Wall clock time and date at job start Tue Mar 31 2020 12:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38066 * 120.33765 * 2 1 4 4 N 1.31945 * 120.85585 * 180.02562 * 3 2 1 5 5 C 1.32425 * 121.62130 * 0.02562 * 4 3 2 6 6 N 1.39011 * 119.70498 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99957 * 5.47699 * 6 5 4 8 8 C 1.52992 * 109.47374 * 180.02562 * 7 6 5 9 9 C 1.53039 * 109.46345 * 185.00083 * 8 7 6 10 10 C 1.53192 * 109.31320 * 178.61475 * 9 8 7 11 11 N 1.46925 * 108.89648 * 54.56332 * 10 9 8 12 12 C 1.36933 * 120.63458 * 126.46354 * 11 10 9 13 13 H 1.08004 * 120.00103 * 323.39064 * 12 11 10 14 14 C 1.38812 * 120.00417 * 143.39032 * 12 11 10 15 15 N 1.31621 * 119.99336 * 0.39461 * 14 12 11 16 16 Si 1.86791 * 120.00318 * 180.39394 * 14 12 11 17 17 H 1.48497 * 109.47444 * 59.99925 * 16 14 12 18 18 H 1.48505 * 109.47408 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46969 * 299.99794 * 16 14 12 20 20 C 1.46968 * 118.71237 * 306.64431 * 11 10 9 21 21 C 1.53042 * 109.46248 * 64.92893 * 8 7 6 22 22 C 1.39095 * 120.59241 * 0.27299 * 5 4 3 23 23 N 1.47998 * 120.45523 * 179.70667 * 22 5 4 24 24 O 1.21794 * 120.00183 * 172.67830 * 23 22 5 25 25 O 1.21806 * 119.99694 * 352.66950 * 23 22 5 26 26 C 1.38350 * 119.09591 * 359.45779 * 22 5 4 27 27 H 1.09004 * 109.47215 * 90.00080 * 1 2 3 28 28 H 1.09001 * 109.47237 * 209.99756 * 1 2 3 29 29 H 1.08997 * 109.47330 * 330.00063 * 1 2 3 30 30 H 1.07999 * 119.57349 * 0.04565 * 3 2 1 31 31 H 0.96997 * 120.00340 * 185.47791 * 6 5 4 32 32 H 1.09002 * 109.47515 * 59.99910 * 7 6 5 33 33 H 1.09004 * 109.47156 * 300.00590 * 7 6 5 34 34 H 1.09005 * 109.44912 * 304.96796 * 8 7 6 35 35 H 1.08998 * 109.49947 * 58.66182 * 9 8 7 36 36 H 1.09002 * 109.49529 * 298.56501 * 9 8 7 37 37 H 1.09003 * 109.58559 * 174.41890 * 10 9 8 38 38 H 1.08994 * 109.58846 * 294.70279 * 10 9 8 39 39 H 0.97001 * 119.99764 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.46184 * 293.56630 * 20 11 10 41 41 H 1.09003 * 109.70632 * 173.28452 * 20 11 10 42 42 H 1.09004 * 109.49621 * 301.34321 * 21 8 7 43 43 H 1.09001 * 109.49269 * 61.39957 * 21 8 7 44 44 H 1.07995 * 120.74508 * 180.25689 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5237 1.2035 -0.0005 5 6 4.2282 0.0822 -0.0015 6 7 5.6170 0.1413 -0.0015 7 6 6.2952 1.4341 0.1208 8 6 7.8098 1.2201 0.0932 9 6 8.5178 2.5532 0.3456 10 6 10.0332 2.3288 0.3517 11 7 10.4214 1.6675 -0.9015 12 6 11.4014 2.1990 -1.6965 13 1 11.4916 3.2704 -1.7992 14 6 12.2792 1.3610 -2.3704 15 7 12.1644 0.0552 -2.2514 16 14 13.6229 2.0863 -3.4462 17 1 14.5095 2.9444 -2.6198 18 1 14.4194 0.9886 -4.0511 19 1 13.0079 2.9027 -4.5235 20 6 9.7346 0.4267 -1.2871 21 6 8.2227 0.6723 -1.2749 22 6 3.5909 -1.1542 -0.0078 23 7 4.3813 -2.4054 -0.0155 24 8 3.8221 -3.4797 0.1135 25 8 5.5909 -2.3608 -0.1509 26 6 2.2082 -1.1983 -0.0016 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6629 2.1261 0.0007 31 1 6.1372 -0.6735 -0.0824 32 1 6.0116 1.9057 1.0617 33 1 6.0043 2.0770 -0.7100 34 1 8.0899 0.5075 0.8692 35 1 8.2056 2.9541 1.3099 36 1 8.2577 3.2584 -0.4437 37 1 10.5443 3.2883 0.4320 38 1 10.3058 1.6977 1.1976 39 1 12.7775 -0.5305 -2.7226 40 1 9.9826 -0.3616 -0.5764 41 1 10.0484 0.1286 -2.2876 42 1 7.7001 -0.2655 -1.4640 43 1 7.9647 1.3950 -2.0490 44 1 1.6860 -2.1436 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301635012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:01 Heat of formation + Delta-G solvation = 51.134650 kcal Electronic energy + Delta-G solvation = -26998.242688 eV Core-core repulsion = 23147.262600 eV Total energy + Delta-G solvation = -3850.980088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.40619 -40.67308 -38.26104 -36.90462 -35.93281 -33.87834 -33.34659 -32.21382 -30.51834 -29.81224 -27.60699 -26.98903 -26.09194 -24.34474 -23.01121 -22.56028 -21.98217 -20.95653 -19.24220 -18.98285 -18.89395 -18.12401 -17.67521 -16.98400 -16.71468 -15.45319 -15.22458 -14.79074 -14.61914 -14.31364 -13.91892 -13.77541 -13.48070 -13.42405 -13.35556 -13.04914 -12.69837 -12.48729 -12.23800 -11.99871 -11.62339 -11.38985 -11.31354 -11.26653 -10.87392 -10.77161 -10.72369 -10.64291 -10.41591 -10.22968 -10.18487 -10.09785 -9.89787 -9.55035 -9.40369 -8.43126 -8.20432 -6.49655 -5.76224 -3.30172 -0.31405 0.76478 1.14187 1.28198 2.79304 3.12281 3.39040 3.44287 3.44961 3.84425 4.01584 4.28222 4.34575 4.49868 4.51181 4.99662 5.03134 5.11325 5.14472 5.21016 5.38821 5.39514 5.45040 5.56910 5.59695 5.74172 5.84007 5.87764 6.00979 6.16961 6.21669 6.34473 6.47703 6.61859 6.68287 6.75624 6.79744 6.86146 6.90997 7.01812 7.45905 7.50733 7.72013 7.78927 7.81909 8.55479 9.27524 9.86273 10.47785 11.31150 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.002788 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.812845 B =10041.006600 C =10757.045257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.214 4.214 3 C 0.211 3.789 4 N -0.527 5.527 5 C 0.462 3.538 6 N -0.679 5.679 7 C 0.123 3.877 8 C -0.093 4.093 9 C -0.122 4.122 10 C 0.146 3.854 11 N -0.593 5.593 12 C -0.257 4.257 13 H 0.061 0.939 14 C 0.010 3.990 15 N -0.903 5.903 16 Si 0.904 3.096 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.172 3.828 21 C -0.137 4.137 22 C -0.176 4.176 23 N 0.055 4.945 24 O -0.160 6.160 25 O -0.191 6.191 26 C 0.034 3.966 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.174 0.826 31 H 0.428 0.572 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.017 0.983 39 H 0.255 0.745 40 H 0.017 0.983 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.517 0.885 6.013 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.221 4.221 3 C 0.048 3.952 4 N -0.245 5.245 5 C 0.219 3.781 6 N -0.318 5.318 7 C -0.001 4.001 8 C -0.112 4.112 9 C -0.162 4.162 10 C 0.020 3.980 11 N -0.316 5.316 12 C -0.387 4.387 13 H 0.079 0.921 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.733 3.267 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.046 3.954 21 C -0.177 4.177 22 C -0.271 4.271 23 N 0.564 4.436 24 O -0.377 6.377 25 O -0.391 6.391 26 C 0.008 3.992 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.191 0.809 31 H 0.280 0.720 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.935 2.207 5.934 24.758 hybrid contribution 0.630 -1.092 -0.608 1.400 sum -23.305 1.114 5.326 23.932 Atomic orbital electron populations 1.20581 0.88786 1.03389 1.02763 1.20588 0.98338 0.92150 1.10982 1.22947 0.88404 0.98404 0.85471 1.67766 1.08679 1.25931 1.22106 1.18191 0.87073 0.86509 0.86354 1.46352 1.01100 1.13611 1.70737 1.21772 0.92898 0.83553 1.01828 1.21336 0.90958 0.99089 0.99770 1.21977 0.98801 0.95384 1.00069 1.20892 0.91067 0.96544 0.89525 1.43955 1.41404 1.26728 1.19495 1.19072 1.05924 0.91109 1.22584 0.92143 1.25357 0.97470 0.95491 1.00631 1.69916 1.38203 1.01764 1.44761 0.86367 0.82153 0.78013 0.80149 1.20827 1.21572 1.20961 1.20821 0.85384 0.87573 1.01615 1.22296 1.01435 0.99139 0.94798 1.21431 0.92897 0.83370 1.29369 1.43293 1.00946 1.02324 0.97027 1.94507 1.73216 1.16857 1.53074 1.94260 0.96743 1.92409 1.55669 1.21138 0.89928 1.00599 0.87554 0.90965 0.91197 0.90897 0.80903 0.72025 0.91587 0.90921 0.91174 0.93034 0.92106 0.92743 0.96527 0.93451 0.96446 0.89131 0.93450 0.92698 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 10.03 36.00 0.36 0.00 16 2 C -0.21 -1.50 5.90 -104.46 -0.62 -2.11 16 3 C 0.21 1.64 10.85 -17.57 -0.19 1.45 16 4 N -0.53 -6.04 9.58 -12.44 -0.12 -6.16 16 5 C 0.46 6.07 7.46 -155.01 -1.16 4.91 16 6 N -0.68 -9.69 5.31 -60.43 -0.32 -10.01 16 7 C 0.12 1.72 5.09 -4.05 -0.02 1.70 16 8 C -0.09 -1.52 2.19 -90.58 -0.20 -1.72 16 9 C -0.12 -2.06 5.36 -26.61 -0.14 -2.20 16 10 C 0.15 3.06 6.51 -3.71 -0.02 3.03 16 11 N -0.59 -14.95 2.99 -172.29 -0.52 -15.47 16 12 C -0.26 -7.10 9.54 -15.06 -0.14 -7.24 16 13 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 14 C 0.01 0.27 5.25 -17.43 -0.09 0.18 16 15 N -0.90 -26.42 10.89 55.49 0.60 -25.82 16 16 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.17 4.16 5.22 -3.69 -0.02 4.14 16 21 C -0.14 -2.65 5.25 -26.61 -0.14 -2.79 16 22 C -0.18 -2.20 6.88 -79.60 -0.55 -2.75 16 23 N 0.05 0.80 4.45 34.13 0.15 0.96 16 24 O -0.16 -2.33 18.54 -29.46 -0.55 -2.87 16 25 O -0.19 -3.11 15.76 -29.46 -0.46 -3.58 16 26 C 0.03 0.31 9.35 -39.32 -0.37 -0.06 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 29 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 30 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.43 6.56 4.09 -41.10 -0.17 6.39 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 2.48 6.18 -51.93 -0.32 2.16 16 42 H 0.05 0.86 7.15 -51.93 -0.37 0.49 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.16 1.13 7.71 -52.49 -0.40 0.72 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -31.49 359.98 -10.40 -41.88 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.29 Total: 2.32 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.30 Total: -3.47 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.20 Total: -56.50 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -1.01 Total: -6.45 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.49 -10.40 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301635012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.017 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds