Wall clock time and date at job start Tue Mar 31 2020 12:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.85204 * 2 1 4 4 C 1.53780 * 113.61314 * 228.69306 * 2 1 3 5 5 C 1.53784 * 87.08436 * 220.01824 * 4 2 1 6 6 C 1.53784 * 113.61539 * 131.19755 * 2 1 3 7 7 H 1.09005 * 113.60960 * 25.34946 * 6 2 1 8 8 N 1.46495 * 113.61343 * 254.53182 * 6 2 1 9 9 C 1.34780 * 119.99774 * 155.00135 * 8 6 2 10 10 O 1.21358 * 120.00277 * 359.97438 * 9 8 6 11 11 C 1.49344 * 119.99736 * 179.97438 * 9 8 6 12 12 O 1.21389 * 120.00137 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00049 * 179.97438 * 11 9 8 14 14 C 1.39935 * 120.00319 * 180.02562 * 13 11 9 15 15 C 1.40467 * 125.97710 * 359.97438 * 14 13 11 16 16 C 1.35215 * 107.86355 * 179.97438 * 15 14 13 17 17 N 1.34982 * 107.87843 * 0.02562 * 16 15 14 18 18 C 1.46501 * 125.97281 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47368 * 124.99628 * 18 17 16 20 20 H 1.08002 * 119.99899 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00140 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00153 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47345 * 89.99601 * 23 21 19 25 25 H 1.48498 * 109.47070 * 209.99799 * 23 21 19 26 26 H 1.48501 * 109.47185 * 329.99490 * 23 21 19 27 27 N 1.31267 * 125.97983 * 179.97438 * 14 13 11 28 28 H 1.08994 * 109.47131 * 288.79924 * 1 2 3 29 29 H 1.08998 * 109.47211 * 48.80093 * 1 2 3 30 30 H 1.09002 * 109.47184 * 168.79975 * 1 2 3 31 31 H 1.08998 * 109.47437 * 191.19594 * 3 2 1 32 32 H 1.09000 * 109.47195 * 311.19955 * 3 2 1 33 33 H 1.09002 * 109.46666 * 71.19615 * 3 2 1 34 34 H 1.09001 * 113.61802 * 334.57025 * 4 2 1 35 35 H 1.09008 * 113.61562 * 105.47211 * 4 2 1 36 36 H 1.08994 * 113.61485 * 270.88647 * 5 4 2 37 37 H 1.08995 * 113.61449 * 139.97705 * 5 4 2 38 38 H 0.96994 * 120.00077 * 334.99614 * 8 6 2 39 39 H 0.97004 * 119.99965 * 359.97438 * 13 11 9 40 40 H 1.07998 * 126.06528 * 0.26752 * 15 14 13 41 41 H 1.07995 * 126.05677 * 180.02562 * 16 15 14 42 42 H 1.08996 * 109.46600 * 244.99804 * 18 17 16 43 43 H 1.08997 * 109.46891 * 4.99301 * 18 17 16 44 44 H 0.97002 * 120.00033 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0584 5 6 3.1924 -1.3137 0.0012 6 6 2.1460 -0.9281 1.0602 7 1 1.4939 -1.7515 1.3516 8 7 2.7091 -0.2144 2.2090 9 6 2.8173 -0.8346 3.4007 10 8 2.4478 -1.9842 3.5222 11 6 3.3918 -0.1072 4.5716 12 8 3.7619 1.0425 4.4499 13 7 3.4996 -0.7272 5.7634 14 6 4.0374 -0.0454 6.8607 15 6 4.5024 1.2800 6.8617 16 6 4.9412 1.5648 8.1085 17 7 4.7637 0.4655 8.8714 18 6 5.1056 0.3383 10.2903 19 6 3.8887 -0.1012 11.0628 20 1 2.9539 -0.2685 10.5484 21 6 3.9683 -0.2885 12.4265 22 7 5.1064 -0.0842 13.0530 23 14 2.4600 -0.8339 13.3840 24 1 2.4145 -2.3174 13.4331 25 1 2.5293 -0.2949 14.7660 26 1 1.2370 -0.3230 12.7143 27 7 4.1957 -0.5327 8.0693 28 1 -0.3633 0.3311 0.9728 29 1 -0.3633 0.6769 -0.7732 30 1 -0.3634 -1.0081 -0.1996 31 1 3.1942 1.3533 -0.1995 32 1 1.6415 2.0076 -0.7732 33 1 1.9600 1.8733 0.9729 34 1 1.4945 -1.7548 -1.3473 35 1 2.5650 -0.4007 -1.9142 36 1 4.0710 -0.6688 0.0006 37 1 3.4443 -2.3741 0.0022 38 1 3.0042 0.7045 2.1119 39 1 3.2035 -1.6458 5.8607 40 1 4.5044 1.9537 6.0176 41 1 5.3595 2.5051 8.4359 42 1 5.8975 -0.4013 10.4082 43 1 5.4483 1.3011 10.6691 44 1 5.1624 -0.2156 14.0124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288323140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:11 Heat of formation + Delta-G solvation = 30.581425 kcal Electronic energy + Delta-G solvation = -26054.621136 eV Core-core repulsion = 22202.749793 eV Total energy + Delta-G solvation = -3851.871343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27619 -40.62734 -39.66421 -38.22242 -35.19214 -33.80314 -33.32319 -31.10584 -31.03424 -29.42343 -27.96104 -27.29168 -26.27742 -24.24726 -22.97109 -22.69751 -21.26937 -20.42385 -19.84283 -19.10612 -17.95175 -17.14397 -16.62143 -16.48482 -16.17016 -15.98901 -15.36208 -15.23676 -14.72856 -14.50077 -14.35054 -14.08862 -13.72001 -13.58837 -13.23356 -12.96417 -12.73052 -12.61365 -12.41980 -12.30969 -12.18458 -11.92069 -11.89205 -11.56289 -11.25686 -11.05757 -10.88579 -10.73675 -10.72326 -10.54423 -10.27923 -10.03731 -9.57196 -9.53957 -9.41024 -8.65293 -8.23847 -7.58883 -6.26408 -4.31538 1.18844 2.06669 2.65130 3.01715 3.20047 3.23714 3.29526 3.35132 3.65314 3.84987 3.88169 4.08579 4.29474 4.30398 4.38624 4.41062 4.72412 5.03946 5.08977 5.11269 5.15743 5.27065 5.34556 5.41674 5.42032 5.50672 5.53943 5.60276 5.70183 5.70833 5.85903 5.89944 6.08488 6.10196 6.31825 6.40586 6.78616 6.91684 7.01617 7.23666 7.36145 7.62302 7.68680 7.84336 7.94700 7.97047 8.53343 8.77037 9.34328 10.82405 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.002192 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.733151 B =12772.022799 C =13170.210888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.152 4.152 6 C 0.126 3.874 7 H 0.120 0.880 8 N -0.690 5.690 9 C 0.517 3.483 10 O -0.516 6.516 11 C 0.511 3.489 12 O -0.501 6.501 13 N -0.598 5.598 14 C 0.250 3.750 15 C -0.286 4.286 16 C 0.053 3.947 17 N -0.314 5.314 18 C 0.257 3.743 19 C -0.530 4.530 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.272 1.272 27 N -0.294 5.294 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.423 0.577 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 2.093 -27.659 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.094 4.094 3 C -0.195 4.195 4 C -0.168 4.168 5 C -0.191 4.191 6 C 0.022 3.978 7 H 0.138 0.862 8 N -0.344 5.344 9 C 0.297 3.703 10 O -0.391 6.391 11 C 0.291 3.709 12 O -0.374 6.374 13 N -0.246 5.246 14 C -0.003 4.003 15 C -0.317 4.317 16 C -0.097 4.097 17 N -0.096 5.096 18 C 0.140 3.860 19 C -0.568 4.568 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.126 5.126 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.252 0.748 39 H 0.261 0.739 40 H 0.178 0.822 41 H 0.188 0.812 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.869 1.056 -26.584 27.047 hybrid contribution -0.601 0.352 0.254 0.742 sum -5.470 1.408 -26.330 26.929 Atomic orbital electron populations 1.21765 0.93432 1.02144 1.02238 1.22284 0.96064 0.95431 0.95576 1.21640 1.00988 0.94264 1.02623 1.22911 0.98112 0.99171 0.96579 1.23404 0.97771 1.02477 0.95459 1.22877 0.96112 0.95898 0.82933 0.86224 1.45777 1.62216 1.17790 1.08588 1.19952 0.79552 0.86659 0.84144 1.90783 1.47389 1.16757 1.84142 1.19963 0.80513 0.86802 0.83600 1.90704 1.46668 1.16518 1.83498 1.42006 1.58982 1.17136 1.06499 1.19021 1.01238 0.92474 0.87526 1.21512 1.14918 0.96296 0.98960 1.22579 1.01988 0.93733 0.91366 1.49173 1.43030 1.06772 1.10673 1.19797 0.97759 0.99472 0.68991 1.21245 0.96208 1.47090 0.92274 0.91259 1.24946 0.96844 0.94915 0.97362 1.69915 1.24912 1.48477 1.09984 0.86312 0.82353 0.79031 0.78724 1.20284 1.20974 1.19706 1.77410 1.21250 1.14272 0.99628 0.92230 0.92171 0.92204 0.91869 0.91534 0.91767 0.89580 0.90584 0.89443 0.90615 0.74786 0.73947 0.82168 0.81229 0.93553 0.92365 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.09 -0.54 1.37 -153.70 -0.21 -0.75 16 3 C -0.14 -0.73 8.05 37.16 0.30 -0.43 16 4 C -0.13 -0.66 7.20 -25.92 -0.19 -0.85 16 5 C -0.15 -0.99 7.53 -25.92 -0.20 -1.19 16 6 C 0.13 0.99 3.69 -67.12 -0.25 0.74 16 7 H 0.12 1.07 7.42 -51.93 -0.39 0.69 16 8 N -0.69 -6.52 5.22 -53.48 -0.28 -6.80 16 9 C 0.52 6.49 7.89 -11.63 -0.09 6.40 16 10 O -0.52 -7.46 16.08 5.49 0.09 -7.37 16 11 C 0.51 7.52 7.85 -11.64 -0.09 7.43 16 12 O -0.50 -7.87 13.60 5.46 0.07 -7.79 16 13 N -0.60 -9.85 5.43 -11.58 -0.06 -9.91 16 14 C 0.25 5.01 8.10 -154.55 -1.25 3.76 16 15 C -0.29 -5.44 9.60 -39.82 -0.38 -5.83 16 16 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 17 N -0.31 -7.20 3.67 -62.57 -0.23 -7.43 16 18 C 0.26 6.45 6.26 -5.20 -0.03 6.42 16 19 C -0.53 -14.66 9.24 -34.44 -0.32 -14.98 16 20 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 23 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 7.94 -51.93 -0.41 -0.09 16 31 H 0.06 0.31 7.35 -51.93 -0.38 -0.07 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.37 7.10 -51.93 -0.37 0.00 16 34 H 0.09 0.39 7.96 -51.93 -0.41 -0.02 16 35 H 0.08 0.34 8.10 -51.92 -0.42 -0.08 16 36 H 0.09 0.55 7.66 -51.93 -0.40 0.15 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.41 3.49 6.13 -40.82 -0.25 3.24 16 39 H 0.42 6.42 8.29 -40.82 -0.34 6.08 16 40 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 41 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 42 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -31.51 370.25 -7.56 -39.07 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.18 Total: 6.41 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.66 Total: 2.72 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.56 Total: -54.97 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.16 Total: -15.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -7.56 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288323140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.655 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds