Wall clock time and date at job start Tue Mar 31 2020 12:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38066 * 120.33765 * 2 1 4 4 N 1.31945 * 120.85585 * 180.02562 * 3 2 1 5 5 C 1.32425 * 121.62130 * 0.02562 * 4 3 2 6 6 N 1.39011 * 119.70498 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99957 * 5.47699 * 6 5 4 8 8 C 1.52992 * 109.47374 * 180.02562 * 7 6 5 9 9 C 1.53039 * 109.46345 * 185.00083 * 8 7 6 10 10 C 1.53192 * 109.31320 * 178.61475 * 9 8 7 11 11 N 1.46925 * 108.89648 * 54.56332 * 10 9 8 12 12 C 1.36933 * 120.63458 * 126.46354 * 11 10 9 13 13 H 1.08004 * 120.00103 * 323.39064 * 12 11 10 14 14 C 1.38812 * 120.00417 * 143.39032 * 12 11 10 15 15 N 1.31621 * 119.99336 * 0.39461 * 14 12 11 16 16 Si 1.86791 * 120.00318 * 180.39394 * 14 12 11 17 17 H 1.48497 * 109.47444 * 59.99925 * 16 14 12 18 18 H 1.48505 * 109.47408 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46969 * 299.99794 * 16 14 12 20 20 C 1.46968 * 118.71237 * 306.64431 * 11 10 9 21 21 C 1.53042 * 109.46248 * 64.92893 * 8 7 6 22 22 C 1.39095 * 120.59241 * 0.27299 * 5 4 3 23 23 N 1.47998 * 120.45523 * 179.70667 * 22 5 4 24 24 O 1.21794 * 120.00183 * 172.67830 * 23 22 5 25 25 O 1.21806 * 119.99694 * 352.66950 * 23 22 5 26 26 C 1.38350 * 119.09591 * 359.45779 * 22 5 4 27 27 H 1.09004 * 109.47215 * 90.00080 * 1 2 3 28 28 H 1.09001 * 109.47237 * 209.99756 * 1 2 3 29 29 H 1.08997 * 109.47330 * 330.00063 * 1 2 3 30 30 H 1.07999 * 119.57349 * 0.04565 * 3 2 1 31 31 H 0.96997 * 120.00340 * 185.47791 * 6 5 4 32 32 H 1.09002 * 109.47515 * 59.99910 * 7 6 5 33 33 H 1.09004 * 109.47156 * 300.00590 * 7 6 5 34 34 H 1.09005 * 109.44912 * 304.96796 * 8 7 6 35 35 H 1.08998 * 109.49947 * 58.66182 * 9 8 7 36 36 H 1.09002 * 109.49529 * 298.56501 * 9 8 7 37 37 H 1.09003 * 109.58559 * 174.41890 * 10 9 8 38 38 H 1.08994 * 109.58846 * 294.70279 * 10 9 8 39 39 H 0.97001 * 119.99764 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.46184 * 293.56630 * 20 11 10 41 41 H 1.09003 * 109.70632 * 173.28452 * 20 11 10 42 42 H 1.09004 * 109.49621 * 301.34321 * 21 8 7 43 43 H 1.09001 * 109.49269 * 61.39957 * 21 8 7 44 44 H 1.07995 * 120.74508 * 180.25689 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5237 1.2035 -0.0005 5 6 4.2282 0.0822 -0.0015 6 7 5.6170 0.1413 -0.0015 7 6 6.2952 1.4341 0.1208 8 6 7.8098 1.2201 0.0932 9 6 8.5178 2.5532 0.3456 10 6 10.0332 2.3288 0.3517 11 7 10.4214 1.6675 -0.9015 12 6 11.4014 2.1990 -1.6965 13 1 11.4916 3.2704 -1.7992 14 6 12.2792 1.3610 -2.3704 15 7 12.1644 0.0552 -2.2514 16 14 13.6229 2.0863 -3.4462 17 1 14.5095 2.9444 -2.6198 18 1 14.4194 0.9886 -4.0511 19 1 13.0079 2.9027 -4.5235 20 6 9.7346 0.4267 -1.2871 21 6 8.2227 0.6723 -1.2749 22 6 3.5909 -1.1542 -0.0078 23 7 4.3813 -2.4054 -0.0155 24 8 3.8221 -3.4797 0.1135 25 8 5.5909 -2.3608 -0.1509 26 6 2.2082 -1.1983 -0.0016 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6629 2.1261 0.0007 31 1 6.1372 -0.6735 -0.0824 32 1 6.0116 1.9057 1.0617 33 1 6.0043 2.0770 -0.7100 34 1 8.0899 0.5075 0.8692 35 1 8.2056 2.9541 1.3099 36 1 8.2577 3.2584 -0.4437 37 1 10.5443 3.2883 0.4320 38 1 10.3058 1.6977 1.1976 39 1 12.7775 -0.5305 -2.7226 40 1 9.9826 -0.3616 -0.5764 41 1 10.0484 0.1286 -2.2876 42 1 7.7001 -0.2655 -1.4640 43 1 7.9647 1.3950 -2.0490 44 1 1.6860 -2.1436 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301635012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:00 Heat of formation + Delta-G solvation = 33.528494 kcal Electronic energy + Delta-G solvation = -26999.006149 eV Core-core repulsion = 23147.262600 eV Total energy + Delta-G solvation = -3851.743548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.41479 -41.50802 -39.69858 -38.05526 -37.11587 -35.23914 -34.27861 -33.46109 -32.07367 -31.54079 -28.73657 -27.98331 -27.08430 -25.86719 -24.21658 -23.83992 -23.18007 -22.43741 -20.81427 -19.95905 -19.91402 -19.08126 -18.71503 -18.60134 -17.86540 -16.88989 -16.34250 -16.16850 -15.63200 -15.45255 -15.28362 -15.19211 -14.83199 -14.57914 -14.13938 -13.95976 -13.88922 -13.87139 -13.37955 -13.12026 -12.95618 -12.75000 -12.73361 -12.63927 -12.44127 -12.39997 -12.31137 -12.00367 -11.89418 -11.63910 -11.53169 -11.35888 -11.22440 -11.04590 -10.89962 -10.54538 -9.06855 -8.54549 -7.87533 -5.45378 -1.25267 0.03417 0.21107 0.33920 1.45049 1.47511 1.54246 1.85123 2.37588 2.48916 3.06863 3.23176 3.28195 3.59529 3.69961 3.70576 3.79737 3.90556 3.98790 4.03961 4.38953 4.49758 4.51408 4.59610 4.62752 4.66915 4.73361 4.91838 4.93569 4.96883 5.01328 5.11229 5.14040 5.19024 5.25254 5.26933 5.39859 5.42965 5.54116 5.63375 5.77112 5.80310 5.96769 6.43212 6.44371 6.75216 7.17044 7.84887 8.40737 9.17400 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.002788 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.812845 B =10041.006600 C =10757.045257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.190 4.190 3 C 0.214 3.786 4 N -0.542 5.542 5 C 0.447 3.553 6 N -0.695 5.695 7 C 0.140 3.860 8 C -0.084 4.084 9 C -0.110 4.110 10 C 0.140 3.860 11 N -0.612 5.612 12 C -0.268 4.268 13 H 0.065 0.935 14 C -0.048 4.048 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.273 1.273 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.179 3.821 21 C -0.121 4.121 22 C -0.193 4.193 23 N 0.057 4.943 24 O -0.157 6.157 25 O -0.245 6.245 26 C 0.026 3.974 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.217 0.783 31 H 0.421 0.579 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.011 0.989 39 H 0.250 0.750 40 H -0.009 1.009 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.038 3.117 6.634 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.195 4.195 3 C 0.052 3.948 4 N -0.261 5.261 5 C 0.205 3.795 6 N -0.335 5.335 7 C 0.017 3.983 8 C -0.103 4.103 9 C -0.149 4.149 10 C 0.014 3.986 11 N -0.336 5.336 12 C -0.398 4.398 13 H 0.083 0.917 14 C -0.243 4.243 15 N -0.581 5.581 16 Si 0.798 3.202 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.201 1.201 20 C 0.054 3.946 21 C -0.160 4.160 22 C -0.287 4.287 23 N 0.560 4.440 24 O -0.377 6.377 25 O -0.433 6.433 26 C -0.001 4.001 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.233 0.767 31 H 0.271 0.729 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.009 0.991 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -27.430 4.478 6.567 28.558 hybrid contribution 1.474 -1.741 -0.757 2.403 sum -25.956 2.737 5.809 26.739 Atomic orbital electron populations 1.20725 0.85771 1.05011 1.03976 1.21039 1.00146 0.90869 1.07489 1.23770 0.87312 1.00509 0.83200 1.67841 1.10407 1.25076 1.22744 1.18342 0.86708 0.87314 0.87089 1.46308 1.01972 1.13061 1.72178 1.21506 0.90484 0.83723 1.02626 1.21200 0.93197 0.98647 0.97278 1.21826 0.95393 0.95476 1.02196 1.21081 0.94120 0.96001 0.87359 1.44222 1.41543 1.26875 1.20985 1.19442 1.06214 0.91455 1.22720 0.91714 1.26154 0.99814 0.95819 1.02546 1.70122 1.38948 1.03010 1.46047 0.85301 0.79245 0.77096 0.78519 1.19912 1.22062 1.20087 1.20549 0.88559 0.86970 0.98552 1.22028 0.97581 0.99510 0.96872 1.21695 0.93900 0.81954 1.31198 1.43649 1.00850 1.03064 0.96484 1.94456 1.72949 1.17908 1.52385 1.94262 0.97906 1.92767 1.58347 1.21524 0.88516 1.02475 0.87539 0.89757 0.90315 0.88667 0.76697 0.72948 0.89917 0.90966 0.91839 0.89274 0.91997 0.92392 0.97064 0.94081 0.99125 0.92940 0.93001 0.93154 0.80594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 10.03 71.23 0.71 0.48 16 2 C -0.19 -1.89 5.90 -19.76 -0.12 -2.01 16 3 C 0.21 2.45 10.85 84.63 0.92 3.37 16 4 N -0.54 -11.03 9.58 -193.26 -1.85 -12.88 16 5 C 0.45 11.32 7.46 133.04 0.99 12.31 16 6 N -0.70 -19.84 5.31 -345.09 -1.83 -21.67 16 7 C 0.14 3.74 5.09 86.38 0.44 4.18 16 8 C -0.08 -2.74 2.19 -10.77 -0.02 -2.76 16 9 C -0.11 -3.51 5.36 30.67 0.16 -3.35 16 10 C 0.14 5.83 6.51 86.36 0.56 6.39 16 11 N -0.61 -31.78 2.99 -699.01 -2.09 -33.87 16 12 C -0.27 -15.11 9.54 84.03 0.80 -14.31 16 13 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 14 C -0.05 -2.74 5.25 84.86 0.45 -2.30 16 15 N -0.94 -57.27 10.89 21.65 0.24 -57.03 16 16 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.18 9.18 5.22 86.35 0.45 9.63 16 21 C -0.12 -4.81 5.25 30.67 0.16 -4.65 16 22 C -0.19 -4.69 6.88 36.61 0.25 -4.43 16 23 N 0.06 1.72 4.45 -45.92 -0.20 1.51 16 24 O -0.16 -4.61 18.54 18.89 0.35 -4.26 16 25 O -0.24 -8.51 15.76 18.88 0.30 -8.21 16 26 C 0.03 0.41 9.35 22.44 0.21 0.62 16 27 H 0.08 0.11 8.14 -2.38 -0.02 0.09 16 28 H 0.08 0.13 8.09 -2.39 -0.02 0.11 16 29 H 0.09 -0.11 8.09 -2.39 -0.02 -0.13 16 30 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 31 H 0.42 13.46 4.09 -97.20 -0.40 13.07 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.05 3.06 6.18 -2.39 -0.01 3.04 16 42 H 0.05 2.00 7.15 -2.38 -0.02 1.98 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.18 2.06 7.71 -2.91 -0.02 2.04 16 Total: -1.00 -72.94 359.98 3.52 -69.41 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.62 Total: 16.02 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.97 Total: 3.17 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -5.74 Total: -123.93 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.65 Total: -12.47 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.94 3.52 -69.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301635012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.941 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds