Wall clock time and date at job start Tue Mar 31 2020 12:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38887 * 120.74512 * 2 1 4 4 C 1.38017 * 119.32952 * 179.97438 * 3 2 1 5 5 N 1.31972 * 120.85696 * 359.74559 * 4 3 2 6 6 C 1.32397 * 121.62031 * 0.52509 * 5 4 3 7 7 N 1.39002 * 119.70570 * 179.75320 * 6 5 4 8 8 C 1.46505 * 120.00104 * 359.72659 * 7 6 5 9 9 C 1.52993 * 109.47444 * 179.97438 * 8 7 6 10 10 C 1.53034 * 109.46311 * 174.99679 * 9 8 7 11 11 C 1.53194 * 109.31631 * 181.38607 * 10 9 8 12 12 N 1.46928 * 108.88836 * 305.29172 * 11 10 9 13 13 C 1.36934 * 120.63084 * 233.67060 * 12 11 10 14 14 H 1.07993 * 120.00334 * 27.39912 * 13 12 11 15 15 C 1.38820 * 119.99795 * 207.39526 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.26991 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.26997 * 15 13 12 18 18 H 1.48498 * 109.47115 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46875 * 120.00003 * 17 15 13 20 20 H 1.48497 * 109.47091 * 240.00248 * 17 15 13 21 21 C 1.47211 * 118.55611 * 53.54535 * 12 11 10 22 22 C 1.53045 * 109.45980 * 295.06596 * 9 8 7 23 23 C 1.38288 * 120.74914 * 179.97438 * 2 1 3 24 24 N 1.35504 * 120.45446 * 0.02562 * 23 2 1 25 25 O 1.21801 * 119.99645 * 270.02578 * 24 23 2 26 26 O 1.21802 * 120.00137 * 90.01821 * 24 23 2 27 27 H 1.08998 * 109.47404 * 270.02578 * 1 2 3 28 28 H 1.09000 * 109.47069 * 30.02412 * 1 2 3 29 29 H 1.09001 * 109.46828 * 150.02271 * 1 2 3 30 30 H 1.08004 * 120.33127 * 359.95519 * 3 2 1 31 31 H 1.08010 * 119.57185 * 180.02562 * 4 3 2 32 32 H 0.97002 * 120.00421 * 179.72161 * 7 6 5 33 33 H 1.09001 * 109.47217 * 59.99277 * 8 7 6 34 34 H 1.09000 * 109.46657 * 299.99725 * 8 7 6 35 35 H 1.08998 * 109.44868 * 55.02805 * 9 8 7 36 36 H 1.08997 * 109.49513 * 61.43477 * 10 9 8 37 37 H 1.09004 * 109.49828 * 301.33704 * 10 9 8 38 38 H 1.09000 * 109.58642 * 65.14938 * 11 10 9 39 39 H 1.09000 * 109.58560 * 185.43802 * 11 10 9 40 40 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.53679 * 186.67414 * 21 12 11 42 42 H 1.08996 * 109.68174 * 66.35764 * 21 12 11 43 43 H 1.09000 * 109.49621 * 298.56598 * 22 9 8 44 44 H 1.09003 * 109.49716 * 58.62965 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1937 0.0000 4 6 3.5968 1.1596 0.0005 5 7 4.2455 0.0103 0.0061 6 6 3.6049 -1.1484 0.0010 7 7 4.3282 -2.3354 0.0019 8 6 5.7928 -2.3007 0.0025 9 6 6.3369 -3.7306 0.0042 10 6 7.8617 -3.6962 -0.1210 11 6 8.4000 -5.1301 -0.1539 12 7 7.9107 -5.8490 1.0304 13 6 8.7845 -6.4871 1.8696 14 1 9.8021 -6.1364 1.9580 15 6 8.3624 -7.5849 2.6070 16 7 7.2618 -8.2218 2.2675 17 14 9.3564 -8.1581 4.0811 18 1 10.5412 -7.2792 4.2512 19 1 8.5134 -8.0935 5.3020 20 1 9.8045 -9.5568 3.8623 21 6 6.4627 -5.8654 1.2953 22 6 5.9463 -4.4232 1.3119 23 6 2.2140 -1.1885 0.0005 24 7 1.5613 -2.3759 0.0005 25 8 1.2672 -2.9091 1.0554 26 8 1.2687 -2.9100 -1.0543 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6947 2.1390 -0.0007 31 1 4.1529 2.0855 0.0010 32 1 3.8633 -3.1867 0.0023 33 1 6.1436 -1.7778 0.8923 34 1 6.1442 -1.7789 -0.8877 35 1 5.9157 -4.2802 -0.8376 36 1 8.2850 -3.1682 0.7334 37 1 8.1397 -3.1821 -1.0412 38 1 8.0497 -5.6313 -1.0562 39 1 9.4898 -5.1115 -0.1457 40 1 6.9670 -8.9892 2.7826 41 1 6.2743 -6.3320 2.2621 42 1 5.9527 -6.4271 0.5128 43 1 6.3876 -3.8883 2.1528 44 1 4.8608 -4.4262 1.4118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301645950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:49 Heat of formation + Delta-G solvation = 62.483808 kcal Electronic energy + Delta-G solvation = -27222.834306 eV Core-core repulsion = 23372.346355 eV Total energy + Delta-G solvation = -3850.487952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.25779 -40.60245 -38.30858 -36.63822 -36.25187 -34.62920 -33.52805 -31.72797 -30.32573 -29.86896 -28.95749 -27.20263 -26.21396 -24.14076 -23.10227 -22.41049 -21.96743 -21.06213 -19.62250 -19.25294 -19.06015 -18.72728 -17.60168 -16.75188 -16.20627 -15.55800 -15.39009 -14.87447 -14.80881 -14.39132 -13.94839 -13.81120 -13.55118 -13.51058 -13.39544 -13.16258 -12.71335 -12.54517 -12.33796 -12.08081 -11.76820 -11.49189 -11.41703 -11.19904 -11.03345 -10.78881 -10.72698 -10.48930 -10.35897 -10.29107 -10.23803 -10.14901 -9.91103 -9.58917 -9.47422 -8.47932 -8.37510 -6.68813 -5.78765 -3.20804 0.21373 0.27419 0.74279 1.80188 2.59730 3.07867 3.37484 3.45372 3.47433 3.72715 3.99845 4.25622 4.31587 4.49722 4.61436 4.86698 4.90564 4.94502 5.07261 5.13299 5.28842 5.32542 5.40239 5.47433 5.52763 5.67752 5.78706 5.81781 5.92845 6.08785 6.24778 6.32546 6.41294 6.51962 6.56815 6.63883 6.70410 6.74586 6.78353 6.94667 7.34548 7.43636 7.51459 7.64633 7.79547 8.44269 9.20530 9.84337 10.41268 11.29918 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002933 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.676571 B = 9545.408861 C =10188.856906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 C -0.241 4.241 4 C 0.199 3.801 5 N -0.526 5.526 6 C 0.467 3.533 7 N -0.701 5.701 8 C 0.132 3.868 9 C -0.094 4.094 10 C -0.122 4.122 11 C 0.146 3.854 12 N -0.592 5.592 13 C -0.253 4.253 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.171 3.829 22 C -0.135 4.135 23 C -0.199 4.199 24 N 0.063 4.937 25 O -0.149 6.149 26 O -0.157 6.157 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.174 0.826 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.018 0.982 43 H 0.057 0.943 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 21.179 -6.045 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 C -0.264 4.264 4 C 0.039 3.961 5 N -0.245 5.245 6 C 0.226 3.774 7 N -0.328 5.328 8 C 0.010 3.990 9 C -0.113 4.113 10 C -0.162 4.162 11 C 0.019 3.981 12 N -0.315 5.315 13 C -0.382 4.382 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.217 1.217 21 C 0.045 3.955 22 C -0.175 4.175 23 C -0.294 4.294 24 N 0.588 4.412 25 O -0.367 6.367 26 O -0.372 6.372 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.169 0.831 31 H 0.191 0.809 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.124 21.585 -5.968 24.577 hybrid contribution -0.828 -0.917 0.762 1.452 sum -10.952 20.668 -5.205 23.963 Atomic orbital electron populations 1.21081 0.88822 1.04838 1.04447 1.19841 0.97040 0.90063 0.87984 1.21696 0.95232 0.97783 1.11699 1.22884 0.91748 0.95336 0.86160 1.67605 1.38339 0.96503 1.22094 1.17895 0.84097 0.88595 0.86800 1.45186 1.08317 1.04024 1.75319 1.21721 0.76169 0.98866 1.02274 1.21368 0.97279 0.92865 0.99817 1.21966 0.93341 1.00258 1.00590 1.20877 0.97271 0.89691 0.90257 1.44118 1.02638 1.60171 1.24593 1.19217 0.94322 1.07023 1.17649 0.91617 1.25043 0.98091 0.95751 1.00831 1.70038 1.24864 1.20364 1.39340 0.86239 0.79494 0.78199 0.82941 1.20279 1.21545 1.21711 1.20804 0.83292 0.89668 1.01754 1.22260 0.98568 1.00966 0.95677 1.18585 0.93134 0.87131 1.30572 1.39323 0.99505 1.01717 1.00681 1.94635 1.55781 1.66074 1.20171 1.94610 1.56215 1.66141 1.20262 0.88680 0.88905 0.90714 0.83105 0.80883 0.75044 0.90960 0.91302 0.91239 0.91964 0.92870 0.96506 0.92639 0.93644 0.89315 0.96401 0.92372 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.82 36.01 0.35 -0.62 16 2 C 0.06 0.57 5.91 -104.36 -0.62 -0.05 16 3 C -0.24 -1.71 9.81 -39.42 -0.39 -2.10 16 4 C 0.20 1.58 11.17 -17.57 -0.20 1.39 16 5 N -0.53 -6.18 9.57 -12.44 -0.12 -6.30 16 6 C 0.47 6.22 7.48 -155.02 -1.16 5.06 16 7 N -0.70 -9.84 5.40 -60.42 -0.33 -10.16 16 8 C 0.13 1.83 5.08 -4.04 -0.02 1.81 16 9 C -0.09 -1.52 2.19 -90.58 -0.20 -1.72 16 10 C -0.12 -2.02 5.36 -26.61 -0.14 -2.16 16 11 C 0.15 3.01 6.51 -3.71 -0.02 2.98 16 12 N -0.59 -14.82 3.01 -172.09 -0.52 -15.34 16 13 C -0.25 -6.96 9.59 -15.06 -0.14 -7.10 16 14 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 16 N -0.90 -26.42 11.18 55.49 0.62 -25.80 16 17 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C 0.17 4.08 5.33 -3.55 -0.02 4.06 16 22 C -0.14 -2.57 5.25 -26.61 -0.14 -2.71 16 23 C -0.20 -2.54 5.54 -85.89 -0.48 -3.01 16 24 N 0.06 0.90 2.04 31.54 0.06 0.97 16 25 O -0.15 -2.30 19.13 -29.46 -0.56 -2.86 16 26 O -0.16 -2.35 18.97 -29.46 -0.56 -2.91 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.07 0.64 7.40 -51.93 -0.38 0.26 16 30 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 31 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.41 6.07 6.89 -40.82 -0.28 5.79 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.78 7.15 -51.93 -0.37 0.41 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -31.70 363.26 -10.59 -42.29 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.38 Total: 2.03 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.26 Total: -4.21 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.28 Total: -56.63 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -1.12 Total: -5.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.70 -10.59 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301645950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.776 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds