 12 O -0.385 6.385 13 C 0.277 3.723 14 O -0.400 6.400 15 N -0.344 5.344 16 C 0.004 3.996 17 C -0.142 4.142 18 C -0.048 4.048 19 C -0.570 4.570 20 H 0.053 0.947 21 C -0.194 4.194 22 N -0.593 5.593 23 Si 0.773 3.227 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.168 1.168 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.254 0.746 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.601 -1.982 32.975 33.688 hybrid contribution -0.209 0.222 -0.971 1.018 sum -6.810 -1.760 32.004 32.768 Atomic orbital electron populations 1.23474 0.79962 1.05199 1.00955 1.90725 1.21854 1.04282 1.96733 1.50053 1.56503 1.10499 1.05438 1.20988 0.97936 0.93454 0.83828 1.20256 0.97400 0.94812 1.01042 1.21328 0.92956 1.00347 0.97854 1.21470 1.00016 0.93044 1.00388 1.21546 0.97319 0.97680 0.97001 1.21452 0.94763 1.00006 0.99487 1.21395 0.99951 0.93086 0.97737 1.20319 0.79574 0.85152 0.84939 1.90766 1.43306 1.18167 1.86300 1.20135 0.80427 0.86236 0.85476 1.90758 1.42556 1.19288 1.87440 1.45882 1.61830 1.21749 1.04924 1.21512 1.01241 0.96110 0.80721 1.21514 1.01491 0.98408 0.92739 1.19456 0.96829 0.96046 0.92498 1.21471 1.41015 1.03177 0.91367 0.94697 1.26026 0.95686 1.01688 0.96008 1.70071 1.50101 1.39437 0.99646 0.85659 0.79045 0.79808 0.78163 1.19171 1.21182 1.16755 0.91156 0.94707 0.85648 0.87618 0.85229 0.84128 0.83697 0.84157 0.85087 0.85919 0.74578 0.91126 0.91049 0.91842 0.91823 0.95714 0.95819 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.77 113.37 1.22 1.24 16 2 O -0.13 -2.87 9.78 -17.35 -0.17 -3.04 16 3 N -0.45 -9.51 3.01 -468.13 -1.41 -10.92 16 4 C 0.16 2.38 5.85 85.64 0.50 2.88 16 5 C -0.13 -2.19 5.25 -19.86 -0.10 -2.29 16 6 C -0.11 -1.39 8.93 22.27 0.20 -1.19 16 7 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 8 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 9 C -0.14 -2.32 10.05 22.27 0.22 -2.10 16 10 C -0.10 -1.94 8.78 22.27 0.20 -1.75 16 11 C 0.52 13.31 7.64 87.27 0.67 13.98 16 12 O -0.51 -13.69 14.01 -3.25 -0.05 -13.73 16 13 C 0.50 14.41 7.87 87.27 0.69 15.09 16 14 O -0.52 -17.04 13.77 18.22 0.25 -16.79 16 15 N -0.69 -19.38 5.55 -464.42 -2.58 -21.95 16 16 C 0.13 3.92 5.67 86.38 0.49 4.41 16 17 C -0.10 -3.76 5.27 30.60 0.16 -3.59 16 18 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 19 C -0.53 -30.28 9.66 25.60 0.25 -30.04 16 20 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 21 C 0.00 0.15 5.47 84.65 0.46 0.61 16 22 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 23 Si 0.95 44.00 27.47 68.60 1.88 45.88 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 27 H 0.07 0.85 6.47 -2.39 -0.02 0.83 16 28 H 0.03 0.73 7.45 -2.39 -0.02 0.71 16 29 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.57 7.84 -2.38 -0.02 1.55 16 31 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.14 1.20 7.26 -2.91 -0.02 1.17 16 33 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.12 2.55 6.76 -2.91 -0.02 2.53 16 37 H 0.42 10.70 7.95 -92.70 -0.74 9.96 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 43 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -71.43 371.39 3.97 -67.45 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.22 Total: 18.42 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 5.52 Total: -5.88 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -3.69 Total: -92.32 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: 0.04 Total: -33.56 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -71.43 3.97 -67.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286363147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.035 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds