Wall clock time and date at job start Tue Mar 31 2020 13:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35247 * 126.07019 * 2 1 4 4 C 1.40405 * 107.86389 * 180.15637 * 3 2 1 5 5 N 1.40196 * 125.96697 * 179.82481 * 4 3 2 6 6 C 1.34776 * 120.00270 * 359.72115 * 5 4 3 7 7 O 1.21593 * 119.99763 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00009 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00089 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47239 * 179.97438 * 9 8 6 11 11 C 1.29982 * 118.56578 * 94.99677 * 10 9 8 12 12 C 1.50389 * 122.51161 * 180.38759 * 11 10 9 13 13 C 1.53125 * 109.59556 * 343.37807 * 12 11 10 14 14 O 1.43308 * 108.41399 * 47.82310 * 13 12 11 15 15 C 1.42898 * 113.02169 * 291.85667 * 14 13 12 16 16 N 1.31210 * 108.05631 * 359.56730 * 4 3 2 17 17 N 1.34963 * 126.07069 * 179.67991 * 2 1 3 18 18 C 1.46508 * 125.97460 * 359.97438 * 17 2 1 19 19 C 1.50698 * 109.46996 * 270.00060 * 18 17 2 20 20 H 1.07997 * 120.00268 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99810 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99660 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47614 * 59.99830 * 23 21 19 25 25 H 1.48503 * 109.47299 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47015 * 299.99796 * 23 21 19 27 27 H 1.09000 * 109.46882 * 270.32341 * 1 2 3 28 28 H 1.08997 * 109.47226 * 30.31931 * 1 2 3 29 29 H 1.08998 * 109.47404 * 150.32553 * 1 2 3 30 30 H 1.08001 * 126.06643 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99153 * 179.71638 * 5 4 3 32 32 H 0.97007 * 119.99886 * 0.02562 * 8 6 5 33 33 H 1.08992 * 109.47205 * 59.99515 * 9 8 6 34 34 H 1.09000 * 109.46844 * 299.99474 * 9 8 6 35 35 H 1.08004 * 118.74794 * 0.41194 * 11 10 9 36 36 H 1.08997 * 109.45433 * 223.33711 * 12 11 10 37 37 H 1.09003 * 109.42661 * 103.40157 * 12 11 10 38 38 H 1.09002 * 109.68336 * 167.56430 * 13 12 11 39 39 H 1.08999 * 109.68109 * 288.08078 * 13 12 11 40 40 H 1.09004 * 109.32593 * 289.92600 * 15 14 13 41 41 H 1.08996 * 109.25753 * 170.27764 * 15 14 13 42 42 H 1.08996 * 109.47254 * 30.00159 * 18 17 2 43 43 H 1.09000 * 109.46539 * 150.00506 * 18 17 2 44 44 H 0.97001 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6371 0.6545 -0.0036 5 7 4.7738 1.4751 -0.0083 6 6 4.6370 2.8159 -0.0153 7 8 3.5277 3.3138 -0.0180 8 7 5.7298 3.6048 -0.0192 9 6 5.5811 5.0621 -0.0274 10 6 6.9436 5.7061 -0.0298 11 6 7.4640 6.0553 -1.1686 12 6 8.8203 6.6962 -1.2748 13 6 9.2484 7.2230 0.0978 14 8 9.0264 6.1917 1.0678 15 6 7.6409 5.9167 1.2840 16 7 3.6337 -0.6576 0.0037 17 7 2.3017 -1.0909 0.0061 18 6 1.8501 -2.4846 0.0144 19 6 1.6957 -2.9541 1.4380 20 1 1.9127 -2.2818 2.2549 21 6 1.2784 -4.2424 1.6977 22 7 1.0146 -5.0611 0.7029 23 14 1.0864 -4.8242 3.4623 24 1 0.0850 -3.9759 4.1571 25 1 0.6299 -6.2373 3.4707 26 1 2.3923 -4.7222 4.1620 27 1 -0.3633 0.0058 1.0277 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3634 -0.8929 -0.5087 30 1 1.9721 2.1211 -0.0004 31 1 5.6587 1.0778 -0.0064 32 1 6.6148 3.2075 -0.0174 33 1 5.0327 5.3764 0.8605 34 1 5.0335 5.3665 -0.9194 35 1 6.9007 5.8788 -2.0730 36 1 8.7765 7.5232 -1.9835 37 1 9.5437 5.9585 -1.6222 38 1 10.3061 7.4856 0.0767 39 1 8.6570 8.1018 0.3544 40 1 7.1833 6.7577 1.8052 41 1 7.5435 5.0180 1.8930 42 1 0.8913 -2.5589 -0.4987 43 1 2.5846 -3.1075 -0.4960 44 1 0.7214 -5.9675 0.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287068946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:18 Heat of formation + Delta-G solvation = -3.014603 kcal Electronic energy + Delta-G solvation = -25808.883583 eV Core-core repulsion = 21955.555407 eV Total energy + Delta-G solvation = -3853.328176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30850 -41.07566 -40.27859 -36.90509 -36.16094 -35.30974 -34.38361 -33.05113 -32.63327 -32.06435 -28.67486 -27.87781 -27.29987 -26.38649 -25.00092 -23.84850 -22.74455 -21.40838 -21.11468 -19.52312 -18.83220 -18.72149 -17.85368 -17.35857 -17.24964 -17.03195 -16.76285 -16.40164 -16.04602 -15.84871 -15.67458 -15.07928 -14.94972 -14.64121 -14.32795 -14.12096 -13.97902 -13.78953 -13.68645 -13.52252 -13.38858 -13.22587 -13.11541 -12.84728 -12.65208 -12.30424 -12.23501 -12.10451 -11.59680 -11.52365 -11.36037 -11.18848 -10.72463 -10.58591 -10.24123 -10.00678 -9.55652 -9.07166 -8.31553 -6.49301 0.74106 1.03672 1.32542 1.38871 1.40421 1.49623 1.66596 2.15327 2.36357 2.38987 2.94227 2.97755 3.19157 3.57884 3.70794 3.87124 4.02777 4.17933 4.24517 4.35471 4.44567 4.46153 4.52268 4.64339 4.66743 4.73178 4.80581 4.81472 4.90624 4.97730 4.98719 5.02206 5.04562 5.13593 5.21309 5.39674 5.45130 5.54626 5.75207 5.82180 5.86137 5.97900 6.16284 6.28163 6.62160 6.73717 7.12779 7.21336 7.40569 8.73916 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.002118 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.021156 B =13217.622981 C =13718.521337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.600 6.600 8 N -0.719 5.719 9 C 0.182 3.818 10 C -0.189 4.189 11 C -0.110 4.110 12 C -0.129 4.129 13 C 0.048 3.952 14 O -0.398 6.398 15 C 0.096 3.904 16 N -0.361 5.361 17 N -0.343 5.343 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.022 3.978 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.276 1.276 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.167 0.833 31 H 0.421 0.579 32 H 0.412 0.588 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.024 0.976 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 25.121 -3.243 28.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.329 4.329 4 C 0.037 3.963 5 N -0.288 5.288 6 C 0.411 3.589 7 O -0.478 6.478 8 N -0.376 5.376 9 C 0.059 3.941 10 C -0.190 4.190 11 C -0.129 4.129 12 C -0.165 4.165 13 C -0.028 4.028 14 O -0.317 6.317 15 C 0.020 3.980 16 N -0.191 5.191 17 N -0.126 5.126 18 C 0.157 3.843 19 C -0.591 4.591 20 H 0.067 0.933 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.201 1.201 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.184 0.816 31 H 0.258 0.742 32 H 0.248 0.752 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.293 24.170 -3.200 27.769 hybrid contribution 0.064 -0.411 0.517 0.664 sum 13.357 23.759 -2.682 27.388 Atomic orbital electron populations 1.20464 0.85353 1.04190 1.03931 1.21744 0.96650 0.86451 0.99499 1.21403 0.89929 0.99878 1.21669 1.18948 0.88069 0.88895 1.00387 1.41388 1.07077 1.03833 1.76487 1.15779 0.85240 0.80061 0.77782 1.90845 1.25187 1.73908 1.57841 1.44981 1.07113 1.06342 1.79165 1.20110 0.94327 0.76744 1.02946 1.21516 0.96810 1.03816 0.96863 1.22531 0.96870 0.96043 0.97457 1.21235 0.94366 1.01940 0.98995 1.22885 1.03039 0.89733 0.87148 1.88135 1.24250 1.57863 1.61464 1.21394 0.80967 1.02125 0.93550 1.77171 1.00072 1.09760 1.32136 1.48761 1.01659 1.07484 1.54683 1.19240 0.94915 0.72429 0.97759 1.21407 1.47555 0.98366 0.91774 0.93261 1.25737 0.93981 0.95897 1.02279 1.69994 1.45049 1.07376 1.33169 0.85414 0.78726 0.77669 0.78723 1.19004 1.19742 1.20123 0.89846 0.87586 0.91262 0.81604 0.74204 0.75164 0.91055 0.90995 0.86130 0.87672 0.89254 0.87075 0.91933 0.90864 0.87928 0.92968 0.95791 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.77 10.11 71.24 0.72 -2.05 16 2 C 0.09 3.74 6.93 41.39 0.29 4.03 16 3 C -0.30 -12.49 9.52 22.11 0.21 -12.28 16 4 C 0.29 12.15 8.11 133.31 1.08 13.23 16 5 N -0.64 -19.76 5.45 -321.23 -1.75 -21.51 16 6 C 0.71 20.49 8.53 179.06 1.53 22.02 16 7 O -0.60 -21.55 13.47 -4.01 -0.05 -21.60 16 8 N -0.72 -13.52 5.55 -482.31 -2.68 -16.20 16 9 C 0.18 2.95 5.73 85.63 0.49 3.44 16 10 C -0.19 -2.35 5.29 -15.58 -0.08 -2.43 16 11 C -0.11 -1.17 9.53 26.60 0.25 -0.92 16 12 C -0.13 -0.99 6.36 29.79 0.19 -0.80 16 13 C 0.05 0.44 6.89 72.02 0.50 0.94 16 14 O -0.40 -6.02 10.85 -148.98 -1.62 -7.64 16 15 C 0.10 1.23 6.76 71.09 0.48 1.71 16 16 N -0.36 -17.24 12.59 -54.43 -0.69 -17.93 16 17 N -0.34 -16.91 3.59 -338.43 -1.22 -18.13 16 18 C 0.28 14.75 5.99 85.63 0.51 15.26 16 19 C -0.55 -31.30 9.39 25.60 0.24 -31.06 16 20 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 21 C 0.02 1.22 5.46 84.66 0.46 1.68 16 22 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 23 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.07 2.40 7.07 -2.39 -0.02 2.38 16 30 H 0.17 6.76 5.91 -2.91 -0.02 6.75 16 31 H 0.42 10.35 8.84 -92.71 -0.82 9.53 16 32 H 0.41 5.69 8.48 -92.70 -0.79 4.90 16 33 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.07 1.25 7.86 -2.39 -0.02 1.23 16 35 H 0.12 1.19 7.83 -2.91 -0.02 1.17 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.48 8.10 -2.39 -0.02 0.46 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 43 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.79 370.76 0.61 -72.17 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.56 Total: 24.55 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 6.87 Total: 12.76 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -6.05 Total: -125.64 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.67 Total: -29.24 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.79 0.61 -72.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287068946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.160 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds