Wall clock time and date at job start Tue Mar 31 2020 12:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38350 * 120.74905 * 2 1 4 4 C 1.39091 * 119.10288 * 180.27151 * 3 2 1 5 5 N 1.38994 * 119.70944 * 179.72467 * 4 3 2 6 6 C 1.46507 * 119.99699 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.47026 * 179.97438 * 6 5 4 8 8 C 1.53044 * 109.46211 * 295.07004 * 7 6 5 9 9 C 1.53190 * 109.31378 * 178.61563 * 8 7 6 10 10 N 1.46927 * 108.77615 * 54.63398 * 9 8 7 11 11 C 1.36932 * 120.63055 * 126.41537 * 10 9 8 12 12 H 1.08003 * 120.00069 * 328.91037 * 11 10 9 13 13 C 1.38809 * 120.00041 * 148.91078 * 11 10 9 14 14 N 1.31621 * 119.99953 * 162.69561 * 13 11 10 15 15 Si 1.86799 * 120.00240 * 342.69542 * 13 11 10 16 16 H 1.48501 * 109.47110 * 89.94116 * 15 13 11 17 17 H 1.48499 * 109.47624 * 209.94322 * 15 13 11 18 18 H 1.48499 * 109.46929 * 329.94580 * 15 13 11 19 19 C 1.46930 * 118.73779 * 306.39041 * 10 9 8 20 20 C 1.53042 * 109.46280 * 175.00027 * 7 6 5 21 21 N 1.32426 * 120.58584 * 359.75116 * 4 3 2 22 22 C 1.31947 * 121.62513 * 359.97426 * 21 4 3 23 23 C 1.38063 * 120.85577 * 0.02562 * 22 21 4 24 24 N 1.48001 * 120.33638 * 179.97438 * 23 22 21 25 25 O 1.21808 * 119.99967 * 143.99830 * 24 23 22 26 26 O 1.21796 * 120.00098 * 323.72248 * 24 23 22 27 27 H 1.09003 * 109.47427 * 264.76623 * 1 2 3 28 28 H 1.08997 * 109.47384 * 24.76775 * 1 2 3 29 29 H 1.09001 * 109.47326 * 144.76837 * 1 2 3 30 30 H 1.08007 * 120.44587 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00359 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47259 * 299.99450 * 6 5 4 33 33 H 1.09002 * 109.47024 * 60.00251 * 6 5 4 34 34 H 1.09003 * 109.46173 * 55.02605 * 7 6 5 35 35 H 1.09004 * 109.49341 * 298.56639 * 8 7 6 36 36 H 1.08997 * 109.49848 * 58.65973 * 8 7 6 37 37 H 1.09003 * 109.58813 * 294.84286 * 9 8 7 38 38 H 1.09000 * 109.70318 * 174.48873 * 9 8 7 39 39 H 0.97009 * 119.99588 * 180.02562 * 14 13 11 40 40 H 1.09004 * 109.58424 * 293.82233 * 19 10 9 41 41 H 1.08995 * 109.70410 * 173.47108 * 19 10 9 42 42 H 1.09004 * 109.49515 * 301.33884 * 20 7 6 43 43 H 1.08999 * 109.49473 * 61.39627 * 20 7 6 44 44 H 1.08001 * 119.56896 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2143 1.1890 0.0000 4 6 3.6046 1.1491 -0.0058 5 7 4.3278 2.3360 -0.0116 6 6 3.6254 3.6217 -0.0112 7 6 4.6468 4.7608 -0.0177 8 6 5.4480 4.7348 1.2861 9 6 6.4926 5.8550 1.2613 10 7 5.8125 7.1301 0.9963 11 6 5.9855 8.2001 1.8331 12 1 6.1677 8.0389 2.8853 13 6 5.9266 9.4921 1.3289 14 7 5.7503 10.5096 2.1450 15 14 6.0977 9.7868 -0.5077 16 1 4.7563 9.7423 -1.1433 17 1 6.7118 11.1187 -0.7404 18 1 6.9610 8.7334 -1.0997 19 6 4.9438 7.2355 -0.1840 20 6 3.9165 6.0999 -0.1429 21 7 4.2454 -0.0098 -0.0062 22 6 3.5970 -1.1590 -0.0008 23 6 2.2168 -1.1932 0.0051 24 7 1.5012 -2.4887 0.0106 25 8 0.4623 -2.6080 0.6353 26 8 1.9484 -3.4341 -0.6136 27 1 -0.3634 -0.0937 1.0234 28 1 -0.3634 0.9331 -0.4305 29 1 -0.3634 -0.8394 -0.5928 30 1 1.6939 2.1354 0.0004 31 1 5.2975 2.3131 -0.0160 32 1 2.9963 3.6924 -0.8984 33 1 3.0044 3.6961 0.8816 34 1 5.3243 4.6363 -0.8624 35 1 4.7744 4.8841 2.1300 36 1 5.9491 3.7721 1.3860 37 1 7.2205 5.6585 0.4740 38 1 7.0007 5.9051 2.2243 39 1 5.7088 11.4124 1.7926 40 1 5.5453 7.1516 -1.0891 41 1 4.4278 8.1955 -0.1760 42 1 3.3276 6.1087 -1.0602 43 1 3.2569 6.2361 0.7141 44 1 4.1532 -2.0848 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301673419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:51 Heat of formation + Delta-G solvation = 33.183626 kcal Electronic energy + Delta-G solvation = -26401.750121 eV Core-core repulsion = 22549.991618 eV Total energy + Delta-G solvation = -3851.758503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.25318 -41.58613 -39.85176 -37.62699 -37.44774 -35.44567 -34.81358 -33.22513 -31.97156 -31.56273 -29.24881 -28.65112 -26.89970 -25.53994 -24.38650 -24.10878 -22.92727 -22.67293 -20.89956 -20.14753 -19.85040 -19.01524 -18.80527 -18.19992 -17.74241 -17.19818 -16.32560 -15.94795 -15.89718 -15.83186 -15.43319 -15.18311 -14.95336 -14.86089 -14.39845 -14.25757 -14.05189 -13.93239 -13.72729 -13.45204 -13.36677 -13.03345 -12.63548 -12.56975 -12.30455 -12.24348 -12.14577 -12.10536 -11.83820 -11.61171 -11.60007 -11.29352 -11.18359 -10.98567 -10.89181 -10.68927 -9.19751 -8.87673 -8.17887 -5.54092 -1.01373 -0.13884 0.17921 0.44003 1.28159 1.40593 1.49436 1.79871 2.34317 2.40055 3.08258 3.16016 3.22047 3.34318 3.48012 3.54314 3.72008 3.84056 3.94334 4.13409 4.29525 4.38239 4.38974 4.41101 4.52231 4.54516 4.59161 4.61194 4.74050 4.75555 4.87509 4.95087 5.00466 5.01974 5.07589 5.15617 5.20768 5.27943 5.35541 5.52643 5.64530 5.89002 6.12679 6.20045 6.55679 6.68696 6.93768 7.62282 8.02866 9.02369 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.002244 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.695495 B =12477.455904 C =12716.265248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.056 3.944 3 C -0.235 4.235 4 C 0.438 3.562 5 N -0.690 5.690 6 C 0.129 3.871 7 C -0.082 4.082 8 C -0.119 4.119 9 C 0.140 3.860 10 N -0.622 5.622 11 C -0.249 4.249 12 H 0.045 0.955 13 C -0.037 4.037 14 N -0.961 5.961 15 Si 0.954 3.046 16 H -0.267 1.267 17 H -0.315 1.315 18 H -0.262 1.262 19 C 0.115 3.885 20 C -0.117 4.117 21 N -0.550 5.550 22 C 0.233 3.767 23 C -0.183 4.183 24 N 0.047 4.953 25 O -0.171 6.171 26 O -0.192 6.192 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.178 0.822 31 H 0.415 0.585 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.047 0.953 39 H 0.261 0.739 40 H 0.032 0.968 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 -21.711 -8.264 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.260 4.260 4 C 0.199 3.801 5 N -0.317 5.317 6 C 0.006 3.994 7 C -0.101 4.101 8 C -0.158 4.158 9 C 0.015 3.985 10 N -0.347 5.347 11 C -0.379 4.379 12 H 0.063 0.937 13 C -0.232 4.232 14 N -0.607 5.607 15 Si 0.783 3.217 16 H -0.194 1.194 17 H -0.244 1.244 18 H -0.187 1.187 19 C -0.010 4.010 20 C -0.156 4.156 21 N -0.270 5.270 22 C 0.069 3.931 23 C -0.274 4.274 24 N 0.561 4.439 25 O -0.387 6.387 26 O -0.402 6.402 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.195 0.805 31 H 0.252 0.748 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.960 -20.668 -8.263 23.639 hybrid contribution -0.154 0.415 -0.284 0.526 sum -8.114 -20.253 -8.547 23.432 Atomic orbital electron populations 1.21120 0.86941 1.04958 1.05204 1.20124 0.98786 0.89364 0.86913 1.21557 0.92098 0.99547 1.12808 1.18882 0.89135 0.86613 0.85428 1.44979 1.09947 1.01957 1.74778 1.21763 0.94822 0.79240 1.03577 1.21173 0.96945 0.93444 0.98571 1.21941 0.98192 0.98191 0.97429 1.21115 0.93696 0.84850 0.98846 1.44481 1.51890 1.09965 1.28365 1.18823 1.43746 0.85240 0.90089 0.93714 1.26058 1.00009 0.95243 1.01884 1.69954 1.54652 0.99407 1.36707 0.85816 0.78450 0.75700 0.81770 1.19368 1.24402 1.18682 1.21445 0.92247 0.98374 0.88889 1.21861 0.97549 0.93427 1.02794 1.67604 1.38895 0.96961 1.23543 1.22523 0.88113 0.97187 0.85257 1.21801 0.94288 0.83233 1.28060 1.43496 1.00146 1.02658 0.97561 1.94504 1.12420 1.90033 1.41727 1.94534 1.70661 1.32394 1.42600 0.87695 0.87483 0.91416 0.80461 0.74766 0.88799 0.90134 0.89871 0.92826 0.90159 0.94900 0.93459 0.92982 0.95025 0.93389 0.89110 0.92049 0.79343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.74 71.23 0.62 -0.79 16 2 C 0.06 0.85 5.90 -19.70 -0.12 0.73 16 3 C -0.23 -3.08 9.01 22.50 0.20 -2.88 16 4 C 0.44 6.95 7.65 133.05 1.02 7.97 16 5 N -0.69 -9.44 5.44 -345.09 -1.88 -11.32 16 6 C 0.13 1.63 4.28 86.38 0.37 2.00 16 7 C -0.08 -1.59 2.19 -10.77 -0.02 -1.61 16 8 C -0.12 -2.85 5.25 30.67 0.16 -2.69 16 9 C 0.14 4.78 6.52 86.36 0.56 5.34 16 10 N -0.62 -26.97 2.73 -699.10 -1.91 -28.87 16 11 C -0.25 -13.67 10.02 84.03 0.84 -12.83 16 12 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 13 C -0.04 -2.13 5.27 84.86 0.45 -1.68 16 14 N -0.96 -59.47 13.97 21.65 0.30 -59.17 16 15 Si 0.95 44.91 24.33 68.60 1.67 46.58 16 16 H -0.27 -11.59 6.56 99.48 0.65 -10.94 16 17 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 18 H -0.26 -11.76 6.70 99.48 0.67 -11.09 16 19 C 0.12 4.25 4.19 86.36 0.36 4.62 16 20 C -0.12 -2.92 5.36 30.67 0.16 -2.76 16 21 N -0.55 -10.07 10.39 -193.27 -2.01 -12.08 16 22 C 0.23 4.06 10.81 84.63 0.91 4.97 16 23 C -0.18 -3.44 6.52 36.48 0.24 -3.20 16 24 N 0.05 1.05 4.20 -46.23 -0.19 0.86 16 25 O -0.17 -4.00 16.86 18.88 0.32 -3.68 16 26 O -0.19 -4.68 18.93 18.89 0.36 -4.32 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.67 8.07 -2.39 -0.02 0.65 16 29 H 0.07 0.93 6.99 -2.39 -0.02 0.91 16 30 H 0.18 1.41 6.71 -2.91 -0.02 1.39 16 31 H 0.41 5.65 7.77 -92.71 -0.72 4.93 16 32 H 0.09 0.85 7.93 -2.39 -0.02 0.83 16 33 H 0.08 0.98 7.93 -2.39 -0.02 0.97 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 36 H 0.08 1.52 7.15 -2.39 -0.02 1.50 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.73 7.93 -2.39 -0.02 1.72 16 39 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.03 1.13 7.02 -2.38 -0.02 1.12 16 41 H 0.05 2.03 4.69 -2.39 -0.01 2.02 16 42 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.19 2.58 7.99 -2.91 -0.02 2.56 16 Total: -1.00 -69.81 354.31 2.64 -67.17 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.21 Total: 7.64 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.76 Total: -2.82 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -5.68 Total: -110.58 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.68 Total: -8.00 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -69.81 2.64 -67.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301673419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.353 kcal (2) G-P(sol) polarization free energy of solvation -69.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds