Wall clock time and date at job start Tue Mar 31 2020 12:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34658 * 116.99798 * 2 1 4 4 O 1.21505 * 120.00005 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.39954 * 119.99961 * 184.61998 * 5 3 2 7 7 C 1.38861 * 120.06968 * 144.90704 * 6 5 3 8 8 C 1.38122 * 119.92666 * 180.27430 * 7 6 5 9 9 C 1.38275 * 120.07058 * 359.49882 * 8 7 6 10 10 C 1.50700 * 119.92941 * 180.27615 * 9 8 7 11 11 C 1.52998 * 109.47065 * 270.22565 * 10 9 8 12 12 N 1.46496 * 109.47229 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00048 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00076 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47274 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.46898 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00139 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00549 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99557 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47479 * 90.00478 * 21 19 17 23 23 H 1.48504 * 109.47154 * 210.00113 * 21 19 17 24 24 H 1.48505 * 109.47458 * 329.99894 * 21 19 17 25 25 C 1.38279 * 120.13876 * 0.50095 * 9 8 7 26 26 C 1.38110 * 120.07361 * 359.75547 * 25 9 8 27 27 H 1.09003 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46814 * 299.99843 * 1 2 3 29 29 H 1.09000 * 109.46773 * 60.00081 * 1 2 3 30 30 H 0.97001 * 120.00360 * 4.61615 * 5 3 2 31 31 H 1.07993 * 120.03707 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.96032 * 179.74305 * 8 7 6 33 33 H 1.08992 * 109.47177 * 30.22914 * 10 9 8 34 34 H 1.09007 * 109.46868 * 150.22921 * 10 9 8 35 35 H 1.09004 * 109.47107 * 300.00002 * 11 10 9 36 36 H 1.08997 * 109.47100 * 59.99875 * 11 10 9 37 37 H 0.97000 * 120.00178 * 359.97438 * 12 11 10 38 38 H 1.09009 * 109.46892 * 300.00502 * 15 13 12 39 39 H 1.08997 * 109.47072 * 59.99791 * 15 13 12 40 40 H 1.08997 * 109.47205 * 299.99520 * 16 15 13 41 41 H 1.08998 * 109.47615 * 60.00288 * 16 15 13 42 42 H 0.96993 * 120.00143 * 180.02562 * 20 19 17 43 43 H 1.08008 * 119.96816 * 179.76985 * 25 9 8 44 44 H 1.07997 * 120.04347 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2704 -0.0005 6 6 4.0448 2.5134 0.0971 7 6 5.2400 2.6309 0.7942 8 6 5.8618 3.8602 0.8935 9 6 5.3008 4.9712 0.2909 10 6 5.9852 6.3097 0.3960 11 6 5.4835 7.0426 1.6418 12 7 6.1483 8.3440 1.7436 13 6 5.8612 9.1689 2.7701 14 8 5.0521 8.8340 3.6092 15 6 6.5455 10.5074 2.8752 16 6 6.0446 11.2398 4.1216 17 6 6.7285 12.5787 4.2263 18 1 7.4487 12.8771 3.4790 19 6 6.4356 13.4222 5.2769 20 7 7.0327 14.5903 5.3687 21 14 5.1903 12.9057 6.5700 22 1 5.8855 12.1856 7.6670 23 1 4.5168 14.1105 7.1178 24 1 4.1786 12.0104 5.9534 25 6 4.1108 4.8574 -0.4040 26 6 3.4812 3.6321 -0.5025 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9374 0.4596 -0.0685 31 1 5.6808 1.7629 1.2616 32 1 6.7893 3.9530 1.4391 33 1 7.0625 6.1620 0.4705 34 1 5.7603 6.9033 -0.4901 35 1 4.4061 7.1903 1.5672 36 1 5.7083 6.4490 2.5278 37 1 6.7957 8.6118 1.0727 38 1 7.6230 10.3598 2.9494 39 1 6.3204 11.1012 1.9894 40 1 4.9672 11.3875 4.0478 41 1 6.2702 10.6460 5.0073 42 1 6.8268 15.1835 6.1079 43 1 3.6731 5.7277 -0.8705 44 1 2.5516 3.5439 -1.0450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291688673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:26 Heat of formation + Delta-G solvation = -128.568115 kcal Electronic energy + Delta-G solvation = -24930.047138 eV Core-core repulsion = 21038.981802 eV Total energy + Delta-G solvation = -3891.065336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02475 -40.75069 -40.22559 -37.96575 -36.76801 -35.80599 -35.48566 -33.44676 -32.71283 -31.91858 -29.60546 -28.42886 -27.49224 -24.81867 -24.01484 -23.11659 -22.71396 -21.83497 -21.07159 -20.06576 -19.19373 -18.75953 -17.76706 -17.63670 -17.34932 -17.00897 -16.83047 -16.31503 -16.18675 -16.02288 -15.20991 -15.14473 -14.91440 -14.73161 -14.64563 -14.56304 -14.34110 -13.99445 -13.85548 -13.39669 -13.06377 -12.96315 -12.90129 -12.72229 -12.43836 -12.08652 -12.02060 -11.95267 -11.91201 -11.76218 -11.70639 -11.38719 -11.26914 -10.77415 -10.75806 -10.05759 -9.88428 -9.13907 -8.30958 -6.33426 0.17020 0.44683 1.00327 1.32938 1.35105 1.50399 1.55706 1.72086 2.29336 2.35381 2.79456 3.04814 3.11201 3.87181 3.89692 4.04730 4.08078 4.16995 4.18631 4.27912 4.31360 4.43761 4.45421 4.46473 4.51481 4.56006 4.64685 4.68946 4.96142 5.00219 5.05547 5.13146 5.17290 5.25451 5.31315 5.35228 5.46505 5.47184 5.53474 5.62570 5.68733 6.01739 6.18148 6.24546 6.64537 6.73099 7.08447 7.31994 7.36104 8.84591 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.001782 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.196259 B =15705.702910 C =16464.071777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.367 6.367 3 C 0.642 3.358 4 O -0.588 6.588 5 N -0.637 5.637 6 C 0.137 3.863 7 C -0.133 4.133 8 C -0.096 4.096 9 C -0.096 4.096 10 C -0.077 4.077 11 C 0.124 3.876 12 N -0.717 5.717 13 C 0.512 3.488 14 O -0.591 6.591 15 C -0.116 4.116 16 C 0.003 3.997 17 C -0.528 4.528 18 H 0.052 0.948 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.936 3.064 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.104 4.104 26 C -0.136 4.136 27 H 0.140 0.860 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.433 0.567 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.419 0.581 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.007 0.993 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.133 0.867 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -35.074 -17.353 39.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.280 6.280 3 C 0.396 3.604 4 O -0.478 6.478 5 N -0.290 5.290 6 C 0.044 3.956 7 C -0.153 4.153 8 C -0.114 4.114 9 C -0.097 4.097 10 C -0.114 4.114 11 C 0.001 3.999 12 N -0.371 5.371 13 C 0.300 3.700 14 O -0.472 6.472 15 C -0.156 4.156 16 C -0.035 4.035 17 C -0.566 4.566 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.583 5.583 21 Si 0.761 3.239 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.123 4.123 26 C -0.157 4.157 27 H 0.158 0.842 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.272 0.728 31 H 0.173 0.827 32 H 0.169 0.831 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.257 0.743 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.151 0.849 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.942 -34.795 -16.663 39.034 hybrid contribution -0.467 0.096 0.463 0.665 sum -6.409 -34.699 -16.200 38.827 Atomic orbital electron populations 1.23573 0.72294 1.05964 1.02718 1.86261 1.26075 1.29283 1.86408 1.18351 0.83594 0.82574 0.75834 1.91017 1.65292 1.35854 1.55597 1.41819 1.02966 1.09626 1.74593 1.17657 0.94442 0.84280 0.99184 1.21131 0.95195 0.99725 0.99201 1.21201 1.00727 0.91133 0.98351 1.19849 0.95477 0.95632 0.98787 1.20702 1.01443 0.92168 0.97096 1.21306 0.96624 0.83242 0.98766 1.45883 1.45606 1.17971 1.27609 1.21241 0.81352 0.86920 0.80493 1.90647 1.36817 1.77123 1.42570 1.21499 1.01630 0.91521 1.00964 1.19234 0.95847 0.93904 0.94506 1.21447 1.24147 1.01074 1.09981 0.92940 1.25777 0.97753 0.94769 1.00009 1.70015 1.44795 1.10460 1.33046 0.85861 0.80272 0.78018 0.79745 1.19322 1.20335 1.18839 1.21132 0.94810 0.97199 0.99111 1.21277 1.00901 0.92839 1.00642 0.84193 0.92185 0.91767 0.72771 0.82658 0.83091 0.87812 0.88704 0.93468 0.92645 0.74347 0.87624 0.87822 0.97427 0.97384 0.92397 0.84916 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.56 113.37 1.20 1.64 16 2 O -0.37 -5.17 10.62 -55.67 -0.59 -5.76 16 3 C 0.64 11.96 8.59 129.79 1.12 13.08 16 4 O -0.59 -15.17 13.56 19.82 0.27 -14.90 16 5 N -0.64 -8.73 5.34 -429.45 -2.29 -11.02 16 6 C 0.14 2.29 6.30 38.14 0.24 2.53 16 7 C -0.13 -1.68 9.97 22.39 0.22 -1.46 16 8 C -0.10 -1.27 9.69 22.25 0.22 -1.05 16 9 C -0.10 -1.49 5.14 -19.85 -0.10 -1.59 16 10 C -0.08 -1.01 5.45 29.85 0.16 -0.84 16 11 C 0.12 2.70 5.66 86.38 0.49 3.19 16 12 N -0.72 -17.05 5.56 -463.07 -2.57 -19.62 16 13 C 0.51 18.17 7.83 87.66 0.69 18.85 16 14 O -0.59 -26.88 15.98 -3.04 -0.05 -26.93 16 15 C -0.12 -4.36 5.64 29.85 0.17 -4.20 16 16 C 0.00 0.16 3.33 29.85 0.10 0.25 16 17 C -0.53 -30.68 9.66 25.60 0.25 -30.43 16 18 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16 19 C 0.01 0.88 5.47 84.66 0.46 1.34 16 20 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 21 Si 0.94 47.42 27.47 68.60 1.88 49.30 16 22 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.26 -13.41 6.54 99.48 0.65 -12.76 16 25 C -0.10 -1.88 9.69 22.25 0.22 -1.66 16 26 C -0.14 -2.76 8.70 22.39 0.19 -2.56 16 27 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.43 2.82 8.93 -92.71 -0.83 1.99 16 31 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.09 1.02 8.08 -2.38 -0.02 1.00 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.42 6.68 8.47 -92.71 -0.79 5.90 16 38 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 39 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.01 0.39 7.16 -2.39 -0.02 0.38 16 41 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.12 2.86 6.22 -2.91 -0.02 2.84 16 Total: -1.00 -83.73 376.85 1.92 -81.80 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -0.64 Total: 9.02 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.62 Total: -2.92 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.57 Total: -89.62 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.37 Total: -47.59 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.88 Total: 49.30 kcal Total: -83.73 1.92 -81.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291688673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.764 kcal (2) G-P(sol) polarization free energy of solvation -83.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds