Wall clock time and date at job start Tue Mar 31 2020 12:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38338 * 120.45336 * 2 1 4 4 C 1.38840 * 118.50325 * 180.28367 * 3 2 1 5 5 N 1.48006 * 120.33295 * 179.75698 * 4 3 2 6 6 O 1.21801 * 119.99703 * 179.97438 * 5 4 3 7 7 O 1.21796 * 120.00203 * 359.97438 * 5 4 3 8 8 C 1.38065 * 119.32630 * 359.73513 * 4 3 2 9 9 N 1.31932 * 120.85892 * 359.97438 * 8 4 3 10 10 C 1.32430 * 121.62219 * 0.02562 * 9 8 4 11 11 N 1.39007 * 119.70512 * 179.97438 * 10 9 8 12 12 C 1.46507 * 119.99982 * 0.02562 * 11 10 9 13 13 C 1.53002 * 109.47096 * 179.97438 * 12 11 10 14 14 C 1.53031 * 109.46272 * 174.99765 * 13 12 11 15 15 C 1.53189 * 109.31453 * 181.38629 * 14 13 12 16 16 N 1.46923 * 108.89141 * 305.29105 * 15 14 13 17 17 C 1.36942 * 120.62973 * 233.67281 * 16 15 14 18 18 H 1.08009 * 119.99402 * 152.59682 * 17 16 15 19 19 C 1.38805 * 120.00238 * 332.59801 * 17 16 15 20 20 N 1.31625 * 120.00214 * 159.34567 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 339.34781 * 19 17 16 22 22 H 1.48499 * 109.47084 * 92.95592 * 21 19 17 23 23 H 1.48493 * 109.47117 * 212.95272 * 21 19 17 24 24 H 1.48495 * 109.46871 * 332.95714 * 21 19 17 25 25 C 1.47204 * 118.55713 * 53.54081 * 16 15 14 26 26 C 1.53041 * 109.45964 * 295.06543 * 13 12 11 27 27 H 1.09004 * 109.47352 * 270.24834 * 1 2 3 28 28 H 1.09006 * 109.46991 * 30.24453 * 1 2 3 29 29 H 1.08995 * 109.47649 * 150.24170 * 1 2 3 30 30 H 1.07997 * 120.74685 * 0.02562 * 3 2 1 31 31 H 1.08011 * 119.56859 * 180.02562 * 8 4 3 32 32 H 0.97001 * 120.00104 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.47054 * 59.99682 * 12 11 10 34 34 H 1.08997 * 109.46604 * 299.99663 * 12 11 10 35 35 H 1.09006 * 109.45000 * 55.02530 * 13 12 11 36 36 H 1.09002 * 109.49720 * 61.42857 * 14 13 12 37 37 H 1.09000 * 109.49696 * 301.33560 * 14 13 12 38 38 H 1.08997 * 109.58812 * 65.15319 * 15 14 13 39 39 H 1.09002 * 109.58574 * 185.43314 * 15 14 13 40 40 H 0.96996 * 120.00339 * 180.02562 * 20 19 17 41 41 H 1.08991 * 109.53869 * 186.66950 * 25 16 15 42 42 H 1.09004 * 109.67659 * 66.36251 * 25 16 15 43 43 H 1.09001 * 109.49972 * 298.56994 * 26 13 12 44 44 H 1.09007 * 109.49466 * 58.66426 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1925 0.0000 4 6 3.5957 1.1453 -0.0060 5 7 4.3862 2.3966 -0.0117 6 8 5.6032 2.3480 -0.0165 7 8 3.8198 3.4748 -0.0115 8 6 4.2306 -0.0807 -0.0063 9 7 3.5361 -1.2024 -0.0003 10 6 2.2118 -1.1991 0.0056 11 7 1.5200 -2.4048 0.0112 12 6 2.2559 -3.6717 0.0111 13 6 1.2648 -4.8372 0.0185 14 6 2.0289 -6.1571 -0.1073 15 6 1.0315 -7.3195 -0.1344 16 7 0.1702 -7.2350 1.0529 17 6 0.0350 -8.3068 1.8944 18 1 -0.2014 -8.1487 2.9364 19 6 0.2018 -9.5962 1.4084 20 7 0.4777 -10.5813 2.2368 21 14 0.0350 -9.9337 -0.4212 22 1 1.3714 -9.8524 -1.0635 23 1 -0.5301 -11.2917 -0.6246 24 1 -0.8689 -8.9250 -1.0301 25 6 -0.5405 -5.9735 1.3183 26 6 0.4746 -4.8263 1.3291 27 1 -0.3634 0.0045 1.0277 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3634 -0.8921 -0.5100 30 1 1.6879 2.1389 0.0004 31 1 5.3099 -0.1220 -0.0105 32 1 0.5500 -2.4074 0.0159 33 1 2.8863 -3.7256 0.8986 34 1 2.8790 -3.7297 -0.8813 35 1 0.5771 -4.7342 -0.8209 36 1 2.6989 -6.2723 0.7448 37 1 2.6098 -6.1547 -1.0296 38 1 0.4202 -7.2555 -1.0346 39 1 1.5726 -8.2656 -0.1267 40 1 0.5946 -11.4823 1.8972 41 1 -1.0367 -6.0316 2.2870 42 1 -1.2814 -5.7985 0.5382 43 1 1.1591 -4.9540 2.1677 44 1 -0.0509 -3.8765 1.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301772021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:03 Heat of formation + Delta-G solvation = 33.107544 kcal Electronic energy + Delta-G solvation = -26456.728923 eV Core-core repulsion = 22604.967121 eV Total energy + Delta-G solvation = -3851.761802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.19934 -41.69686 -39.83048 -37.60589 -37.38409 -35.24091 -34.85036 -33.42563 -32.13380 -31.80796 -28.72921 -28.49447 -26.99174 -25.71202 -24.50488 -23.74981 -23.06914 -22.67412 -20.92373 -19.97073 -19.80218 -19.25868 -18.65225 -18.54523 -17.86764 -17.21688 -16.37777 -16.10091 -15.92639 -15.46463 -15.36577 -15.14491 -14.94772 -14.59194 -14.42578 -14.32813 -14.08566 -13.86295 -13.72200 -13.42765 -13.16856 -12.97140 -12.66114 -12.56361 -12.32415 -12.25960 -12.24563 -12.16167 -11.91071 -11.66706 -11.60419 -11.29031 -11.19976 -10.95068 -10.92879 -10.68570 -9.11933 -8.93260 -8.17434 -5.48744 -1.15479 -0.13910 0.34128 0.44229 1.29051 1.40421 1.49456 1.85309 2.34527 2.40749 3.05318 3.07079 3.33037 3.35806 3.41430 3.54220 3.76583 3.84637 3.92033 4.08689 4.23478 4.37020 4.41402 4.51500 4.54178 4.62172 4.64338 4.73672 4.74947 4.79182 4.87204 4.91138 5.00328 5.07116 5.15745 5.19509 5.21617 5.27120 5.32989 5.54518 5.72955 5.86441 5.98582 6.11876 6.56150 6.75694 6.92390 7.63074 8.02791 9.02652 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.002326 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.241639 B =12037.156319 C =12391.419954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.189 4.189 3 C 0.019 3.981 4 C -0.176 4.176 5 N 0.051 4.949 6 O -0.196 6.196 7 O -0.191 6.191 8 C 0.229 3.771 9 N -0.544 5.544 10 C 0.437 3.563 11 N -0.682 5.682 12 C 0.139 3.861 13 C -0.082 4.082 14 C -0.119 4.119 15 C 0.118 3.882 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.048 0.952 19 C -0.040 4.040 20 N -0.960 5.960 21 Si 0.950 3.050 22 H -0.274 1.274 23 H -0.315 1.315 24 H -0.258 1.258 25 C 0.140 3.860 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.177 0.823 31 H 0.191 0.809 32 H 0.426 0.574 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.261 0.739 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 24.400 -8.527 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.196 4.196 3 C -0.006 4.006 4 C -0.268 4.268 5 N 0.561 4.439 6 O -0.405 6.405 7 O -0.401 6.401 8 C 0.065 3.935 9 N -0.263 5.263 10 C 0.197 3.803 11 N -0.312 5.312 12 C 0.016 3.984 13 C -0.101 4.101 14 C -0.158 4.158 15 C -0.007 4.007 16 N -0.347 5.347 17 C -0.377 4.377 18 H 0.066 0.934 19 C -0.234 4.234 20 N -0.606 5.606 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.244 1.244 24 H -0.182 1.182 25 C 0.016 3.984 26 C -0.157 4.157 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.194 0.806 31 H 0.208 0.792 32 H 0.268 0.732 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.621 22.649 -8.497 24.198 hybrid contribution -0.314 0.088 -0.274 0.426 sum 0.307 22.737 -8.771 24.372 Atomic orbital electron populations 1.20786 0.86352 1.04975 1.04316 1.20412 0.99579 0.89605 1.10052 1.21281 0.89945 1.00881 0.88499 1.21963 0.93317 0.84535 1.26945 1.43560 1.01120 1.02809 0.96437 1.94524 0.96297 1.94355 1.55309 1.94499 1.73306 1.17412 1.54902 1.22638 1.01918 0.83951 0.84947 1.67711 1.06902 1.28743 1.22917 1.18863 0.88398 0.87200 0.85799 1.45035 1.09641 1.02071 1.74438 1.21415 0.93941 0.80585 1.02495 1.21207 0.96984 0.93011 0.98920 1.21859 0.97701 0.94081 1.02205 1.21401 0.92335 0.97892 0.89043 1.44564 1.51402 1.11202 1.27564 1.18850 1.42904 0.85215 0.90708 0.93403 1.25953 1.00434 0.95351 1.01697 1.69979 1.52665 1.01274 1.36706 0.85856 0.78331 0.75808 0.82074 1.20118 1.24382 1.18173 1.21181 0.93397 0.84651 0.99214 1.21953 0.98283 0.98533 0.96924 0.89260 0.88854 0.90080 0.80554 0.79195 0.73250 0.91913 0.90661 0.89250 0.92836 0.89802 0.94588 0.93721 0.93043 0.93184 0.94111 0.93449 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.58 71.24 0.68 0.12 16 2 C -0.19 -2.20 5.92 -19.63 -0.12 -2.32 16 3 C 0.02 0.26 9.35 22.44 0.21 0.47 16 4 C -0.18 -3.22 6.87 36.48 0.25 -2.97 16 5 N 0.05 1.17 4.45 -46.22 -0.21 0.97 16 6 O -0.20 -4.88 18.46 18.89 0.35 -4.53 16 7 O -0.19 -4.60 18.52 18.89 0.35 -4.25 16 8 C 0.23 4.03 10.71 84.64 0.91 4.94 16 9 N -0.54 -10.15 9.57 -193.26 -1.85 -12.00 16 10 C 0.44 6.74 7.46 133.04 0.99 7.73 16 11 N -0.68 -9.06 5.33 -345.07 -1.84 -10.90 16 12 C 0.14 2.40 5.08 86.38 0.44 2.84 16 13 C -0.08 -1.72 2.19 -10.77 -0.02 -1.74 16 14 C -0.12 -3.34 5.36 30.67 0.16 -3.18 16 15 C 0.12 4.52 4.20 86.36 0.36 4.88 16 16 N -0.62 -27.16 2.78 -698.40 -1.94 -29.10 16 17 C -0.25 -13.62 10.05 84.03 0.84 -12.77 16 18 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 19 C -0.04 -2.29 5.23 84.86 0.44 -1.85 16 20 N -0.96 -59.87 13.97 21.65 0.30 -59.56 16 21 Si 0.95 45.27 24.35 68.60 1.67 46.94 16 22 H -0.27 -12.31 6.62 99.48 0.66 -11.65 16 23 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 24 H -0.26 -11.49 6.63 99.48 0.66 -10.83 16 25 C 0.14 4.63 6.53 86.31 0.56 5.19 16 26 C -0.12 -2.81 5.25 30.67 0.16 -2.65 16 27 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.09 0.27 8.10 -2.38 -0.02 0.25 16 29 H 0.08 0.28 6.57 -2.39 -0.02 0.26 16 30 H 0.18 1.73 7.69 -2.91 -0.02 1.71 16 31 H 0.19 2.81 7.61 -2.90 -0.02 2.79 16 32 H 0.43 3.80 5.63 -92.71 -0.52 3.27 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.31 7.08 -2.39 -0.02 1.29 16 39 H 0.04 1.97 4.49 -2.39 -0.01 1.96 16 40 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.05 1.76 7.94 -2.39 -0.02 1.74 16 42 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.45 7.15 -2.38 -0.02 1.44 16 Total: -1.00 -71.19 355.32 3.13 -68.06 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.41 Total: 5.67 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.88 Total: -1.29 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -5.53 Total: -110.59 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.70 Total: -8.79 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -71.19 3.13 -68.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301772021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.170 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds