Wall clock time and date at job start Tue Mar 31 2020 12:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38338 * 120.45336 * 2 1 4 4 C 1.38840 * 118.50325 * 180.28367 * 3 2 1 5 5 N 1.48006 * 120.33295 * 179.75698 * 4 3 2 6 6 O 1.21801 * 119.99703 * 179.97438 * 5 4 3 7 7 O 1.21796 * 120.00203 * 359.97438 * 5 4 3 8 8 C 1.38065 * 119.32630 * 359.73513 * 4 3 2 9 9 N 1.31932 * 120.85892 * 359.97438 * 8 4 3 10 10 C 1.32430 * 121.62219 * 0.02562 * 9 8 4 11 11 N 1.39007 * 119.70512 * 179.97438 * 10 9 8 12 12 C 1.46507 * 119.99982 * 0.02562 * 11 10 9 13 13 C 1.53002 * 109.47096 * 179.97438 * 12 11 10 14 14 C 1.53031 * 109.46272 * 174.99765 * 13 12 11 15 15 C 1.53189 * 109.31453 * 181.38629 * 14 13 12 16 16 N 1.46923 * 108.89141 * 305.29105 * 15 14 13 17 17 C 1.36942 * 120.62973 * 233.67281 * 16 15 14 18 18 H 1.08009 * 119.99402 * 152.59682 * 17 16 15 19 19 C 1.38805 * 120.00238 * 332.59801 * 17 16 15 20 20 N 1.31625 * 120.00214 * 159.34567 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 339.34781 * 19 17 16 22 22 H 1.48499 * 109.47084 * 92.95592 * 21 19 17 23 23 H 1.48493 * 109.47117 * 212.95272 * 21 19 17 24 24 H 1.48495 * 109.46871 * 332.95714 * 21 19 17 25 25 C 1.47204 * 118.55713 * 53.54081 * 16 15 14 26 26 C 1.53041 * 109.45964 * 295.06543 * 13 12 11 27 27 H 1.09004 * 109.47352 * 270.24834 * 1 2 3 28 28 H 1.09006 * 109.46991 * 30.24453 * 1 2 3 29 29 H 1.08995 * 109.47649 * 150.24170 * 1 2 3 30 30 H 1.07997 * 120.74685 * 0.02562 * 3 2 1 31 31 H 1.08011 * 119.56859 * 180.02562 * 8 4 3 32 32 H 0.97001 * 120.00104 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.47054 * 59.99682 * 12 11 10 34 34 H 1.08997 * 109.46604 * 299.99663 * 12 11 10 35 35 H 1.09006 * 109.45000 * 55.02530 * 13 12 11 36 36 H 1.09002 * 109.49720 * 61.42857 * 14 13 12 37 37 H 1.09000 * 109.49696 * 301.33560 * 14 13 12 38 38 H 1.08997 * 109.58812 * 65.15319 * 15 14 13 39 39 H 1.09002 * 109.58574 * 185.43314 * 15 14 13 40 40 H 0.96996 * 120.00339 * 180.02562 * 20 19 17 41 41 H 1.08991 * 109.53869 * 186.66950 * 25 16 15 42 42 H 1.09004 * 109.67659 * 66.36251 * 25 16 15 43 43 H 1.09001 * 109.49972 * 298.56994 * 26 13 12 44 44 H 1.09007 * 109.49466 * 58.66426 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1925 0.0000 4 6 3.5957 1.1453 -0.0060 5 7 4.3862 2.3966 -0.0117 6 8 5.6032 2.3480 -0.0165 7 8 3.8198 3.4748 -0.0115 8 6 4.2306 -0.0807 -0.0063 9 7 3.5361 -1.2024 -0.0003 10 6 2.2118 -1.1991 0.0056 11 7 1.5200 -2.4048 0.0112 12 6 2.2559 -3.6717 0.0111 13 6 1.2648 -4.8372 0.0185 14 6 2.0289 -6.1571 -0.1073 15 6 1.0315 -7.3195 -0.1344 16 7 0.1702 -7.2350 1.0529 17 6 0.0350 -8.3068 1.8944 18 1 -0.2014 -8.1487 2.9364 19 6 0.2018 -9.5962 1.4084 20 7 0.4777 -10.5813 2.2368 21 14 0.0350 -9.9337 -0.4212 22 1 1.3714 -9.8524 -1.0635 23 1 -0.5301 -11.2917 -0.6246 24 1 -0.8689 -8.9250 -1.0301 25 6 -0.5405 -5.9735 1.3183 26 6 0.4746 -4.8263 1.3291 27 1 -0.3634 0.0045 1.0277 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3634 -0.8921 -0.5100 30 1 1.6879 2.1389 0.0004 31 1 5.3099 -0.1220 -0.0105 32 1 0.5500 -2.4074 0.0159 33 1 2.8863 -3.7256 0.8986 34 1 2.8790 -3.7297 -0.8813 35 1 0.5771 -4.7342 -0.8209 36 1 2.6989 -6.2723 0.7448 37 1 2.6098 -6.1547 -1.0296 38 1 0.4202 -7.2555 -1.0346 39 1 1.5726 -8.2656 -0.1267 40 1 0.5946 -11.4823 1.8972 41 1 -1.0367 -6.0316 2.2870 42 1 -1.2814 -5.7985 0.5382 43 1 1.1591 -4.9540 2.1677 44 1 -0.0509 -3.8765 1.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301772021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:04 Heat of formation + Delta-G solvation = 51.741805 kcal Electronic energy + Delta-G solvation = -26455.920881 eV Core-core repulsion = 22604.967121 eV Total energy + Delta-G solvation = -3850.953760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.36436 -40.98233 -38.60288 -36.71232 -36.35641 -34.42493 -33.64300 -31.93634 -30.92509 -30.45542 -28.03717 -27.47166 -26.02176 -24.33851 -23.33741 -22.65375 -22.27121 -21.38941 -19.65052 -19.19740 -18.95033 -18.41607 -17.68990 -17.15229 -16.83540 -15.65251 -15.61267 -15.09246 -14.68661 -14.45680 -14.23446 -14.00498 -13.81630 -13.73997 -13.43631 -13.40117 -12.97650 -12.77445 -12.67489 -12.22272 -11.93365 -11.74100 -11.57713 -11.47280 -11.30549 -11.08840 -10.95565 -10.77206 -10.64607 -10.35348 -10.25436 -10.23212 -9.97910 -9.80829 -9.52188 -8.71286 -8.44097 -7.08099 -6.02802 -3.39362 -0.33516 0.48483 1.15187 1.23494 2.55207 3.02718 3.24087 3.41095 3.43176 3.73498 3.99381 4.03093 4.13854 4.44648 4.56820 4.71833 4.79078 4.81158 4.90112 5.02440 5.04521 5.14213 5.24027 5.31962 5.37593 5.49017 5.53075 5.62020 5.69690 5.75530 5.90673 6.01819 6.11934 6.18247 6.22971 6.31555 6.43293 6.49477 6.52878 6.56470 6.64634 6.82488 7.40556 7.49509 7.86884 8.24466 8.84859 9.63382 10.00606 11.13098 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.002326 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.241639 B =12037.156319 C =12391.419954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.202 4.202 3 C 0.022 3.978 4 C -0.169 4.169 5 N 0.049 4.951 6 O -0.173 6.173 7 O -0.178 6.178 8 C 0.232 3.768 9 N -0.525 5.525 10 C 0.447 3.553 11 N -0.690 5.690 12 C 0.125 3.875 13 C -0.093 4.093 14 C -0.125 4.125 15 C 0.126 3.874 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.907 5.907 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.272 1.272 25 C 0.148 3.852 26 C -0.129 4.129 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.263 0.737 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.066 0.934 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 22.107 -6.410 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.210 4.210 3 C -0.003 4.003 4 C -0.260 4.260 5 N 0.563 4.437 6 O -0.386 6.386 7 O -0.390 6.390 8 C 0.068 3.932 9 N -0.243 5.243 10 C 0.207 3.793 11 N -0.318 5.318 12 C 0.002 3.998 13 C -0.112 4.112 14 C -0.165 4.165 15 C 0.000 4.000 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.550 5.550 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.197 1.197 25 C 0.022 3.978 26 C -0.169 4.169 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.199 0.801 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.085 0.915 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.675 20.271 -6.355 21.310 hybrid contribution -0.588 0.764 -1.023 1.405 sum 1.087 21.035 -7.378 22.317 Atomic orbital electron populations 1.20651 0.88678 1.03643 1.03292 1.20160 0.98137 0.90747 1.11964 1.21010 0.90685 0.99756 0.88868 1.21825 0.92683 0.85505 1.25983 1.43297 1.01136 1.02304 0.96925 1.94534 0.95608 1.94137 1.54316 1.94520 1.73405 1.16539 1.54511 1.22493 1.01362 0.84172 0.85156 1.67721 1.06020 1.28435 1.22160 1.18645 0.88486 0.86512 0.85703 1.45208 1.09266 1.02891 1.74438 1.21741 0.94666 0.80625 1.02774 1.21345 0.96854 0.93956 0.99091 1.21984 0.98718 0.94304 1.01459 1.21329 0.91745 0.97168 0.89758 1.44404 1.49946 1.11012 1.27575 1.18902 1.45193 0.83556 0.91333 0.89741 1.25287 0.99541 0.95439 0.97310 1.69834 1.49708 1.00882 1.34543 0.86942 0.77731 0.76601 0.87313 1.21598 1.23106 1.19673 1.20945 0.92167 0.85402 0.99303 1.22088 0.99354 0.98598 0.96826 0.90273 0.90324 0.91186 0.82281 0.80060 0.74501 0.90724 0.91081 0.91127 0.91219 0.92459 0.95796 0.90766 0.92690 0.91843 0.96082 0.91518 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 9.58 36.01 0.35 -0.17 16 2 C -0.20 -1.54 5.92 -104.27 -0.62 -2.16 16 3 C 0.02 0.18 9.35 -39.32 -0.37 -0.19 16 4 C -0.17 -1.68 6.87 -79.79 -0.55 -2.22 16 5 N 0.05 0.58 4.45 34.04 0.15 0.73 16 6 O -0.17 -2.17 18.46 -29.46 -0.54 -2.71 16 7 O -0.18 -2.22 18.52 -29.46 -0.55 -2.76 16 8 C 0.23 2.21 10.71 -17.57 -0.19 2.02 16 9 N -0.52 -5.48 9.57 -12.44 -0.12 -5.60 16 10 C 0.45 4.17 7.46 -155.00 -1.16 3.02 16 11 N -0.69 -6.01 5.33 -60.42 -0.32 -6.33 16 12 C 0.12 1.30 5.08 -4.04 -0.02 1.28 16 13 C -0.09 -1.16 2.19 -90.58 -0.20 -1.35 16 14 C -0.12 -1.92 5.36 -26.62 -0.14 -2.06 16 15 C 0.13 2.53 4.20 -3.71 -0.02 2.51 16 16 N -0.61 -13.45 2.78 -172.10 -0.48 -13.93 16 17 C -0.26 -7.04 10.05 -15.06 -0.15 -7.19 16 18 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 19 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 20 N -0.91 -27.20 13.97 55.49 0.78 -26.42 16 21 Si 0.88 21.66 24.35 -169.99 -4.14 17.52 16 22 H -0.29 -6.79 6.62 56.52 0.37 -6.42 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.27 -6.51 6.63 56.52 0.38 -6.13 16 25 C 0.15 2.59 6.53 -3.56 -0.02 2.57 16 26 C -0.13 -1.74 5.25 -26.61 -0.14 -1.88 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 29 H 0.07 0.30 6.57 -51.93 -0.34 -0.04 16 30 H 0.16 1.02 7.69 -52.49 -0.40 0.61 16 31 H 0.18 1.41 7.61 -52.48 -0.40 1.01 16 32 H 0.42 2.92 5.63 -40.82 -0.23 2.69 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.48 7.08 -51.93 -0.37 0.11 16 39 H 0.07 1.68 4.49 -51.93 -0.23 1.44 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.52 7.15 -51.93 -0.37 0.15 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -31.38 355.32 -9.35 -40.74 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.17 Total: -1.34 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.32 Total: -5.25 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.01 Total: -51.55 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -1.09 Total: -5.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.38 -9.35 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301772021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.477 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds