Wall clock time and date at job start Tue Mar 31 2020 12:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47058 * 270.00044 * 3 2 1 5 5 H 1.48502 * 109.47110 * 29.99890 * 3 2 1 6 6 H 1.48497 * 109.47051 * 149.99616 * 3 2 1 7 7 C 1.37875 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99230 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00430 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47493 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00178 * 89.99755 * 10 9 7 12 12 C 1.52992 * 109.47269 * 95.38045 * 11 10 9 13 13 C 1.53000 * 117.49834 * 243.62296 * 12 11 10 14 14 C 1.53001 * 60.00039 * 252.50913 * 13 12 11 15 15 C 1.34782 * 119.99490 * 270.00038 * 10 9 7 16 16 O 1.21594 * 120.00311 * 5.21238 * 15 10 9 17 17 C 1.47525 * 119.99336 * 185.21195 * 15 10 9 18 18 C 1.36598 * 125.76675 * 185.58256 * 17 15 10 19 19 N 1.34816 * 106.83702 * 179.90024 * 18 17 15 20 20 C 1.46500 * 126.59120 * 180.10851 * 19 18 17 21 21 H 1.09001 * 110.45543 * 207.87651 * 20 19 18 22 22 C 1.54514 * 110.51386 * 85.27223 * 20 19 18 23 23 C 1.54473 * 104.06115 * 241.35424 * 22 20 19 24 24 O 1.44423 * 104.80762 * 23.97878 * 23 22 20 25 25 C 1.44428 * 105.27092 * 319.48635 * 24 23 22 26 26 N 1.40210 * 106.81177 * 0.35810 * 19 18 17 27 27 N 1.28754 * 108.36753 * 359.77145 * 26 19 18 28 28 H 0.97002 * 119.99741 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47303 * 59.99322 * 9 7 2 30 30 H 1.09000 * 109.47208 * 299.99666 * 9 7 2 31 31 H 1.09004 * 109.46933 * 335.37875 * 11 10 9 32 32 H 1.09005 * 109.46867 * 215.38197 * 11 10 9 33 33 H 1.09004 * 115.55358 * 29.33055 * 12 11 10 34 34 H 1.08994 * 117.50262 * 359.97438 * 13 12 11 35 35 H 1.09006 * 117.49969 * 145.02204 * 13 12 11 36 36 H 1.08999 * 117.49999 * 252.51094 * 14 13 12 37 37 H 1.09002 * 117.50064 * 107.48938 * 14 13 12 38 38 H 1.08004 * 126.58171 * 0.03549 * 18 17 15 39 39 H 1.08996 * 110.50522 * 0.02562 * 22 20 19 40 40 H 1.08999 * 110.50784 * 122.56882 * 22 20 19 41 41 H 1.09000 * 110.37238 * 142.80901 * 23 22 20 42 42 H 1.09003 * 110.37200 * 265.03143 * 23 22 20 43 43 H 1.08994 * 110.37198 * 281.67566 * 25 24 23 44 44 H 1.09004 * 110.36744 * 159.34499 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2692 12 6 1.8293 -5.3854 1.6433 13 6 0.9953 -5.2978 2.9230 14 6 2.2430 -6.1823 2.8822 15 6 2.6408 -4.1249 -1.1668 16 8 2.3209 -3.6034 -2.2176 17 6 3.5082 -5.3182 -1.1694 18 6 4.1042 -5.8696 -2.2678 19 7 4.8059 -6.9370 -1.8369 20 6 5.6131 -7.8415 -2.6595 21 1 5.6571 -8.8317 -2.2060 22 6 7.0359 -7.2715 -2.8542 23 6 7.1565 -7.0772 -4.3820 24 8 5.7951 -6.9488 -4.8463 25 6 5.0425 -7.9242 -4.0926 26 7 4.6098 -7.0185 -0.4509 27 7 3.8410 -6.0500 -0.0923 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.5968 -3.4143 2.0510 32 1 3.7209 -4.4724 1.1648 33 1 1.4085 -5.9409 0.8051 34 1 1.0523 -4.3740 3.4987 35 1 0.0255 -5.7954 2.9269 36 1 2.0942 -7.2618 2.8591 37 1 3.1207 -5.8402 3.4306 38 1 4.0295 -5.5168 -3.2859 39 1 7.1389 -6.3170 -2.3381 40 1 7.7833 -7.9799 -2.4970 41 1 7.7208 -6.1719 -4.6060 42 1 7.6347 -7.9441 -4.8381 43 1 5.1945 -8.9217 -4.5047 44 1 3.9826 -7.6695 -4.0943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330056870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:17 Heat of formation + Delta-G solvation = 62.166619 kcal Electronic energy + Delta-G solvation = -27456.526494 eV Core-core repulsion = 23606.024788 eV Total energy + Delta-G solvation = -3850.501706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18031 -39.86202 -38.68085 -36.90671 -34.68720 -34.27500 -32.46688 -31.52648 -30.58261 -29.29903 -27.72962 -26.01435 -24.48987 -23.43572 -22.99010 -22.00496 -21.81146 -20.95564 -20.46975 -19.13419 -17.57083 -16.88479 -16.42329 -16.39420 -15.97121 -15.80341 -15.57714 -15.04259 -14.71079 -14.41596 -14.26037 -14.05999 -13.42462 -13.33634 -12.94916 -12.82546 -12.41943 -12.26720 -12.15636 -12.11373 -11.77263 -11.72508 -11.26034 -11.15926 -11.09463 -10.88696 -10.73063 -10.56390 -10.51923 -10.16219 -10.15129 -9.93667 -9.53342 -9.38199 -9.10935 -9.00497 -8.36170 -7.57644 -5.97255 -4.01287 1.25125 1.94770 2.11277 3.25311 3.36509 3.42040 3.44909 3.79225 3.87823 3.96779 4.00670 4.30666 4.32642 4.37378 4.50963 4.51781 4.57575 4.79241 4.97610 5.02509 5.12467 5.19752 5.20947 5.28720 5.36822 5.39891 5.40057 5.45834 5.56039 5.89385 5.96072 6.00779 6.11760 6.24396 6.30204 6.38657 6.43723 6.51255 6.78634 7.17258 7.50285 7.62541 7.98810 8.12988 8.30616 8.48487 8.94793 9.11591 9.63136 11.10812 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003916 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.686055 B = 7147.797467 C = 8739.397126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.577 5.577 11 C 0.146 3.854 12 C -0.136 4.136 13 C -0.188 4.188 14 C -0.170 4.170 15 C 0.586 3.414 16 O -0.537 6.537 17 C -0.087 4.087 18 C 0.089 3.911 19 N -0.364 5.364 20 C 0.119 3.881 21 H 0.127 0.873 22 C -0.166 4.166 23 C 0.044 3.956 24 O -0.364 6.364 25 C 0.034 3.966 26 N -0.081 5.081 27 N -0.187 5.187 28 H 0.262 0.738 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.201 0.799 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.907 -19.808 -3.817 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.306 5.306 11 C 0.022 3.978 12 C -0.156 4.156 13 C -0.225 4.225 14 C -0.207 4.207 15 C 0.370 3.630 16 O -0.414 6.414 17 C -0.226 4.226 18 C -0.067 4.067 19 N -0.150 5.150 20 C 0.016 3.984 21 H 0.145 0.855 22 C -0.205 4.205 23 C -0.033 4.033 24 O -0.282 6.282 25 C -0.044 4.044 26 N -0.060 5.060 27 N -0.061 5.061 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.218 0.782 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.817 -20.013 -3.259 23.988 hybrid contribution 0.412 1.137 -0.710 1.403 sum 13.229 -18.876 -3.970 23.389 Atomic orbital electron populations 1.69939 1.05943 1.26892 1.50659 1.24913 0.94852 0.99097 0.95163 0.86516 0.79687 0.83150 0.78173 1.20584 1.21205 1.19962 1.21439 0.93395 0.90615 1.50773 0.92425 1.19338 0.87204 0.81926 0.98597 1.48039 1.44480 1.34071 1.03976 1.21163 0.97300 0.92900 0.86438 1.22537 1.01904 0.99572 0.91541 1.23066 0.95196 1.01964 1.02247 1.22751 0.98477 0.97296 1.02192 1.16798 0.80003 0.81355 0.84841 1.90786 1.58505 1.60949 1.31147 1.21953 1.08784 1.02719 0.89103 1.23329 0.93184 0.88339 1.01800 1.50462 1.34757 1.21162 1.08651 1.22919 0.90234 0.93730 0.91490 0.85520 1.23464 0.95129 1.03758 0.98164 1.23518 0.84845 1.03121 0.91824 1.89263 1.19289 1.57720 1.61912 1.23886 0.98408 0.94739 0.87404 1.81963 1.17938 1.18413 0.87676 1.74944 1.06153 1.00453 1.24567 0.92793 0.93921 0.94514 0.90314 0.89906 0.88728 0.88767 0.89605 0.89698 0.89164 0.78201 0.89215 0.88374 0.88124 0.91302 0.89265 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 6.66 5.10 -5.20 -0.03 6.64 16 10 N -0.58 -13.09 2.47 -176.30 -0.44 -13.52 16 11 C 0.15 2.77 5.25 -4.05 -0.02 2.75 16 12 C -0.14 -2.27 4.39 -90.62 -0.40 -2.67 16 13 C -0.19 -2.81 10.18 -26.73 -0.27 -3.08 16 14 C -0.17 -2.35 10.25 -26.73 -0.27 -2.63 16 15 C 0.59 13.07 7.62 -12.47 -0.10 12.98 16 16 O -0.54 -13.73 16.50 5.28 0.09 -13.65 16 17 C -0.09 -1.55 6.59 -83.55 -0.55 -2.10 16 18 C 0.09 1.27 10.05 -16.83 -0.17 1.10 16 19 N -0.36 -4.31 3.53 -53.04 -0.19 -4.50 16 20 C 0.12 0.87 4.28 -66.36 -0.28 0.59 16 21 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.17 -1.03 6.88 -25.16 -0.17 -1.20 16 23 C 0.04 0.26 7.63 37.93 0.29 0.55 16 24 O -0.36 -3.20 11.65 -35.23 -0.41 -3.61 16 25 C 0.03 0.22 6.64 37.93 0.25 0.48 16 26 N -0.08 -1.17 13.78 60.35 0.83 -0.34 16 27 N -0.19 -3.11 7.71 32.85 0.25 -2.86 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 30 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 31 H 0.08 1.52 7.76 -51.93 -0.40 1.12 16 32 H 0.08 1.52 5.89 -51.93 -0.31 1.22 16 33 H 0.09 1.70 8.00 -51.93 -0.42 1.28 16 34 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.20 2.62 7.77 -52.48 -0.41 2.21 16 39 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 0.79 7.30 -51.93 -0.38 0.41 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -34.62 369.04 -7.20 -41.83 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.48 Total: 0.42 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.14 Total: -0.38 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 1.20 Total: -47.37 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.32 Total: -17.25 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.62 -7.20 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330056870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.995 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds