Wall clock time and date at job start Tue Mar 31 2020 13:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35247 * 126.07019 * 2 1 4 4 C 1.40405 * 107.86389 * 180.15637 * 3 2 1 5 5 N 1.40196 * 125.96697 * 179.82481 * 4 3 2 6 6 C 1.34776 * 120.00270 * 359.72115 * 5 4 3 7 7 O 1.21593 * 119.99763 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00009 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00089 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47239 * 179.97438 * 9 8 6 11 11 C 1.29982 * 118.56578 * 94.99677 * 10 9 8 12 12 C 1.50389 * 122.51161 * 180.38759 * 11 10 9 13 13 C 1.53125 * 109.59556 * 343.37807 * 12 11 10 14 14 O 1.43308 * 108.41399 * 47.82310 * 13 12 11 15 15 C 1.42898 * 113.02169 * 291.85667 * 14 13 12 16 16 N 1.31210 * 108.05631 * 359.56730 * 4 3 2 17 17 N 1.34963 * 126.07069 * 179.67991 * 2 1 3 18 18 C 1.46508 * 125.97460 * 359.97438 * 17 2 1 19 19 C 1.50698 * 109.46996 * 270.00060 * 18 17 2 20 20 H 1.07997 * 120.00268 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99810 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99660 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47614 * 59.99830 * 23 21 19 25 25 H 1.48503 * 109.47299 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47015 * 299.99796 * 23 21 19 27 27 H 1.09000 * 109.46882 * 270.32341 * 1 2 3 28 28 H 1.08997 * 109.47226 * 30.31931 * 1 2 3 29 29 H 1.08998 * 109.47404 * 150.32553 * 1 2 3 30 30 H 1.08001 * 126.06643 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99153 * 179.71638 * 5 4 3 32 32 H 0.97007 * 119.99886 * 0.02562 * 8 6 5 33 33 H 1.08992 * 109.47205 * 59.99515 * 9 8 6 34 34 H 1.09000 * 109.46844 * 299.99474 * 9 8 6 35 35 H 1.08004 * 118.74794 * 0.41194 * 11 10 9 36 36 H 1.08997 * 109.45433 * 223.33711 * 12 11 10 37 37 H 1.09003 * 109.42661 * 103.40157 * 12 11 10 38 38 H 1.09002 * 109.68336 * 167.56430 * 13 12 11 39 39 H 1.08999 * 109.68109 * 288.08078 * 13 12 11 40 40 H 1.09004 * 109.32593 * 289.92600 * 15 14 13 41 41 H 1.08996 * 109.25753 * 170.27764 * 15 14 13 42 42 H 1.08996 * 109.47254 * 30.00159 * 18 17 2 43 43 H 1.09000 * 109.46539 * 150.00506 * 18 17 2 44 44 H 0.97001 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6371 0.6545 -0.0036 5 7 4.7738 1.4751 -0.0083 6 6 4.6370 2.8159 -0.0153 7 8 3.5277 3.3138 -0.0180 8 7 5.7298 3.6048 -0.0192 9 6 5.5811 5.0621 -0.0274 10 6 6.9436 5.7061 -0.0298 11 6 7.4640 6.0553 -1.1686 12 6 8.8203 6.6962 -1.2748 13 6 9.2484 7.2230 0.0978 14 8 9.0264 6.1917 1.0678 15 6 7.6409 5.9167 1.2840 16 7 3.6337 -0.6576 0.0037 17 7 2.3017 -1.0909 0.0061 18 6 1.8501 -2.4846 0.0144 19 6 1.6957 -2.9541 1.4380 20 1 1.9127 -2.2818 2.2549 21 6 1.2784 -4.2424 1.6977 22 7 1.0146 -5.0611 0.7029 23 14 1.0864 -4.8242 3.4623 24 1 0.0850 -3.9759 4.1571 25 1 0.6299 -6.2373 3.4707 26 1 2.3923 -4.7222 4.1620 27 1 -0.3633 0.0058 1.0277 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3634 -0.8929 -0.5087 30 1 1.9721 2.1211 -0.0004 31 1 5.6587 1.0778 -0.0064 32 1 6.6148 3.2075 -0.0174 33 1 5.0327 5.3764 0.8605 34 1 5.0335 5.3665 -0.9194 35 1 6.9007 5.8788 -2.0730 36 1 8.7765 7.5232 -1.9835 37 1 9.5437 5.9585 -1.6222 38 1 10.3061 7.4856 0.0767 39 1 8.6570 8.1018 0.3544 40 1 7.1833 6.7577 1.8052 41 1 7.5435 5.0180 1.8930 42 1 0.8913 -2.5589 -0.4987 43 1 2.5846 -3.1075 -0.4960 44 1 0.7214 -5.9675 0.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287068946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:19 Heat of formation + Delta-G solvation = 19.879621 kcal Electronic energy + Delta-G solvation = -25807.890815 eV Core-core repulsion = 21955.555407 eV Total energy + Delta-G solvation = -3852.335408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77035 -40.07750 -39.39320 -36.00065 -34.71397 -33.74295 -33.28861 -31.85869 -31.23310 -30.67420 -27.07984 -26.38344 -26.16295 -25.84551 -23.47404 -22.85636 -21.50153 -20.00095 -19.58648 -18.65303 -17.83070 -16.80339 -16.69653 -16.60087 -16.35588 -15.65228 -15.58912 -15.14949 -14.73530 -14.48116 -14.25490 -14.16770 -13.98052 -13.55177 -13.36188 -12.98495 -12.85552 -12.70071 -12.44989 -12.25415 -12.13862 -11.78163 -11.63954 -11.37037 -11.10047 -11.07348 -10.79652 -10.44212 -10.23798 -10.08194 -10.04135 -9.69653 -9.53421 -9.43176 -9.24562 -8.62028 -7.88720 -7.37910 -6.23354 -4.30840 1.40585 2.54139 2.67284 3.11599 3.24773 3.28402 3.32794 3.40904 3.66962 3.85735 4.12863 4.25523 4.28800 4.38375 4.43335 4.66733 4.83910 4.94085 5.00324 5.10185 5.18731 5.26662 5.35099 5.43324 5.43970 5.49276 5.73750 5.93330 5.94936 6.14282 6.18786 6.25654 6.29355 6.48634 6.61352 6.64521 6.64877 6.96925 7.07841 7.16038 7.54961 7.69289 7.91316 7.96364 8.09845 8.59954 8.70058 8.78162 9.35172 10.83777 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.002118 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.021156 B =13217.622981 C =13718.521337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.643 5.643 6 C 0.713 3.287 7 O -0.567 6.567 8 N -0.742 5.742 9 C 0.180 3.820 10 C -0.185 4.185 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.055 3.945 14 O -0.376 6.376 15 C 0.097 3.903 16 N -0.324 5.324 17 N -0.318 5.318 18 C 0.259 3.741 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.275 1.275 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.406 0.594 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.895 23.596 -3.636 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.293 5.293 6 C 0.412 3.588 7 O -0.442 6.442 8 N -0.399 5.399 9 C 0.057 3.943 10 C -0.186 4.186 11 C -0.136 4.136 12 C -0.167 4.167 13 C -0.022 4.022 14 O -0.295 6.295 15 C 0.020 3.980 16 N -0.155 5.155 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.178 0.822 31 H 0.241 0.759 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.624 22.605 -3.582 26.138 hybrid contribution 0.157 -0.093 0.713 0.736 sum 12.780 22.512 -2.869 26.046 Atomic orbital electron populations 1.20326 0.87933 1.02774 1.03133 1.21060 0.94880 0.87178 1.00972 1.21231 0.89693 0.99800 1.21322 1.18660 0.86545 0.89251 1.02681 1.41385 1.07629 1.03700 1.76610 1.15620 0.84673 0.80415 0.78087 1.90877 1.23502 1.73494 1.56306 1.45069 1.07721 1.06030 1.81096 1.20042 0.93103 0.77956 1.03245 1.21724 0.97581 1.02823 0.96439 1.22309 0.96387 0.97236 0.97619 1.21185 0.95367 1.01325 0.98787 1.22677 1.01934 0.90081 0.87464 1.88165 1.23794 1.56950 1.60582 1.21380 0.81189 1.01826 0.93561 1.77251 0.99937 1.08329 1.29935 1.48960 1.00889 1.07736 1.52486 1.19669 0.95934 0.71381 0.98867 1.21288 1.46766 0.97940 0.91381 0.91821 1.24929 0.94712 0.96055 0.98128 1.69910 1.44941 1.06964 1.31206 0.86410 0.78796 0.77626 0.83814 1.19936 1.20981 1.20012 0.90459 0.90850 0.90900 0.82247 0.75918 0.76807 0.90681 0.90725 0.86560 0.89624 0.89453 0.88418 0.92613 0.91564 0.87703 0.92815 0.93059 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.01 0.36 -1.09 16 2 C 0.09 1.94 6.93 -82.28 -0.57 1.37 16 3 C -0.29 -6.10 9.52 -39.83 -0.38 -6.48 16 4 C 0.28 5.86 8.11 -154.36 -1.25 4.61 16 5 N -0.64 -10.21 5.45 -15.51 -0.08 -10.30 16 6 C 0.71 10.61 8.53 -86.92 -0.74 9.87 16 7 O -0.57 -10.38 13.47 5.28 0.07 -10.31 16 8 N -0.74 -7.52 5.55 -66.42 -0.37 -7.89 16 9 C 0.18 1.58 5.73 -5.19 -0.03 1.55 16 10 C -0.18 -1.30 5.29 -101.01 -0.53 -1.84 16 11 C -0.12 -0.74 9.53 -35.89 -0.34 -1.09 16 12 C -0.13 -0.66 6.36 -27.97 -0.18 -0.83 16 13 C 0.06 0.31 6.89 37.22 0.26 0.56 16 14 O -0.38 -3.13 10.85 -35.23 -0.38 -3.51 16 15 C 0.10 0.69 6.76 35.78 0.24 0.93 16 16 N -0.32 -7.60 12.59 31.44 0.40 -7.20 16 17 N -0.32 -7.67 3.59 -58.32 -0.21 -7.88 16 18 C 0.26 6.72 5.99 -5.19 -0.03 6.69 16 19 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 23 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 30 H 0.16 3.30 5.91 -52.49 -0.31 2.99 16 31 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 32 H 0.40 3.12 8.48 -40.82 -0.35 2.77 16 33 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 34 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 35 H 0.12 0.70 7.83 -52.48 -0.41 0.29 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.27 8.10 -51.93 -0.42 -0.15 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -33.72 370.76 -9.23 -42.95 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.34 Total: 6.01 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -3.62 Total: 0.75 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.47 Total: -57.74 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.31 Total: -13.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.72 -9.23 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287068946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.833 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds