Wall clock time and date at job start Tue Mar 31 2020 12:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47058 * 270.00044 * 3 2 1 5 5 H 1.48502 * 109.47110 * 29.99890 * 3 2 1 6 6 H 1.48497 * 109.47051 * 149.99616 * 3 2 1 7 7 C 1.37875 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99230 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00430 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47493 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00178 * 89.99755 * 10 9 7 12 12 C 1.52992 * 109.47269 * 95.38045 * 11 10 9 13 13 C 1.53000 * 117.49834 * 243.62296 * 12 11 10 14 14 C 1.53001 * 60.00039 * 252.50913 * 13 12 11 15 15 C 1.34782 * 119.99490 * 270.00038 * 10 9 7 16 16 O 1.21594 * 120.00311 * 5.21238 * 15 10 9 17 17 C 1.47525 * 119.99336 * 185.21195 * 15 10 9 18 18 C 1.36598 * 125.76675 * 185.58256 * 17 15 10 19 19 N 1.34816 * 106.83702 * 179.90024 * 18 17 15 20 20 C 1.46500 * 126.59120 * 180.10851 * 19 18 17 21 21 H 1.09001 * 110.45543 * 207.87651 * 20 19 18 22 22 C 1.54514 * 110.51386 * 85.27223 * 20 19 18 23 23 C 1.54473 * 104.06115 * 241.35424 * 22 20 19 24 24 O 1.44423 * 104.80762 * 23.97878 * 23 22 20 25 25 C 1.44428 * 105.27092 * 319.48635 * 24 23 22 26 26 N 1.40210 * 106.81177 * 0.35810 * 19 18 17 27 27 N 1.28754 * 108.36753 * 359.77145 * 26 19 18 28 28 H 0.97002 * 119.99741 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47303 * 59.99322 * 9 7 2 30 30 H 1.09000 * 109.47208 * 299.99666 * 9 7 2 31 31 H 1.09004 * 109.46933 * 335.37875 * 11 10 9 32 32 H 1.09005 * 109.46867 * 215.38197 * 11 10 9 33 33 H 1.09004 * 115.55358 * 29.33055 * 12 11 10 34 34 H 1.08994 * 117.50262 * 359.97438 * 13 12 11 35 35 H 1.09006 * 117.49969 * 145.02204 * 13 12 11 36 36 H 1.08999 * 117.49999 * 252.51094 * 14 13 12 37 37 H 1.09002 * 117.50064 * 107.48938 * 14 13 12 38 38 H 1.08004 * 126.58171 * 0.03549 * 18 17 15 39 39 H 1.08996 * 110.50522 * 0.02562 * 22 20 19 40 40 H 1.08999 * 110.50784 * 122.56882 * 22 20 19 41 41 H 1.09000 * 110.37238 * 142.80901 * 23 22 20 42 42 H 1.09003 * 110.37200 * 265.03143 * 23 22 20 43 43 H 1.08994 * 110.37198 * 281.67566 * 25 24 23 44 44 H 1.09004 * 110.36744 * 159.34499 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2692 12 6 1.8293 -5.3854 1.6433 13 6 0.9953 -5.2978 2.9230 14 6 2.2430 -6.1823 2.8822 15 6 2.6408 -4.1249 -1.1668 16 8 2.3209 -3.6034 -2.2176 17 6 3.5082 -5.3182 -1.1694 18 6 4.1042 -5.8696 -2.2678 19 7 4.8059 -6.9370 -1.8369 20 6 5.6131 -7.8415 -2.6595 21 1 5.6571 -8.8317 -2.2060 22 6 7.0359 -7.2715 -2.8542 23 6 7.1565 -7.0772 -4.3820 24 8 5.7951 -6.9488 -4.8463 25 6 5.0425 -7.9242 -4.0926 26 7 4.6098 -7.0185 -0.4509 27 7 3.8410 -6.0500 -0.0923 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.5968 -3.4143 2.0510 32 1 3.7209 -4.4724 1.1648 33 1 1.4085 -5.9409 0.8051 34 1 1.0523 -4.3740 3.4987 35 1 0.0255 -5.7954 2.9269 36 1 2.0942 -7.2618 2.8591 37 1 3.1207 -5.8402 3.4306 38 1 4.0295 -5.5168 -3.2859 39 1 7.1389 -6.3170 -2.3381 40 1 7.7833 -7.9799 -2.4970 41 1 7.7208 -6.1719 -4.6060 42 1 7.6347 -7.9441 -4.8381 43 1 5.1945 -8.9217 -4.5047 44 1 3.9826 -7.6695 -4.0943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330056870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:16 Heat of formation + Delta-G solvation = 38.791966 kcal Electronic energy + Delta-G solvation = -27457.540095 eV Core-core repulsion = 23606.024788 eV Total energy + Delta-G solvation = -3851.515307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.34608 -40.70205 -40.17051 -38.33971 -36.14834 -35.56108 -34.55306 -32.36420 -31.84197 -30.05558 -29.52749 -27.66365 -25.89220 -24.77021 -23.75232 -23.35702 -23.08927 -21.88002 -21.83594 -20.50738 -18.83377 -18.58091 -17.63967 -17.34705 -17.21688 -17.04264 -16.66883 -16.34836 -16.13370 -15.79118 -15.68302 -15.40138 -14.77908 -14.55313 -14.25877 -13.94967 -13.84610 -13.60236 -13.38735 -13.28046 -12.94340 -12.81086 -12.63175 -12.54762 -12.51855 -12.26571 -12.24258 -12.21572 -11.91991 -11.69100 -11.44991 -11.21493 -10.96176 -10.81874 -10.64761 -10.58970 -10.31301 -9.45159 -8.20087 -6.34614 0.10051 0.70556 0.99599 1.37955 1.41014 1.50924 2.18618 2.32698 2.43603 2.75996 3.06669 3.10084 3.17073 3.27407 3.37079 3.60159 3.79156 3.91188 3.97310 3.99994 4.12468 4.14085 4.25406 4.31691 4.39201 4.51766 4.55502 4.61599 4.75007 4.78660 4.81646 4.87513 4.90795 4.96030 5.08106 5.11058 5.22468 5.36013 5.38450 5.41993 5.59580 5.68838 5.84374 6.07285 6.62861 6.73887 6.92517 7.24407 7.40071 8.87270 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003916 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.686055 B = 7147.797467 C = 8739.397126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.266 3.734 10 N -0.584 5.584 11 C 0.152 3.848 12 C -0.154 4.154 13 C -0.189 4.189 14 C -0.139 4.139 15 C 0.582 3.418 16 O -0.583 6.583 17 C -0.115 4.115 18 C 0.107 3.893 19 N -0.343 5.343 20 C 0.107 3.893 21 H 0.158 0.842 22 C -0.160 4.160 23 C 0.042 3.958 24 O -0.395 6.395 25 C 0.035 3.965 26 N -0.076 5.076 27 N -0.196 5.196 28 H 0.268 0.732 29 H 0.002 0.998 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.210 0.790 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.307 -21.793 -3.514 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.068 0.932 9 C 0.146 3.854 10 N -0.312 5.312 11 C 0.029 3.971 12 C -0.174 4.174 13 C -0.226 4.226 14 C -0.177 4.177 15 C 0.368 3.632 16 O -0.464 6.464 17 C -0.253 4.253 18 C -0.050 4.050 19 N -0.128 5.128 20 C 0.007 3.993 21 H 0.176 0.824 22 C -0.199 4.199 23 C -0.035 4.035 24 O -0.314 6.314 25 C -0.043 4.043 26 N -0.056 5.056 27 N -0.070 5.070 28 H 0.077 0.923 29 H 0.020 0.980 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.227 0.773 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.254 -22.054 -2.930 26.975 hybrid contribution -0.279 1.627 -0.876 1.869 sum 14.975 -20.428 -3.806 25.613 Atomic orbital electron populations 1.70053 1.07472 1.28167 1.50886 1.25817 0.95798 1.02853 0.94324 0.85427 0.78714 0.78451 0.78283 1.20397 1.19770 1.18923 1.21659 0.93151 0.91901 1.51455 0.93150 1.18798 0.87481 0.83180 0.95969 1.48006 1.43963 1.33406 1.05840 1.21244 0.98113 0.93385 0.84374 1.22292 1.03375 0.99490 0.92213 1.23135 0.96315 1.02445 1.00707 1.22825 0.98009 0.97904 0.98942 1.17315 0.79797 0.82190 0.83850 1.90735 1.60377 1.62756 1.32499 1.21319 1.10465 1.02499 0.91061 1.23329 0.92173 0.88305 1.01237 1.50769 1.33571 1.20471 1.08022 1.23556 0.90196 0.94031 0.91531 0.82442 1.23475 0.94913 1.03227 0.98264 1.23692 0.83807 1.04336 0.91618 1.89239 1.20823 1.58793 1.62536 1.24036 0.97543 0.96028 0.86703 1.81848 1.17141 1.17569 0.89056 1.74888 1.06760 1.00787 1.24547 0.92335 0.97985 0.95584 0.91236 0.89174 0.90228 0.89133 0.88648 0.87927 0.87981 0.77307 0.91655 0.85317 0.88445 0.88462 0.85698 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -32.69 9.39 25.60 0.24 -32.45 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.27 15.21 5.10 85.63 0.44 15.65 16 10 N -0.58 -27.99 2.47 -829.95 -2.05 -30.03 16 11 C 0.15 5.93 5.25 86.38 0.45 6.38 16 12 C -0.15 -5.17 4.39 -10.80 -0.05 -5.22 16 13 C -0.19 -5.55 10.18 30.59 0.31 -5.24 16 14 C -0.14 -3.61 10.25 30.60 0.31 -3.30 16 15 C 0.58 27.39 7.62 86.69 0.66 28.05 16 16 O -0.58 -31.75 16.50 -4.01 -0.07 -31.82 16 17 C -0.11 -4.19 6.59 40.82 0.27 -3.92 16 18 C 0.11 3.04 10.05 83.85 0.84 3.88 16 19 N -0.34 -7.53 3.53 -321.72 -1.14 -8.66 16 20 C 0.11 1.23 4.28 46.01 0.20 1.43 16 21 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 22 C -0.16 -1.50 6.88 31.61 0.22 -1.28 16 23 C 0.04 0.38 7.63 72.48 0.55 0.94 16 24 O -0.39 -6.20 11.65 -148.98 -1.74 -7.94 16 25 C 0.03 0.36 6.64 72.48 0.48 0.85 16 26 N -0.08 -2.09 13.78 37.02 0.51 -1.58 16 27 N -0.20 -6.43 7.71 -49.99 -0.39 -6.81 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.00 0.13 7.50 -2.39 -0.02 0.11 16 30 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.07 2.78 7.76 -2.38 -0.02 2.76 16 32 H 0.09 3.36 5.89 -2.38 -0.01 3.35 16 33 H 0.08 2.93 8.00 -2.39 -0.02 2.91 16 34 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 35 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.21 5.53 7.77 -2.91 -0.02 5.51 16 39 H 0.06 0.98 7.96 -2.39 -0.02 0.96 16 40 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.13 0.46 8.14 -2.39 -0.02 0.45 16 44 H 0.09 1.25 7.30 -2.38 -0.02 1.23 16 Total: -1.00 -78.94 369.04 3.85 -75.09 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.01 Total: 13.54 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.39 Total: 6.89 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -2.77 Total: -103.91 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.80 Total: -39.75 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -78.94 3.85 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330056870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.884 kcal (2) G-P(sol) polarization free energy of solvation -78.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds