Wall clock time and date at job start Tue Mar 31 2020 12:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38350 * 120.74905 * 2 1 4 4 C 1.39091 * 119.10288 * 180.27151 * 3 2 1 5 5 N 1.38994 * 119.70944 * 179.72467 * 4 3 2 6 6 C 1.46507 * 119.99699 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.47026 * 179.97438 * 6 5 4 8 8 C 1.53044 * 109.46211 * 295.07004 * 7 6 5 9 9 C 1.53190 * 109.31378 * 178.61563 * 8 7 6 10 10 N 1.46927 * 108.77615 * 54.63398 * 9 8 7 11 11 C 1.36932 * 120.63055 * 126.41537 * 10 9 8 12 12 H 1.08003 * 120.00069 * 328.91037 * 11 10 9 13 13 C 1.38809 * 120.00041 * 148.91078 * 11 10 9 14 14 N 1.31621 * 119.99953 * 162.69561 * 13 11 10 15 15 Si 1.86799 * 120.00240 * 342.69542 * 13 11 10 16 16 H 1.48501 * 109.47110 * 89.94116 * 15 13 11 17 17 H 1.48499 * 109.47624 * 209.94322 * 15 13 11 18 18 H 1.48499 * 109.46929 * 329.94580 * 15 13 11 19 19 C 1.46930 * 118.73779 * 306.39041 * 10 9 8 20 20 C 1.53042 * 109.46280 * 175.00027 * 7 6 5 21 21 N 1.32426 * 120.58584 * 359.75116 * 4 3 2 22 22 C 1.31947 * 121.62513 * 359.97426 * 21 4 3 23 23 C 1.38063 * 120.85577 * 0.02562 * 22 21 4 24 24 N 1.48001 * 120.33638 * 179.97438 * 23 22 21 25 25 O 1.21808 * 119.99967 * 143.99830 * 24 23 22 26 26 O 1.21796 * 120.00098 * 323.72248 * 24 23 22 27 27 H 1.09003 * 109.47427 * 264.76623 * 1 2 3 28 28 H 1.08997 * 109.47384 * 24.76775 * 1 2 3 29 29 H 1.09001 * 109.47326 * 144.76837 * 1 2 3 30 30 H 1.08007 * 120.44587 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00359 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47259 * 299.99450 * 6 5 4 33 33 H 1.09002 * 109.47024 * 60.00251 * 6 5 4 34 34 H 1.09003 * 109.46173 * 55.02605 * 7 6 5 35 35 H 1.09004 * 109.49341 * 298.56639 * 8 7 6 36 36 H 1.08997 * 109.49848 * 58.65973 * 8 7 6 37 37 H 1.09003 * 109.58813 * 294.84286 * 9 8 7 38 38 H 1.09000 * 109.70318 * 174.48873 * 9 8 7 39 39 H 0.97009 * 119.99588 * 180.02562 * 14 13 11 40 40 H 1.09004 * 109.58424 * 293.82233 * 19 10 9 41 41 H 1.08995 * 109.70410 * 173.47108 * 19 10 9 42 42 H 1.09004 * 109.49515 * 301.33884 * 20 7 6 43 43 H 1.08999 * 109.49473 * 61.39627 * 20 7 6 44 44 H 1.08001 * 119.56896 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2143 1.1890 0.0000 4 6 3.6046 1.1491 -0.0058 5 7 4.3278 2.3360 -0.0116 6 6 3.6254 3.6217 -0.0112 7 6 4.6468 4.7608 -0.0177 8 6 5.4480 4.7348 1.2861 9 6 6.4926 5.8550 1.2613 10 7 5.8125 7.1301 0.9963 11 6 5.9855 8.2001 1.8331 12 1 6.1677 8.0389 2.8853 13 6 5.9266 9.4921 1.3289 14 7 5.7503 10.5096 2.1450 15 14 6.0977 9.7868 -0.5077 16 1 4.7563 9.7423 -1.1433 17 1 6.7118 11.1187 -0.7404 18 1 6.9610 8.7334 -1.0997 19 6 4.9438 7.2355 -0.1840 20 6 3.9165 6.0999 -0.1429 21 7 4.2454 -0.0098 -0.0062 22 6 3.5970 -1.1590 -0.0008 23 6 2.2168 -1.1932 0.0051 24 7 1.5012 -2.4887 0.0106 25 8 0.4623 -2.6080 0.6353 26 8 1.9484 -3.4341 -0.6136 27 1 -0.3634 -0.0937 1.0234 28 1 -0.3634 0.9331 -0.4305 29 1 -0.3634 -0.8394 -0.5928 30 1 1.6939 2.1354 0.0004 31 1 5.2975 2.3131 -0.0160 32 1 2.9963 3.6924 -0.8984 33 1 3.0044 3.6961 0.8816 34 1 5.3243 4.6363 -0.8624 35 1 4.7744 4.8841 2.1300 36 1 5.9491 3.7721 1.3860 37 1 7.2205 5.6585 0.4740 38 1 7.0007 5.9051 2.2243 39 1 5.7088 11.4124 1.7926 40 1 5.5453 7.1516 -1.0891 41 1 4.4278 8.1955 -0.1760 42 1 3.3276 6.1087 -1.0602 43 1 3.2569 6.2361 0.7141 44 1 4.1532 -2.0848 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301673419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:52 Heat of formation + Delta-G solvation = 51.607859 kcal Electronic energy + Delta-G solvation = -26400.951186 eV Core-core repulsion = 22549.991618 eV Total energy + Delta-G solvation = -3850.959568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -42.43229 -40.86800 -38.68305 -36.75638 -36.43468 -34.64716 -33.46444 -31.63880 -30.79471 -30.40726 -28.62223 -27.56382 -25.84982 -24.25662 -23.35743 -22.96775 -22.10380 -21.40932 -19.64961 -19.36199 -18.99603 -18.17404 -17.63721 -16.96786 -16.84373 -15.60301 -15.52970 -15.23649 -14.91701 -14.60529 -14.28361 -14.13762 -13.87257 -13.55684 -13.46890 -13.36240 -12.99673 -12.82220 -12.76860 -12.26279 -11.96028 -11.74619 -11.60100 -11.41923 -11.24307 -11.04277 -10.96627 -10.79903 -10.65460 -10.29734 -10.28480 -10.24145 -10.01246 -9.83214 -9.58455 -8.72502 -8.52353 -7.04491 -6.04330 -3.45604 -0.20275 0.51086 0.97986 1.22816 2.49606 3.03098 3.21399 3.39211 3.41415 3.79181 3.84664 4.14014 4.21742 4.42559 4.57167 4.71305 4.73193 4.83496 4.93218 4.96453 5.03534 5.05015 5.20482 5.28382 5.35543 5.40867 5.51190 5.56239 5.63038 5.68752 5.88275 6.01228 6.10684 6.17395 6.18257 6.26826 6.29963 6.50054 6.50751 6.53312 6.78859 6.89345 7.36947 7.46953 7.89413 8.24583 8.84172 9.61360 9.99638 11.11660 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.002244 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.695495 B =12477.455904 C =12716.265248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.060 3.940 3 C -0.240 4.240 4 C 0.445 3.555 5 N -0.694 5.694 6 C 0.120 3.880 7 C -0.091 4.091 8 C -0.130 4.130 9 C 0.148 3.852 10 N -0.606 5.606 11 C -0.263 4.263 12 H 0.084 0.916 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.888 3.112 16 H -0.287 1.287 17 H -0.303 1.303 18 H -0.272 1.272 19 C 0.125 3.875 20 C -0.125 4.125 21 N -0.535 5.535 22 C 0.234 3.766 23 C -0.171 4.171 24 N 0.044 4.956 25 O -0.163 6.163 26 O -0.170 6.170 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.414 0.586 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.022 0.978 38 H 0.064 0.936 39 H 0.264 0.736 40 H 0.024 0.976 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -20.266 -6.181 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 C -0.266 4.266 4 C 0.206 3.794 5 N -0.320 5.320 6 C -0.004 4.004 7 C -0.110 4.110 8 C -0.169 4.169 9 C 0.022 3.978 10 N -0.330 5.330 11 C -0.392 4.392 12 H 0.102 0.898 13 C -0.174 4.174 14 N -0.552 5.552 15 Si 0.718 3.282 16 H -0.215 1.215 17 H -0.231 1.231 18 H -0.197 1.197 19 C -0.001 4.001 20 C -0.165 4.165 21 N -0.254 5.254 22 C 0.070 3.930 23 C -0.261 4.261 24 N 0.562 4.438 25 O -0.379 6.379 26 O -0.383 6.383 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.172 0.828 31 H 0.251 0.749 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.928 -19.141 -6.144 21.263 hybrid contribution -0.526 -0.016 -1.033 1.159 sum -7.454 -19.157 -7.177 21.773 Atomic orbital electron populations 1.21059 0.88224 1.04120 1.04910 1.19844 0.97775 0.89726 0.87470 1.21337 0.92592 0.98879 1.13789 1.18710 0.88542 0.86688 0.85412 1.45032 1.09875 1.02141 1.74991 1.21883 0.95820 0.80643 1.02009 1.21310 0.96530 0.93582 0.99581 1.22093 0.99335 0.98953 0.96562 1.20921 0.92279 0.85238 0.99404 1.44334 1.50400 1.09958 1.28284 1.18899 1.45870 0.83569 0.90813 0.89842 1.25387 0.99179 0.95459 0.97418 1.69805 1.51743 0.99029 1.34578 0.86893 0.77669 0.76568 0.87055 1.21500 1.23073 1.19675 1.21349 0.91437 0.97291 0.89987 1.22003 0.98879 0.94274 1.01354 1.67596 1.38466 0.96548 1.22833 1.22299 0.88147 0.96745 0.85776 1.21634 0.93934 0.83689 1.26820 1.43284 1.00274 1.02227 0.98018 1.94522 1.11922 1.89788 1.41643 1.94543 1.70398 1.31496 1.41911 0.88174 0.89882 0.90335 0.82844 0.74878 0.91181 0.90832 0.90790 0.91585 0.92896 0.96056 0.91734 0.92658 0.95777 0.90694 0.92497 0.91243 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.74 36.00 0.31 -0.56 16 2 C 0.06 0.53 5.90 -104.36 -0.62 -0.08 16 3 C -0.24 -2.04 9.01 -39.22 -0.35 -2.40 16 4 C 0.44 4.31 7.65 -155.02 -1.19 3.13 16 5 N -0.69 -6.23 5.44 -60.43 -0.33 -6.55 16 6 C 0.12 1.06 4.28 -4.04 -0.02 1.05 16 7 C -0.09 -1.07 2.19 -90.58 -0.20 -1.27 16 8 C -0.13 -1.75 5.25 -26.61 -0.14 -1.89 16 9 C 0.15 2.62 6.52 -3.71 -0.02 2.59 16 10 N -0.61 -13.33 2.73 -172.32 -0.47 -13.80 16 11 C -0.26 -7.03 10.02 -15.06 -0.15 -7.18 16 12 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 13 C 0.02 0.69 5.27 -17.43 -0.09 0.60 16 14 N -0.91 -27.10 13.97 55.49 0.78 -26.32 16 15 Si 0.89 21.55 24.33 -169.99 -4.14 17.41 16 16 H -0.29 -6.64 6.56 56.52 0.37 -6.27 16 17 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.27 -6.48 6.70 56.52 0.38 -6.10 16 19 C 0.13 2.45 4.19 -3.71 -0.02 2.44 16 20 C -0.13 -1.80 5.36 -26.61 -0.14 -1.95 16 21 N -0.54 -5.56 10.39 -12.44 -0.13 -5.68 16 22 C 0.23 2.24 10.81 -17.57 -0.19 2.05 16 23 C -0.17 -1.74 6.52 -79.80 -0.52 -2.26 16 24 N 0.04 0.51 4.20 34.04 0.14 0.65 16 25 O -0.16 -1.96 16.86 -29.46 -0.50 -2.46 16 26 O -0.17 -2.09 18.93 -29.46 -0.56 -2.65 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 29 H 0.08 0.61 6.99 -51.93 -0.36 0.24 16 30 H 0.15 1.02 6.71 -52.48 -0.35 0.66 16 31 H 0.41 3.67 7.77 -40.82 -0.32 3.35 16 32 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 33 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.02 0.47 7.02 -51.93 -0.36 0.11 16 41 H 0.07 1.65 4.69 -51.93 -0.24 1.40 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.18 1.31 7.99 -52.49 -0.42 0.89 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -30.74 354.31 -9.43 -40.16 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.23 Total: -0.36 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.33 Total: -5.74 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.01 Total: -51.70 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -1.05 Total: -5.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.74 -9.43 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301673419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.772 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds