Wall clock time and date at job start Tue Mar 31 2020 12:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38887 * 120.74512 * 2 1 4 4 C 1.38017 * 119.32952 * 179.97438 * 3 2 1 5 5 N 1.31972 * 120.85696 * 359.74559 * 4 3 2 6 6 C 1.32397 * 121.62031 * 0.52509 * 5 4 3 7 7 N 1.39002 * 119.70570 * 179.75320 * 6 5 4 8 8 C 1.46505 * 120.00104 * 359.72659 * 7 6 5 9 9 C 1.52993 * 109.47444 * 179.97438 * 8 7 6 10 10 C 1.53034 * 109.46311 * 174.99679 * 9 8 7 11 11 C 1.53194 * 109.31631 * 181.38607 * 10 9 8 12 12 N 1.46928 * 108.88836 * 305.29172 * 11 10 9 13 13 C 1.36934 * 120.63084 * 233.67060 * 12 11 10 14 14 H 1.07993 * 120.00334 * 27.39912 * 13 12 11 15 15 C 1.38820 * 119.99795 * 207.39526 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.26991 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.26997 * 15 13 12 18 18 H 1.48498 * 109.47115 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46875 * 120.00003 * 17 15 13 20 20 H 1.48497 * 109.47091 * 240.00248 * 17 15 13 21 21 C 1.47211 * 118.55611 * 53.54535 * 12 11 10 22 22 C 1.53045 * 109.45980 * 295.06596 * 9 8 7 23 23 C 1.38288 * 120.74914 * 179.97438 * 2 1 3 24 24 N 1.35504 * 120.45446 * 0.02562 * 23 2 1 25 25 O 1.21801 * 119.99645 * 270.02578 * 24 23 2 26 26 O 1.21802 * 120.00137 * 90.01821 * 24 23 2 27 27 H 1.08998 * 109.47404 * 270.02578 * 1 2 3 28 28 H 1.09000 * 109.47069 * 30.02412 * 1 2 3 29 29 H 1.09001 * 109.46828 * 150.02271 * 1 2 3 30 30 H 1.08004 * 120.33127 * 359.95519 * 3 2 1 31 31 H 1.08010 * 119.57185 * 180.02562 * 4 3 2 32 32 H 0.97002 * 120.00421 * 179.72161 * 7 6 5 33 33 H 1.09001 * 109.47217 * 59.99277 * 8 7 6 34 34 H 1.09000 * 109.46657 * 299.99725 * 8 7 6 35 35 H 1.08998 * 109.44868 * 55.02805 * 9 8 7 36 36 H 1.08997 * 109.49513 * 61.43477 * 10 9 8 37 37 H 1.09004 * 109.49828 * 301.33704 * 10 9 8 38 38 H 1.09000 * 109.58642 * 65.14938 * 11 10 9 39 39 H 1.09000 * 109.58560 * 185.43802 * 11 10 9 40 40 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.53679 * 186.67414 * 21 12 11 42 42 H 1.08996 * 109.68174 * 66.35764 * 21 12 11 43 43 H 1.09000 * 109.49621 * 298.56598 * 22 9 8 44 44 H 1.09003 * 109.49716 * 58.62965 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1937 0.0000 4 6 3.5968 1.1596 0.0005 5 7 4.2455 0.0103 0.0061 6 6 3.6049 -1.1484 0.0010 7 7 4.3282 -2.3354 0.0019 8 6 5.7928 -2.3007 0.0025 9 6 6.3369 -3.7306 0.0042 10 6 7.8617 -3.6962 -0.1210 11 6 8.4000 -5.1301 -0.1539 12 7 7.9107 -5.8490 1.0304 13 6 8.7845 -6.4871 1.8696 14 1 9.8021 -6.1364 1.9580 15 6 8.3624 -7.5849 2.6070 16 7 7.2618 -8.2218 2.2675 17 14 9.3564 -8.1581 4.0811 18 1 10.5412 -7.2792 4.2512 19 1 8.5134 -8.0935 5.3020 20 1 9.8045 -9.5568 3.8623 21 6 6.4627 -5.8654 1.2953 22 6 5.9463 -4.4232 1.3119 23 6 2.2140 -1.1885 0.0005 24 7 1.5613 -2.3759 0.0005 25 8 1.2672 -2.9091 1.0554 26 8 1.2687 -2.9100 -1.0543 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6947 2.1390 -0.0007 31 1 4.1529 2.0855 0.0010 32 1 3.8633 -3.1867 0.0023 33 1 6.1436 -1.7778 0.8923 34 1 6.1442 -1.7789 -0.8877 35 1 5.9157 -4.2802 -0.8376 36 1 8.2850 -3.1682 0.7334 37 1 8.1397 -3.1821 -1.0412 38 1 8.0497 -5.6313 -1.0562 39 1 9.4898 -5.1115 -0.1457 40 1 6.9670 -8.9892 2.7826 41 1 6.2743 -6.3320 2.2621 42 1 5.9527 -6.4271 0.5128 43 1 6.3876 -3.8883 2.1528 44 1 4.8608 -4.4262 1.4118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301645950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:48 Heat of formation + Delta-G solvation = 44.739488 kcal Electronic energy + Delta-G solvation = -27223.603758 eV Core-core repulsion = 23372.346355 eV Total energy + Delta-G solvation = -3851.257403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.26085 -41.43863 -39.74700 -37.75311 -37.46615 -35.49954 -35.04557 -33.17189 -31.74610 -31.56757 -29.62265 -28.54625 -27.32556 -25.78136 -24.09730 -23.78122 -23.28755 -22.33301 -20.91567 -20.49285 -20.14345 -19.70064 -18.80325 -18.36716 -17.16773 -16.86411 -16.35930 -16.26376 -15.74558 -15.71795 -15.36488 -15.26566 -14.89606 -14.56820 -14.34305 -14.05576 -13.96404 -13.92695 -13.55656 -13.28942 -13.13043 -12.91049 -12.90159 -12.61579 -12.52590 -12.37377 -12.32417 -12.01767 -11.94807 -11.70258 -11.56275 -11.26312 -11.18453 -11.09486 -10.92596 -10.58151 -9.25388 -8.72777 -7.90143 -5.35196 -0.86799 -0.53217 0.01182 0.82182 1.43804 1.45647 1.56337 1.65933 2.36057 2.48934 2.98595 3.24332 3.35287 3.46933 3.62187 3.63168 3.72702 3.83358 3.96779 3.99503 4.34330 4.42649 4.43522 4.45799 4.46525 4.57942 4.62829 4.67158 4.82047 4.84721 4.89947 4.94991 5.07440 5.14341 5.18111 5.20094 5.31372 5.33659 5.47777 5.60893 5.66129 5.70346 5.78230 6.27165 6.35872 6.68713 7.11123 7.82864 8.35183 9.16648 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002933 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.676571 B = 9545.408861 C =10188.856906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.048 3.952 3 C -0.216 4.216 4 C 0.198 3.802 5 N -0.543 5.543 6 C 0.450 3.550 7 N -0.716 5.716 8 C 0.151 3.849 9 C -0.085 4.085 10 C -0.109 4.109 11 C 0.139 3.861 12 N -0.611 5.611 13 C -0.261 4.261 14 H 0.069 0.931 15 C -0.055 4.055 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.292 1.292 21 C 0.178 3.822 22 C -0.119 4.119 23 C -0.228 4.228 24 N 0.075 4.925 25 O -0.179 6.179 26 O -0.170 6.170 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.053 0.947 30 H 0.197 0.803 31 H 0.218 0.782 32 H 0.404 0.596 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.012 0.988 39 H 0.058 0.942 40 H 0.249 0.751 41 H 0.051 0.949 42 H -0.007 1.007 43 H 0.052 0.948 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 25.295 -6.499 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 C -0.238 4.238 4 C 0.040 3.960 5 N -0.263 5.263 6 C 0.211 3.789 7 N -0.344 5.344 8 C 0.028 3.972 9 C -0.104 4.104 10 C -0.148 4.148 11 C 0.013 3.987 12 N -0.335 5.335 13 C -0.392 4.392 14 H 0.087 0.913 15 C -0.250 4.250 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.188 1.188 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.052 3.948 22 C -0.158 4.158 23 C -0.324 4.324 24 N 0.596 4.404 25 O -0.393 6.393 26 O -0.386 6.386 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.072 0.928 30 H 0.214 0.786 31 H 0.234 0.766 32 H 0.239 0.761 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.011 0.989 43 H 0.071 0.929 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.941 25.752 -6.417 28.340 hybrid contribution -0.919 -2.057 0.825 2.399 sum -10.860 23.694 -5.592 26.658 Atomic orbital electron populations 1.21168 0.87330 1.05470 1.05060 1.20336 0.98304 0.89699 0.87738 1.22239 0.94997 0.98417 1.08176 1.23733 0.92701 0.95488 0.84119 1.67669 1.38970 0.96927 1.22724 1.18032 0.84155 0.88882 0.87865 1.45122 1.08168 1.04248 1.76896 1.21434 0.76364 0.96561 1.02813 1.21226 0.97298 0.94308 0.97564 1.21815 0.93117 0.97394 1.02499 1.21082 0.97643 0.91624 0.88319 1.44393 1.02630 1.60524 1.25954 1.19573 0.94819 1.06833 1.17924 0.91285 1.25835 0.99376 0.96246 1.03513 1.70201 1.26681 1.20908 1.40479 0.85206 0.78365 0.77562 0.79326 1.18838 1.21832 1.21865 1.20569 0.83299 0.92232 0.98711 1.22000 0.98689 0.97685 0.97437 1.18926 0.93322 0.87149 1.32997 1.39532 0.98757 1.02058 1.00037 1.94619 1.57088 1.67022 1.20527 1.94584 1.56699 1.66823 1.20501 0.87983 0.85501 0.92824 0.78571 0.76585 0.76055 0.91202 0.89807 0.91683 0.91932 0.89162 0.96973 0.92337 0.94179 0.93094 0.98881 0.92945 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.82 71.24 0.70 -0.91 16 2 C 0.05 0.80 5.91 -19.70 -0.12 0.68 16 3 C -0.22 -2.06 9.81 22.37 0.22 -1.84 16 4 C 0.20 2.28 11.17 84.62 0.95 3.23 16 5 N -0.54 -11.30 9.57 -193.26 -1.85 -13.15 16 6 C 0.45 11.50 7.48 133.07 1.00 12.49 16 7 N -0.72 -19.87 5.40 -345.07 -1.86 -21.73 16 8 C 0.15 3.95 5.08 86.38 0.44 4.39 16 9 C -0.08 -2.68 2.19 -10.77 -0.02 -2.70 16 10 C -0.11 -3.42 5.36 30.67 0.16 -3.25 16 11 C 0.14 5.69 6.51 86.36 0.56 6.25 16 12 N -0.61 -31.32 3.01 -698.36 -2.10 -33.42 16 13 C -0.26 -14.66 9.59 84.04 0.81 -13.85 16 14 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 15 C -0.05 -3.13 4.92 84.86 0.42 -2.71 16 16 N -0.94 -57.17 11.18 21.65 0.24 -56.93 16 17 Si 0.97 45.87 29.59 68.60 2.03 47.90 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 C 0.18 8.92 5.33 86.31 0.46 9.38 16 22 C -0.12 -4.62 5.25 30.67 0.16 -4.46 16 23 C -0.23 -5.68 5.54 38.80 0.21 -5.47 16 24 N 0.07 2.18 2.04 -54.11 -0.11 2.07 16 25 O -0.18 -5.78 19.13 18.89 0.36 -5.42 16 26 O -0.17 -5.28 18.97 18.88 0.36 -4.92 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.13 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.05 0.89 7.40 -2.39 -0.02 0.87 16 30 H 0.20 0.09 8.06 -2.91 -0.02 0.06 16 31 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 32 H 0.40 12.24 6.89 -92.71 -0.64 11.60 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 39 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 40 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 41 H 0.05 2.92 6.04 -2.39 -0.01 2.91 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 1.86 7.15 -2.39 -0.02 1.85 16 Total: -1.00 -73.42 363.26 3.39 -70.03 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.38 Total: 14.34 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.94 Total: 1.23 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -5.68 Total: -123.16 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.72 Total: -10.34 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.42 3.39 -70.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301645950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.765 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds