Wall clock time and date at job start Tue Mar 31 2020 12:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.85204 * 2 1 4 4 C 1.53780 * 113.61314 * 228.69306 * 2 1 3 5 5 C 1.53784 * 87.08436 * 220.01824 * 4 2 1 6 6 C 1.53784 * 113.61539 * 131.19755 * 2 1 3 7 7 H 1.09005 * 113.60960 * 25.34946 * 6 2 1 8 8 N 1.46495 * 113.61343 * 254.53182 * 6 2 1 9 9 C 1.34780 * 119.99774 * 155.00135 * 8 6 2 10 10 O 1.21358 * 120.00277 * 359.97438 * 9 8 6 11 11 C 1.49344 * 119.99736 * 179.97438 * 9 8 6 12 12 O 1.21389 * 120.00137 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00049 * 179.97438 * 11 9 8 14 14 C 1.39935 * 120.00319 * 180.02562 * 13 11 9 15 15 C 1.40467 * 125.97710 * 359.97438 * 14 13 11 16 16 C 1.35215 * 107.86355 * 179.97438 * 15 14 13 17 17 N 1.34982 * 107.87843 * 0.02562 * 16 15 14 18 18 C 1.46501 * 125.97281 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47368 * 124.99628 * 18 17 16 20 20 H 1.08002 * 119.99899 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00140 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00153 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47345 * 89.99601 * 23 21 19 25 25 H 1.48498 * 109.47070 * 209.99799 * 23 21 19 26 26 H 1.48501 * 109.47185 * 329.99490 * 23 21 19 27 27 N 1.31267 * 125.97983 * 179.97438 * 14 13 11 28 28 H 1.08994 * 109.47131 * 288.79924 * 1 2 3 29 29 H 1.08998 * 109.47211 * 48.80093 * 1 2 3 30 30 H 1.09002 * 109.47184 * 168.79975 * 1 2 3 31 31 H 1.08998 * 109.47437 * 191.19594 * 3 2 1 32 32 H 1.09000 * 109.47195 * 311.19955 * 3 2 1 33 33 H 1.09002 * 109.46666 * 71.19615 * 3 2 1 34 34 H 1.09001 * 113.61802 * 334.57025 * 4 2 1 35 35 H 1.09008 * 113.61562 * 105.47211 * 4 2 1 36 36 H 1.08994 * 113.61485 * 270.88647 * 5 4 2 37 37 H 1.08995 * 113.61449 * 139.97705 * 5 4 2 38 38 H 0.96994 * 120.00077 * 334.99614 * 8 6 2 39 39 H 0.97004 * 119.99965 * 359.97438 * 13 11 9 40 40 H 1.07998 * 126.06528 * 0.26752 * 15 14 13 41 41 H 1.07995 * 126.05677 * 180.02562 * 16 15 14 42 42 H 1.08996 * 109.46600 * 244.99804 * 18 17 16 43 43 H 1.08997 * 109.46891 * 4.99301 * 18 17 16 44 44 H 0.97002 * 120.00033 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0584 5 6 3.1924 -1.3137 0.0012 6 6 2.1460 -0.9281 1.0602 7 1 1.4939 -1.7515 1.3516 8 7 2.7091 -0.2144 2.2090 9 6 2.8173 -0.8346 3.4007 10 8 2.4478 -1.9842 3.5222 11 6 3.3918 -0.1072 4.5716 12 8 3.7619 1.0425 4.4499 13 7 3.4996 -0.7272 5.7634 14 6 4.0374 -0.0454 6.8607 15 6 4.5024 1.2800 6.8617 16 6 4.9412 1.5648 8.1085 17 7 4.7637 0.4655 8.8714 18 6 5.1056 0.3383 10.2903 19 6 3.8887 -0.1012 11.0628 20 1 2.9539 -0.2685 10.5484 21 6 3.9683 -0.2885 12.4265 22 7 5.1064 -0.0842 13.0530 23 14 2.4600 -0.8339 13.3840 24 1 2.4145 -2.3174 13.4331 25 1 2.5293 -0.2949 14.7660 26 1 1.2370 -0.3230 12.7143 27 7 4.1957 -0.5327 8.0693 28 1 -0.3633 0.3311 0.9728 29 1 -0.3633 0.6769 -0.7732 30 1 -0.3634 -1.0081 -0.1996 31 1 3.1942 1.3533 -0.1995 32 1 1.6415 2.0076 -0.7732 33 1 1.9600 1.8733 0.9729 34 1 1.4945 -1.7548 -1.3473 35 1 2.5650 -0.4007 -1.9142 36 1 4.0710 -0.6688 0.0006 37 1 3.4443 -2.3741 0.0022 38 1 3.0042 0.7045 2.1119 39 1 3.2035 -1.6458 5.8607 40 1 4.5044 1.9537 6.0176 41 1 5.3595 2.5051 8.4359 42 1 5.8975 -0.4013 10.4082 43 1 5.4483 1.3011 10.6691 44 1 5.1624 -0.2156 14.0124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288323140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:11 Heat of formation + Delta-G solvation = 10.271406 kcal Electronic energy + Delta-G solvation = -26055.501845 eV Core-core repulsion = 22202.749793 eV Total energy + Delta-G solvation = -3852.752051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49052 -41.78118 -40.68061 -39.30675 -36.57278 -35.39487 -34.62306 -32.84420 -31.57025 -31.03048 -28.91892 -28.39274 -27.48254 -25.44415 -24.39400 -23.40611 -22.59805 -21.80852 -21.11276 -20.08815 -18.86380 -18.69353 -18.23455 -17.85754 -17.23002 -17.01863 -16.89956 -16.22746 -15.94892 -15.75633 -15.55399 -15.24901 -14.78674 -14.60387 -14.24886 -14.10612 -13.88858 -13.84827 -13.72415 -13.16323 -13.13913 -12.99371 -12.80687 -12.76717 -12.59646 -12.35350 -12.31953 -12.14684 -11.76855 -11.64336 -11.44179 -11.26051 -11.23565 -10.76665 -10.72703 -10.18158 -9.84539 -9.22758 -8.34528 -6.47930 0.02552 0.86227 1.12806 1.37418 1.38884 1.49665 1.72789 1.84831 2.24295 2.33560 2.60010 2.97829 3.23341 3.36043 3.58705 3.80892 3.88392 3.90471 4.21443 4.27133 4.51249 4.61964 4.62770 4.66555 4.78876 4.83115 4.87652 4.93062 4.93875 4.99673 5.00145 5.02524 5.05953 5.16692 5.21050 5.29845 5.42325 5.55129 5.55620 5.74587 5.77353 5.86423 6.16082 6.24806 6.55049 6.63283 6.77887 6.95495 7.21908 8.73351 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.002192 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.733151 B =12772.022799 C =13170.210888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.151 4.151 6 C 0.112 3.888 7 H 0.108 0.892 8 N -0.671 5.671 9 C 0.523 3.477 10 O -0.538 6.538 11 C 0.516 3.484 12 O -0.507 6.507 13 N -0.601 5.601 14 C 0.257 3.743 15 C -0.287 4.287 16 C 0.061 3.939 17 N -0.340 5.340 18 C 0.271 3.729 19 C -0.548 4.548 20 H 0.051 0.949 21 C 0.019 3.981 22 N -0.919 5.919 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.273 1.273 27 N -0.341 5.341 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.420 0.580 39 H 0.428 0.572 40 H 0.177 0.823 41 H 0.208 0.792 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 2.963 -29.516 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.197 4.197 4 C -0.157 4.157 5 C -0.189 4.189 6 C 0.008 3.992 7 H 0.126 0.874 8 N -0.324 5.324 9 C 0.303 3.697 10 O -0.415 6.415 11 C 0.297 3.703 12 O -0.380 6.380 13 N -0.250 5.250 14 C 0.003 3.997 15 C -0.318 4.318 16 C -0.088 4.088 17 N -0.122 5.122 18 C 0.153 3.847 19 C -0.587 4.587 20 H 0.069 0.931 21 C -0.181 4.181 22 N -0.557 5.557 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.198 1.198 27 N -0.173 5.173 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.260 0.740 39 H 0.266 0.734 40 H 0.194 0.806 41 H 0.224 0.776 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.562 1.951 -28.500 29.103 hybrid contribution -0.384 0.124 0.661 0.774 sum -5.946 2.075 -27.839 28.543 Atomic orbital electron populations 1.21778 0.93290 1.02606 1.01968 1.22288 0.96153 0.95616 0.94624 1.21674 1.01481 0.93823 1.02684 1.22891 0.97357 0.99110 0.96365 1.23411 0.97914 1.02386 0.95223 1.23171 0.97016 0.96381 0.82620 0.87448 1.45817 1.60759 1.17970 1.07894 1.19545 0.79706 0.86250 0.84246 1.90784 1.48783 1.17536 1.84364 1.20400 0.79689 0.86706 0.83532 1.90680 1.46782 1.16927 1.83637 1.42129 1.59214 1.17424 1.06237 1.19343 0.99802 0.93012 0.87512 1.21754 1.14674 0.96052 0.99337 1.23253 1.00598 0.93981 0.90938 1.48920 1.44975 1.08053 1.10233 1.19391 0.96171 0.98744 0.70437 1.21390 0.96403 1.47859 0.93008 0.93051 1.25715 0.99617 0.94707 0.98101 1.69984 1.26437 1.48821 1.10501 0.85367 0.78804 0.78606 0.77758 1.19960 1.19561 1.19796 1.77323 1.23416 1.15533 1.00989 0.93401 0.91037 0.91933 0.91285 0.90406 0.92431 0.88923 0.89210 0.88985 0.91004 0.74002 0.73428 0.80616 0.77564 0.95929 0.91865 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.09 -0.83 1.37 -51.66 -0.07 -0.91 16 3 C -0.14 -1.16 8.05 71.98 0.58 -0.58 16 4 C -0.12 -0.92 7.20 31.12 0.22 -0.70 16 5 C -0.15 -1.69 7.53 31.12 0.23 -1.46 16 6 C 0.11 1.61 3.69 45.52 0.17 1.78 16 7 H 0.11 1.86 7.42 -2.38 -0.02 1.85 16 8 N -0.67 -11.89 5.22 -441.47 -2.30 -14.19 16 9 C 0.52 12.79 7.89 87.24 0.69 13.48 16 10 O -0.54 -15.45 16.08 -3.27 -0.05 -15.50 16 11 C 0.52 14.79 7.85 87.24 0.69 15.48 16 12 O -0.51 -15.24 13.60 -3.37 -0.05 -15.28 16 13 N -0.60 -19.76 5.43 -308.89 -1.68 -21.44 16 14 C 0.26 10.31 8.10 133.40 1.08 11.39 16 15 C -0.29 -10.65 9.60 22.12 0.21 -10.44 16 16 C 0.06 2.29 11.43 83.51 0.95 3.25 16 17 N -0.34 -15.76 3.67 -351.87 -1.29 -17.05 16 18 C 0.27 13.93 6.26 85.63 0.54 14.47 16 19 C -0.55 -30.95 9.24 25.60 0.24 -30.71 16 20 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 21 C 0.02 1.06 5.46 84.66 0.46 1.52 16 22 N -0.92 -51.89 13.29 21.45 0.28 -51.61 16 23 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 N -0.34 -16.06 12.42 -54.53 -0.68 -16.73 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.57 7.94 -2.39 -0.02 0.55 16 31 H 0.07 0.50 7.35 -2.39 -0.02 0.48 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.56 7.10 -2.39 -0.02 0.54 16 34 H 0.09 0.62 7.96 -2.39 -0.02 0.60 16 35 H 0.09 0.50 8.10 -2.38 -0.02 0.48 16 36 H 0.09 0.96 7.66 -2.39 -0.02 0.94 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.42 6.41 6.13 -92.71 -0.57 5.85 16 39 H 0.43 13.17 8.29 -92.71 -0.77 12.40 16 40 H 0.18 5.93 5.91 -2.91 -0.02 5.92 16 41 H 0.21 5.92 8.06 -2.91 -0.02 5.90 16 42 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 44 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -67.65 370.25 2.62 -65.03 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.29 Total: 24.98 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 6.65 Total: 15.89 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.66 Total: -121.02 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.10 Total: -30.78 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.65 2.62 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288323140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.304 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds