Wall clock time and date at job start Tue Mar 31 2020 12:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99728 * 2 1 4 4 H 1.48506 * 109.47041 * 239.99681 * 3 2 1 5 5 H 1.48508 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47366 * 119.99623 * 3 2 1 7 7 C 1.37873 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47145 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47389 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47242 * 179.97438 * 11 10 9 13 13 C 1.46958 * 110.99885 * 189.99850 * 12 11 10 14 14 C 1.53057 * 109.36031 * 183.18688 * 13 12 11 15 15 N 1.46952 * 109.36929 * 301.60075 * 14 13 12 16 16 C 1.39004 * 111.00038 * 183.18914 * 15 14 13 17 17 N 1.32424 * 119.70722 * 295.13814 * 16 15 14 18 18 C 1.31934 * 121.62141 * 180.02562 * 17 16 15 19 19 C 1.38065 * 120.86139 * 359.97438 * 18 17 16 20 20 C 1.38845 * 119.32366 * 0.28316 * 19 18 17 21 21 C 1.38348 * 118.50192 * 359.43278 * 20 19 18 22 22 N 1.47999 * 120.44804 * 180.30352 * 21 20 19 23 23 O 1.21796 * 120.00135 * 5.43996 * 22 21 20 24 24 O 1.21796 * 119.99950 * 185.43232 * 22 21 20 25 25 C 1.46962 * 110.87972 * 59.31857 * 15 14 13 26 26 C 1.46962 * 111.00064 * 313.79990 * 12 11 10 27 27 H 0.97001 * 120.00454 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47308 * 59.99707 * 9 7 2 29 29 H 1.09006 * 109.46989 * 299.98991 * 9 7 2 30 30 H 1.09003 * 109.47055 * 59.99505 * 10 9 7 31 31 H 1.09008 * 109.46932 * 299.99948 * 10 9 7 32 32 H 1.08994 * 109.47032 * 59.99781 * 11 10 9 33 33 H 1.09000 * 109.46610 * 299.99770 * 11 10 9 34 34 H 1.08995 * 109.48589 * 63.22445 * 13 12 11 35 35 H 1.08992 * 109.48890 * 303.15572 * 13 12 11 36 36 H 1.09001 * 109.48250 * 181.63239 * 14 13 12 37 37 H 1.09008 * 109.50681 * 61.58281 * 14 13 12 38 38 H 1.08005 * 119.57051 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.34180 * 180.02562 * 19 18 17 40 40 H 1.07999 * 120.74601 * 179.72123 * 20 19 18 41 41 H 1.09006 * 109.48455 * 60.65317 * 25 15 14 42 42 H 1.08995 * 109.48423 * 180.71038 * 25 15 14 43 43 H 1.08994 * 109.48962 * 296.77747 * 26 12 11 44 44 H 1.09000 * 109.48410 * 56.84420 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7503 -7.3819 -0.2371 14 6 2.7648 -8.5247 -0.1512 15 7 3.8281 -8.3080 -1.1422 16 6 4.7314 -9.3645 -1.1427 17 7 5.4728 -9.5945 -0.0699 18 6 6.3422 -10.5861 -0.0294 19 6 6.5100 -11.4254 -1.1128 20 6 5.7557 -11.2150 -2.2593 21 6 4.8479 -10.1710 -2.2699 22 7 4.0169 -9.9120 -3.4668 23 8 4.0569 -10.6774 -4.4133 24 8 3.2928 -8.9334 -3.5053 25 6 4.5129 -7.0296 -0.9046 26 6 3.4984 -5.8868 -0.9905 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8721 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 0.8536 -5.0451 -0.8885 33 1 0.8542 -5.0445 0.8914 34 1 1.2962 -7.3724 -1.2279 35 1 0.9762 -7.5254 0.5167 36 1 2.2644 -9.4712 -0.3558 37 1 3.1991 -8.5515 0.8482 38 1 6.9302 -10.7434 0.8628 39 1 7.2238 -12.2348 -1.0704 40 1 5.8717 -11.8547 -3.1216 41 1 4.9671 -7.0391 0.0863 42 1 5.2870 -6.8862 -1.6583 43 1 3.0642 -5.8604 -1.9898 44 1 3.9987 -4.9403 -0.7858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298159775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:37 Heat of formation + Delta-G solvation = 40.304092 kcal Electronic energy + Delta-G solvation = -26905.640439 eV Core-core repulsion = 23054.190703 eV Total energy + Delta-G solvation = -3851.449736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.26555 -41.82111 -40.13239 -37.69037 -37.20551 -35.49601 -34.22373 -33.49927 -32.14375 -31.83843 -29.14600 -27.72091 -26.87730 -24.98730 -24.64649 -23.99288 -23.46922 -21.68257 -20.79338 -20.35122 -19.71504 -18.80450 -18.52398 -18.41414 -17.70470 -16.77240 -16.51596 -16.41571 -16.19803 -15.86590 -15.78914 -15.32861 -14.86698 -14.82460 -14.53614 -14.19908 -13.99526 -13.74563 -13.27065 -13.08894 -12.71400 -12.63678 -12.62912 -12.49008 -12.35651 -12.25862 -12.13681 -12.07664 -11.92269 -11.59925 -11.46366 -11.31547 -11.20705 -11.04252 -10.54526 -10.52044 -9.85815 -9.30833 -8.18766 -6.29829 -1.33422 -0.33509 0.23492 0.39476 1.40229 1.43629 1.51431 2.13680 2.20710 2.41667 2.87161 3.08310 3.14245 3.27362 3.45892 3.60703 3.78400 3.92352 4.03473 4.07296 4.21467 4.25473 4.34859 4.41270 4.47171 4.50602 4.63437 4.68192 4.70017 4.79196 4.86865 4.91111 5.02171 5.07337 5.12954 5.24578 5.28801 5.51895 5.53622 5.74759 5.80366 5.86418 6.05334 6.09789 6.27816 6.35697 6.57699 6.86857 7.39178 8.93049 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.002426 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.164389 B =11538.354354 C =11766.937355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.069 3.931 12 N -0.539 5.539 13 C 0.059 3.941 14 C 0.079 3.921 15 N -0.496 5.496 16 C 0.354 3.646 17 N -0.519 5.519 18 C 0.161 3.839 19 C -0.149 4.149 20 C -0.011 4.011 21 C -0.097 4.097 22 N 0.034 4.966 23 O -0.192 6.192 24 O -0.144 6.144 25 C 0.081 3.919 26 C 0.055 3.945 27 H 0.263 0.737 28 H -0.011 1.011 29 H -0.007 1.007 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.215 0.785 39 H 0.208 0.792 40 H 0.185 0.815 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.265 -29.492 -0.386 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.059 4.059 12 N -0.264 5.264 13 C -0.070 4.070 14 C -0.047 4.047 15 N -0.220 5.220 16 C 0.124 3.876 17 N -0.232 5.232 18 C 0.004 3.996 19 C -0.168 4.168 20 C -0.037 4.037 21 C -0.185 4.185 22 N 0.550 4.450 23 O -0.400 6.400 24 O -0.365 6.365 25 C -0.045 4.045 26 C -0.073 4.073 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.011 0.989 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.231 0.769 39 H 0.225 0.775 40 H 0.202 0.798 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.407 -28.995 0.881 33.326 hybrid contribution -0.439 0.800 -1.283 1.574 sum 15.967 -28.195 -0.402 32.405 Atomic orbital electron populations 1.70093 1.07812 1.27817 1.51694 1.25993 0.95782 1.03393 0.94762 0.85506 0.78284 0.78090 0.79200 1.19221 1.20823 1.19069 1.21660 0.93528 0.92366 1.50507 0.92192 1.18958 0.94387 0.93042 0.94729 1.21525 0.98152 0.92783 1.00779 1.22026 0.93844 0.89804 1.00212 1.62291 1.12873 1.02276 1.48942 1.22167 0.95850 0.88135 1.00812 1.22087 0.91122 0.98440 0.93058 1.60525 1.10226 1.00617 1.50626 1.19764 0.90244 0.90297 0.87266 1.68375 1.07978 1.21717 1.25131 1.23991 0.89789 0.85900 0.99935 1.22804 1.00724 1.02550 0.90769 1.22007 0.88580 0.91609 1.01525 1.22258 1.03287 1.05303 0.87643 1.43613 1.00012 0.99609 1.01764 1.94480 1.72399 1.44522 1.28592 1.94675 1.36001 1.18427 1.87378 1.22058 0.95489 0.85968 1.01024 1.22209 0.93128 0.98189 0.93776 0.92780 0.99307 0.98881 0.92609 0.92780 0.95741 0.90842 0.94437 0.88627 0.90098 0.92257 0.76859 0.77475 0.79815 0.92205 0.90425 0.94740 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.44 4.97 29.85 0.15 1.58 16 10 C -0.09 -4.02 4.42 30.59 0.14 -3.88 16 11 C 0.07 2.47 5.28 86.30 0.46 2.93 16 12 N -0.54 -16.58 4.86 -895.74 -4.35 -20.93 16 13 C 0.06 1.54 5.58 86.31 0.48 2.02 16 14 C 0.08 1.84 5.46 86.31 0.47 2.32 16 15 N -0.50 -12.23 2.60 -701.37 -1.82 -14.05 16 16 C 0.35 7.33 5.32 133.05 0.71 8.04 16 17 N -0.52 -8.46 9.64 -193.27 -1.86 -10.33 16 18 C 0.16 1.04 11.17 84.64 0.95 1.98 16 19 C -0.15 -0.43 10.10 22.37 0.23 -0.20 16 20 C -0.01 -0.11 9.67 22.44 0.22 0.11 16 21 C -0.10 -1.88 6.89 36.61 0.25 -1.63 16 22 N 0.03 0.88 4.45 -45.92 -0.20 0.68 16 23 O -0.19 -5.02 18.53 18.89 0.35 -4.67 16 24 O -0.14 -4.51 17.15 18.89 0.32 -4.18 16 25 C 0.08 2.06 5.41 86.31 0.47 2.53 16 26 C 0.06 1.65 4.93 86.31 0.43 2.07 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 2.24 6.26 -2.38 -0.01 2.23 16 32 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 1.73 8.13 -2.39 -0.02 1.71 16 37 H 0.06 1.39 8.01 -2.38 -0.02 1.37 16 38 H 0.21 -0.34 8.06 -2.91 -0.02 -0.37 16 39 H 0.21 -1.33 8.06 -2.91 -0.02 -1.36 16 40 H 0.18 1.07 7.70 -2.91 -0.02 1.05 16 41 H 0.06 1.53 7.91 -2.38 -0.02 1.51 16 42 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 2.76 5.99 -2.39 -0.01 2.74 16 Total: -1.00 -75.53 364.54 1.37 -74.16 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.00 Total: 3.13 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.63 Total: -13.15 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -7.96 Total: -102.39 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.67 Total: -8.85 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.53 1.37 -74.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298159775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.469 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds