Wall clock time and date at job start Tue Mar 31 2020 12:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99728 * 2 1 4 4 H 1.48506 * 109.47041 * 239.99681 * 3 2 1 5 5 H 1.48508 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47366 * 119.99623 * 3 2 1 7 7 C 1.37873 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47145 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47389 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47242 * 179.97438 * 11 10 9 13 13 C 1.46958 * 110.99885 * 189.99850 * 12 11 10 14 14 C 1.53057 * 109.36031 * 183.18688 * 13 12 11 15 15 N 1.46952 * 109.36929 * 301.60075 * 14 13 12 16 16 C 1.39004 * 111.00038 * 183.18914 * 15 14 13 17 17 N 1.32424 * 119.70722 * 295.13814 * 16 15 14 18 18 C 1.31934 * 121.62141 * 180.02562 * 17 16 15 19 19 C 1.38065 * 120.86139 * 359.97438 * 18 17 16 20 20 C 1.38845 * 119.32366 * 0.28316 * 19 18 17 21 21 C 1.38348 * 118.50192 * 359.43278 * 20 19 18 22 22 N 1.47999 * 120.44804 * 180.30352 * 21 20 19 23 23 O 1.21796 * 120.00135 * 5.43996 * 22 21 20 24 24 O 1.21796 * 119.99950 * 185.43232 * 22 21 20 25 25 C 1.46962 * 110.87972 * 59.31857 * 15 14 13 26 26 C 1.46962 * 111.00064 * 313.79990 * 12 11 10 27 27 H 0.97001 * 120.00454 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47308 * 59.99707 * 9 7 2 29 29 H 1.09006 * 109.46989 * 299.98991 * 9 7 2 30 30 H 1.09003 * 109.47055 * 59.99505 * 10 9 7 31 31 H 1.09008 * 109.46932 * 299.99948 * 10 9 7 32 32 H 1.08994 * 109.47032 * 59.99781 * 11 10 9 33 33 H 1.09000 * 109.46610 * 299.99770 * 11 10 9 34 34 H 1.08995 * 109.48589 * 63.22445 * 13 12 11 35 35 H 1.08992 * 109.48890 * 303.15572 * 13 12 11 36 36 H 1.09001 * 109.48250 * 181.63239 * 14 13 12 37 37 H 1.09008 * 109.50681 * 61.58281 * 14 13 12 38 38 H 1.08005 * 119.57051 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.34180 * 180.02562 * 19 18 17 40 40 H 1.07999 * 120.74601 * 179.72123 * 20 19 18 41 41 H 1.09006 * 109.48455 * 60.65317 * 25 15 14 42 42 H 1.08995 * 109.48423 * 180.71038 * 25 15 14 43 43 H 1.08994 * 109.48962 * 296.77747 * 26 12 11 44 44 H 1.09000 * 109.48410 * 56.84420 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7503 -7.3819 -0.2371 14 6 2.7648 -8.5247 -0.1512 15 7 3.8281 -8.3080 -1.1422 16 6 4.7314 -9.3645 -1.1427 17 7 5.4728 -9.5945 -0.0699 18 6 6.3422 -10.5861 -0.0294 19 6 6.5100 -11.4254 -1.1128 20 6 5.7557 -11.2150 -2.2593 21 6 4.8479 -10.1710 -2.2699 22 7 4.0169 -9.9120 -3.4668 23 8 4.0569 -10.6774 -4.4133 24 8 3.2928 -8.9334 -3.5053 25 6 4.5129 -7.0296 -0.9046 26 6 3.4984 -5.8868 -0.9905 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8721 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 0.8536 -5.0451 -0.8885 33 1 0.8542 -5.0445 0.8914 34 1 1.2962 -7.3724 -1.2279 35 1 0.9762 -7.5254 0.5167 36 1 2.2644 -9.4712 -0.3558 37 1 3.1991 -8.5515 0.8482 38 1 6.9302 -10.7434 0.8628 39 1 7.2238 -12.2348 -1.0704 40 1 5.8717 -11.8547 -3.1216 41 1 4.9671 -7.0391 0.0863 42 1 5.2870 -6.8862 -1.6583 43 1 3.0642 -5.8604 -1.9898 44 1 3.9987 -4.9403 -0.7858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298159775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:38 Heat of formation + Delta-G solvation = 60.886666 kcal Electronic energy + Delta-G solvation = -26904.747912 eV Core-core repulsion = 23054.190703 eV Total energy + Delta-G solvation = -3850.557209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43166 -41.06935 -39.14300 -36.68067 -36.08844 -33.68256 -33.55184 -31.99815 -31.14372 -30.61087 -27.75543 -26.80845 -25.42376 -23.98746 -23.58492 -23.04811 -22.13544 -20.19873 -19.57384 -19.50399 -18.83547 -17.99017 -17.63524 -17.08269 -16.33500 -15.87955 -15.59166 -15.00452 -14.79387 -14.62037 -14.50590 -14.37119 -14.11484 -13.86057 -13.63831 -13.06610 -12.39384 -12.25572 -11.71646 -11.65063 -11.44887 -11.32898 -11.28686 -11.23536 -11.12384 -11.02932 -10.97811 -10.78831 -10.56579 -10.48349 -10.32820 -9.98566 -9.60513 -9.30249 -9.02570 -8.98358 -8.30495 -8.03223 -5.95945 -3.98082 -0.59328 0.18125 1.05049 1.17475 2.73712 2.89528 3.36086 3.40271 3.42773 3.61562 3.83098 3.96739 4.11722 4.14447 4.39513 4.49785 4.73040 4.89130 4.99000 5.06178 5.11283 5.28842 5.36040 5.39747 5.43434 5.46093 5.62378 5.79625 5.88552 5.92799 6.05848 6.10962 6.20557 6.33709 6.48686 6.62164 6.72567 6.80978 6.91034 7.10906 7.35643 7.39695 7.57921 7.71658 7.87244 8.04346 8.47265 9.08829 9.65660 11.15459 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.002426 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.164389 B =11538.354354 C =11766.937355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.112 4.112 11 C 0.057 3.943 12 N -0.540 5.540 13 C 0.058 3.942 14 C 0.069 3.931 15 N -0.483 5.483 16 C 0.373 3.627 17 N -0.497 5.497 18 C 0.159 3.841 19 C -0.180 4.180 20 C -0.009 4.009 21 C -0.078 4.078 22 N 0.030 4.970 23 O -0.196 6.196 24 O -0.086 6.086 25 C 0.068 3.932 26 C 0.053 3.947 27 H 0.261 0.739 28 H 0.014 0.986 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.188 -27.357 -1.280 30.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.265 5.265 13 C -0.071 4.071 14 C -0.057 4.057 15 N -0.208 5.208 16 C 0.143 3.857 17 N -0.210 5.210 18 C 0.001 3.999 19 C -0.200 4.200 20 C -0.036 4.036 21 C -0.166 4.166 22 N 0.552 4.448 23 O -0.399 6.399 24 O -0.318 6.318 25 C -0.058 4.058 26 C -0.075 4.075 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.193 0.807 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.362 -26.910 -0.024 30.045 hybrid contribution 0.387 0.348 -1.047 1.169 sum 13.749 -26.561 -1.071 29.928 Atomic orbital electron populations 1.69953 1.06040 1.26651 1.50907 1.25021 0.94839 0.99209 0.95408 0.86671 0.79587 0.83222 0.78583 1.20274 1.21324 1.20271 1.21206 0.92959 0.91088 1.50484 0.92793 1.19060 0.93999 0.91273 0.97169 1.21787 0.99377 0.93115 1.00682 1.22282 0.93931 0.90262 1.00499 1.62298 1.13284 1.02289 1.48669 1.22109 0.95151 0.88763 1.01061 1.22215 0.91419 0.98947 0.93125 1.60667 1.09437 1.00238 1.50433 1.19896 0.89363 0.90114 0.86354 1.68382 1.06982 1.19867 1.25765 1.23212 0.91164 0.87384 0.98173 1.22270 1.02015 1.02758 0.92987 1.21579 0.89526 0.92741 0.99771 1.22073 1.02084 1.03330 0.89084 1.43203 1.00200 1.00262 1.01092 1.94531 1.72814 1.44982 1.27539 1.94671 1.33608 1.17137 1.86411 1.22276 0.96289 0.86105 1.01152 1.22255 0.92983 0.97420 0.94823 0.92985 0.96717 0.96584 0.92637 0.93117 0.94923 0.90984 0.93280 0.89892 0.90986 0.92120 0.80681 0.82291 0.81702 0.91981 0.90740 0.93253 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.30 4.42 -26.73 -0.12 -2.42 16 11 C 0.06 0.99 5.28 -3.83 -0.02 0.97 16 12 N -0.54 -8.13 4.86 -234.47 -1.14 -9.27 16 13 C 0.06 0.75 5.58 -3.76 -0.02 0.72 16 14 C 0.07 0.81 5.46 -3.77 -0.02 0.79 16 15 N -0.48 -5.89 2.60 -173.04 -0.45 -6.34 16 16 C 0.37 4.04 5.32 -155.01 -0.83 3.21 16 17 N -0.50 -4.63 9.64 -12.44 -0.12 -4.75 16 18 C 0.16 0.86 11.17 -17.57 -0.20 0.66 16 19 C -0.18 -0.72 10.10 -39.42 -0.40 -1.12 16 20 C -0.01 -0.06 9.67 -39.32 -0.38 -0.44 16 21 C -0.08 -0.81 6.89 -79.60 -0.55 -1.35 16 22 N 0.03 0.38 4.45 34.13 0.15 0.54 16 23 O -0.20 -2.58 18.53 -29.46 -0.55 -3.12 16 24 O -0.09 -1.26 17.15 -29.46 -0.51 -1.76 16 25 C 0.07 0.85 5.41 -3.77 -0.02 0.83 16 26 C 0.05 0.77 4.93 -3.77 -0.02 0.75 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 1.02 6.26 -51.92 -0.33 0.70 16 32 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.06 0.73 8.01 -51.92 -0.42 0.32 16 38 H 0.18 0.36 8.06 -52.48 -0.42 -0.07 16 39 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 40 H 0.17 0.78 7.70 -52.49 -0.40 0.37 16 41 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.46 5.99 -51.93 -0.31 1.15 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -33.17 364.54 -10.99 -44.16 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.48 Total: -4.73 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -3.12 Total: -10.57 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.82 Total: -46.34 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -1.05 Total: -4.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.17 -10.99 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298159775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.045 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds