Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34658 * 116.99798 * 2 1 4 4 O 1.21505 * 120.00005 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.39954 * 119.99961 * 184.61998 * 5 3 2 7 7 C 1.38861 * 120.06968 * 144.90704 * 6 5 3 8 8 C 1.38122 * 119.92666 * 180.27430 * 7 6 5 9 9 C 1.38275 * 120.07058 * 359.49882 * 8 7 6 10 10 C 1.50700 * 119.92941 * 180.27615 * 9 8 7 11 11 C 1.52998 * 109.47065 * 270.22565 * 10 9 8 12 12 N 1.46496 * 109.47229 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00048 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00076 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47274 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.46898 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00139 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00549 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99557 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47479 * 90.00478 * 21 19 17 23 23 H 1.48504 * 109.47154 * 210.00113 * 21 19 17 24 24 H 1.48505 * 109.47458 * 329.99894 * 21 19 17 25 25 C 1.38279 * 120.13876 * 0.50095 * 9 8 7 26 26 C 1.38110 * 120.07361 * 359.75547 * 25 9 8 27 27 H 1.09003 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46814 * 299.99843 * 1 2 3 29 29 H 1.09000 * 109.46773 * 60.00081 * 1 2 3 30 30 H 0.97001 * 120.00360 * 4.61615 * 5 3 2 31 31 H 1.07993 * 120.03707 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.96032 * 179.74305 * 8 7 6 33 33 H 1.08992 * 109.47177 * 30.22914 * 10 9 8 34 34 H 1.09007 * 109.46868 * 150.22921 * 10 9 8 35 35 H 1.09004 * 109.47107 * 300.00002 * 11 10 9 36 36 H 1.08997 * 109.47100 * 59.99875 * 11 10 9 37 37 H 0.97000 * 120.00178 * 359.97438 * 12 11 10 38 38 H 1.09009 * 109.46892 * 300.00502 * 15 13 12 39 39 H 1.08997 * 109.47072 * 59.99791 * 15 13 12 40 40 H 1.08997 * 109.47205 * 299.99520 * 16 15 13 41 41 H 1.08998 * 109.47615 * 60.00288 * 16 15 13 42 42 H 0.96993 * 120.00143 * 180.02562 * 20 19 17 43 43 H 1.08008 * 119.96816 * 179.76985 * 25 9 8 44 44 H 1.07997 * 120.04347 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2704 -0.0005 6 6 4.0448 2.5134 0.0971 7 6 5.2400 2.6309 0.7942 8 6 5.8618 3.8602 0.8935 9 6 5.3008 4.9712 0.2909 10 6 5.9852 6.3097 0.3960 11 6 5.4835 7.0426 1.6418 12 7 6.1483 8.3440 1.7436 13 6 5.8612 9.1689 2.7701 14 8 5.0521 8.8340 3.6092 15 6 6.5455 10.5074 2.8752 16 6 6.0446 11.2398 4.1216 17 6 6.7285 12.5787 4.2263 18 1 7.4487 12.8771 3.4790 19 6 6.4356 13.4222 5.2769 20 7 7.0327 14.5903 5.3687 21 14 5.1903 12.9057 6.5700 22 1 5.8855 12.1856 7.6670 23 1 4.5168 14.1105 7.1178 24 1 4.1786 12.0104 5.9534 25 6 4.1108 4.8574 -0.4040 26 6 3.4812 3.6321 -0.5025 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9374 0.4596 -0.0685 31 1 5.6808 1.7629 1.2616 32 1 6.7893 3.9530 1.4391 33 1 7.0625 6.1620 0.4705 34 1 5.7603 6.9033 -0.4901 35 1 4.4061 7.1903 1.5672 36 1 5.7083 6.4490 2.5278 37 1 6.7957 8.6118 1.0727 38 1 7.6230 10.3598 2.9494 39 1 6.3204 11.1012 1.9894 40 1 4.9672 11.3875 4.0478 41 1 6.2702 10.6460 5.0073 42 1 6.8268 15.1835 6.1079 43 1 3.6731 5.7277 -0.8705 44 1 2.5516 3.5439 -1.0450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291688673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = -100.930153 kcal Electronic energy + Delta-G solvation = -24928.848666 eV Core-core repulsion = 21038.981802 eV Total energy + Delta-G solvation = -3889.866864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36317 -39.77821 -39.13793 -37.31146 -35.90161 -34.78622 -33.44012 -32.10120 -31.29021 -31.15599 -28.78772 -27.61098 -25.96870 -23.87091 -23.31391 -22.21717 -21.13796 -21.10759 -19.60196 -19.43597 -18.12714 -17.20881 -17.11879 -16.78378 -16.11328 -15.84064 -15.78736 -15.29285 -15.12346 -14.62197 -14.17608 -14.14580 -14.02984 -14.00479 -13.56810 -13.37106 -13.00599 -12.62362 -12.55033 -12.48943 -12.16027 -12.00546 -11.69930 -11.38254 -11.33880 -11.30312 -10.98857 -10.92230 -10.58813 -10.12992 -10.01267 -9.75475 -9.25667 -9.21770 -9.13791 -8.83411 -8.48070 -8.47990 -6.00629 -3.99172 0.83265 1.08737 1.57657 2.25232 3.17631 3.35144 3.40323 3.46766 3.55248 3.58520 3.64473 4.46947 4.53604 4.59864 4.62153 4.69362 4.71529 4.84530 4.89837 4.95543 5.06914 5.12177 5.26110 5.35028 5.38871 5.49724 5.59750 5.72414 5.79980 5.88059 5.93943 5.97451 6.11118 6.12719 6.13730 6.33872 6.63368 6.67082 6.73857 6.76263 7.40166 7.47222 7.70794 7.79355 7.84092 8.52933 8.70546 9.02587 9.62677 11.12177 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.001782 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.196259 B =15705.702910 C =16464.071777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.646 3.354 4 O -0.550 6.550 5 N -0.650 5.650 6 C 0.147 3.853 7 C -0.137 4.137 8 C -0.094 4.094 9 C -0.088 4.088 10 C -0.091 4.091 11 C 0.124 3.876 12 N -0.744 5.744 13 C 0.509 3.491 14 O -0.541 6.541 15 C -0.122 4.122 16 C 0.001 3.999 17 C -0.525 4.525 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 C -0.094 4.094 26 C -0.116 4.116 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.417 0.583 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.399 0.601 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.129 0.871 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -32.932 -16.859 37.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.400 3.600 4 O -0.437 6.437 5 N -0.301 5.301 6 C 0.055 3.945 7 C -0.157 4.157 8 C -0.112 4.112 9 C -0.089 4.089 10 C -0.128 4.128 11 C 0.000 4.000 12 N -0.398 5.398 13 C 0.297 3.703 14 O -0.417 6.417 15 C -0.162 4.162 16 C -0.037 4.037 17 C -0.563 4.563 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 C -0.112 4.112 26 C -0.136 4.136 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.254 0.746 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.820 -32.603 -16.109 37.000 hybrid contribution -0.228 -0.518 0.392 0.688 sum -7.048 -33.121 -15.717 37.332 Atomic orbital electron populations 1.23290 0.73592 1.03857 1.03148 1.86242 1.24801 1.30508 1.86795 1.18115 0.83098 0.82536 0.76252 1.91039 1.64348 1.34528 1.53822 1.41901 1.03490 1.09267 1.75473 1.17476 0.93877 0.84142 0.99026 1.20833 0.96044 0.98732 1.00081 1.20869 1.00109 0.91339 0.98900 1.19745 0.95607 0.94966 0.98567 1.20786 1.00392 0.92913 0.98726 1.21228 0.97589 0.84096 0.97109 1.46173 1.46253 1.18331 1.29018 1.21540 0.82001 0.86829 0.79912 1.90660 1.34509 1.76166 1.40322 1.21665 1.00538 0.90920 1.03080 1.19371 0.97131 0.95228 0.91989 1.21125 1.24760 0.99590 1.10781 0.90930 1.24969 0.95847 0.94673 0.97745 1.69910 1.43124 1.09315 1.31940 0.86801 0.82565 0.78132 0.82089 1.20254 1.21460 1.18514 1.21007 0.94332 0.97255 0.98647 1.21285 1.00996 0.91724 0.99587 0.87610 0.91475 0.91529 0.74641 0.85407 0.85176 0.90110 0.90106 0.91656 0.91684 0.76751 0.89635 0.89597 0.95827 0.96283 0.92747 0.85314 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 10.56 101.05 1.07 1.34 16 2 O -0.37 -2.73 10.62 -40.37 -0.43 -3.16 16 3 C 0.65 6.04 8.59 54.05 0.46 6.51 16 4 O -0.55 -6.84 13.56 -19.27 -0.26 -7.10 16 5 N -0.65 -4.73 5.34 -14.27 -0.08 -4.81 16 6 C 0.15 1.30 6.30 -83.68 -0.53 0.77 16 7 C -0.14 -1.03 9.97 -39.39 -0.39 -1.42 16 8 C -0.09 -0.74 9.69 -39.61 -0.38 -1.13 16 9 C -0.09 -0.77 5.14 -104.59 -0.54 -1.30 16 10 C -0.09 -0.73 5.45 -27.88 -0.15 -0.88 16 11 C 0.12 1.46 5.66 -4.05 -0.02 1.44 16 12 N -0.74 -9.77 5.56 -60.30 -0.33 -10.11 16 13 C 0.51 9.40 7.83 -10.99 -0.09 9.32 16 14 O -0.54 -12.37 15.98 5.55 0.09 -12.28 16 15 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 16 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 17 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 21 Si 0.88 22.92 27.47 -169.99 -4.67 18.25 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 25 C -0.09 -0.87 9.69 -39.61 -0.38 -1.25 16 26 C -0.12 -1.16 8.70 -39.39 -0.34 -1.50 16 27 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.42 1.69 8.93 -40.82 -0.36 1.33 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 38 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 41 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.14 1.52 6.22 -52.49 -0.33 1.19 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -37.95 376.85 -7.66 -45.61 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.45 Total: -0.34 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.98 Total: -4.27 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.36 Total: -42.38 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.60 Total: -22.55 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.67 Total: 18.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.95 -7.66 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291688673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.318 kcal (2) G-P(sol) polarization free energy of solvation -37.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds