Wall clock time and date at job start Tue Mar 31 2020 12:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31983 * 119.61937 * 2 1 4 4 C 1.32338 * 121.68775 * 180.29942 * 3 2 1 5 5 N 1.39253 * 119.62448 * 179.75139 * 4 3 2 6 6 C 1.47016 * 110.99553 * 236.03807 * 5 4 3 7 7 C 1.53100 * 109.25526 * 182.35225 * 6 5 4 8 8 O 1.43021 * 109.29258 * 303.22233 * 7 6 5 9 9 C 1.43015 * 113.73901 * 58.64864 * 8 7 6 10 10 C 1.47008 * 111.00146 * 359.72502 * 5 4 3 11 11 C 1.39098 * 120.74306 * 359.47005 * 4 3 2 12 12 C 1.38266 * 119.17149 * 0.25818 * 11 4 3 13 13 C 1.38618 * 119.62159 * 179.77454 * 2 1 3 14 14 N 1.40182 * 120.40347 * 359.97438 * 13 2 1 15 15 C 1.37459 * 120.00121 * 156.32221 * 14 13 2 16 16 O 1.35104 * 119.99810 * 354.70326 * 15 14 13 17 17 N 1.30112 * 120.00247 * 174.71036 * 15 14 13 18 18 C 1.46503 * 120.00261 * 186.11488 * 17 15 14 19 19 C 1.50701 * 109.47153 * 112.38131 * 18 17 15 20 20 H 1.08001 * 120.00171 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00037 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46718 * 89.99790 * 23 21 19 25 25 H 1.48492 * 109.47099 * 209.99770 * 23 21 19 26 26 H 1.48498 * 109.47152 * 330.00106 * 23 21 19 27 27 H 1.09003 * 109.46469 * 270.23173 * 1 2 3 28 28 H 1.09004 * 109.47277 * 30.22504 * 1 2 3 29 29 H 1.08997 * 109.47504 * 150.23439 * 1 2 3 30 30 H 1.08999 * 109.46898 * 62.44424 * 6 5 4 31 31 H 1.08998 * 109.55033 * 302.30528 * 6 5 4 32 32 H 1.08995 * 109.51278 * 183.26572 * 7 6 5 33 33 H 1.09002 * 109.50651 * 63.17362 * 7 6 5 34 34 H 1.09002 * 109.50983 * 61.26561 * 9 8 7 35 35 H 1.08999 * 109.50317 * 181.35269 * 9 8 7 36 36 H 1.08993 * 109.51002 * 57.67126 * 10 5 4 37 37 H 1.08998 * 109.54039 * 297.55909 * 10 5 4 38 38 H 1.08005 * 120.41678 * 180.28113 * 11 4 3 39 39 H 1.08006 * 120.77538 * 180.02562 * 12 11 4 40 40 H 0.97001 * 120.00224 * 336.31949 * 14 13 2 41 41 H 0.96697 * 114.00339 * 175.78975 * 16 15 14 42 42 H 1.08991 * 109.46993 * 232.38422 * 18 17 15 43 43 H 1.09003 * 109.46427 * 352.38267 * 18 17 15 44 44 H 0.96993 * 119.99807 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1474 0.0000 4 6 3.4818 1.1951 -0.0059 5 7 4.1260 2.4297 -0.0109 6 6 5.0445 2.5400 -1.1535 7 6 5.7730 3.8849 -1.0877 8 8 4.8108 4.9427 -1.0612 9 6 3.9013 4.8662 0.0398 10 6 3.1530 3.5317 -0.0151 11 6 4.2356 0.0261 -0.0013 12 6 3.5861 -1.1945 0.0042 13 6 2.1922 -1.2050 0.0047 14 7 1.4918 -2.4193 0.0101 15 6 2.0926 -3.5614 -0.4635 16 8 3.3164 -3.4948 -1.0320 17 7 1.4827 -4.7064 -0.3643 18 6 2.1746 -5.9404 -0.7451 19 6 2.4158 -6.7803 0.4827 20 1 2.0870 -6.4299 1.4499 21 6 3.0572 -7.9957 0.3713 22 7 3.4590 -8.4218 -0.8063 23 14 3.3569 -9.0366 1.8933 24 1 2.2024 -9.9460 2.1060 25 1 4.5921 -9.8397 1.7083 26 1 3.5142 -8.1515 3.0752 27 1 -0.3632 0.0042 1.0277 28 1 -0.3634 0.8880 -0.5173 29 1 -0.3634 -0.8920 -0.5102 30 1 4.4777 2.4782 -2.0825 31 1 5.7724 1.7296 -1.1159 32 1 6.4119 3.9961 -1.9637 33 1 6.3826 3.9249 -0.1850 34 1 4.4560 4.9342 0.9756 35 1 3.1871 5.6874 -0.0204 36 1 2.5003 3.4443 0.8534 37 1 2.5553 3.4868 -0.9255 38 1 5.3147 0.0713 -0.0015 39 1 4.1458 -2.1183 0.0082 40 1 0.5832 -2.4537 0.3479 41 1 3.6840 -4.3553 -1.2760 42 1 1.5604 -6.4980 -1.4519 43 1 3.1292 -5.6930 -1.2094 44 1 3.9098 -9.2770 -0.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331187848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:27 Heat of formation + Delta-G solvation = 2.784814 kcal Electronic energy + Delta-G solvation = -26536.990356 eV Core-core repulsion = 22683.913662 eV Total energy + Delta-G solvation = -3853.076694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03551 -39.69813 -38.69719 -36.47266 -34.70591 -33.74490 -32.95065 -32.07271 -31.56082 -30.22028 -28.16887 -27.36460 -25.93525 -24.50358 -23.61787 -22.35598 -21.80641 -20.79336 -20.43885 -17.89954 -17.67875 -17.06836 -16.61899 -16.37216 -16.11548 -15.74010 -15.49812 -15.36950 -15.22785 -14.75571 -14.56189 -14.47703 -14.06287 -13.82942 -13.34105 -12.83864 -12.61916 -12.47364 -12.44046 -12.37127 -12.12282 -11.79595 -11.77557 -11.69204 -11.31143 -11.01621 -10.97740 -10.87657 -10.22340 -10.15697 -9.80433 -9.61407 -9.50648 -9.41362 -8.81534 -8.37163 -8.23997 -7.16458 -6.16747 -4.21976 1.10645 1.32906 2.86751 3.21810 3.24392 3.29567 3.32133 3.39951 3.53882 3.85305 4.19791 4.34447 4.45301 4.53484 4.67453 4.75214 4.80751 4.86723 4.97797 4.98948 5.14901 5.16384 5.27000 5.31567 5.43082 5.50500 5.50955 5.51720 5.60347 5.68198 5.82196 6.01415 6.05304 6.13333 6.41683 6.54307 6.73351 6.77602 7.00832 7.10616 7.31805 7.45546 7.73413 7.83038 7.98383 8.15963 8.81221 9.16068 9.46360 10.91154 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024340 B = 0.002433 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.088603 B =11504.578088 C =12078.176992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.105 3.895 3 N -0.492 5.492 4 C 0.270 3.730 5 N -0.473 5.473 6 C 0.020 3.980 7 C 0.064 3.936 8 O -0.386 6.386 9 C 0.060 3.940 10 C 0.032 3.968 11 C -0.155 4.155 12 C -0.082 4.082 13 C 0.120 3.880 14 N -0.630 5.630 15 C 0.521 3.479 16 O -0.537 6.537 17 N -0.607 5.607 18 C 0.201 3.799 19 C -0.512 4.512 20 H 0.063 0.937 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.429 0.571 41 H 0.417 0.583 42 H 0.045 0.955 43 H -0.011 1.011 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 24.363 -0.067 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.037 4.037 3 N -0.206 5.206 4 C 0.037 3.963 5 N -0.192 5.192 6 C -0.107 4.107 7 C -0.013 4.013 8 O -0.304 6.304 9 C -0.017 4.017 10 C -0.096 4.096 11 C -0.178 4.178 12 C -0.111 4.111 13 C 0.018 3.982 14 N -0.269 5.269 15 C 0.206 3.794 16 O -0.341 6.341 17 N -0.353 5.353 18 C 0.074 3.926 19 C -0.550 4.550 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.270 0.730 41 H 0.281 0.719 42 H 0.063 0.937 43 H 0.006 0.994 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.300 25.335 0.304 25.370 hybrid contribution 0.868 -2.403 0.041 2.555 sum 2.168 22.932 0.345 23.037 Atomic orbital electron populations 1.20647 0.88751 1.03570 1.03031 1.20617 0.96476 0.86115 1.00488 1.67233 1.08593 1.28635 1.16108 1.19532 0.88212 0.89900 0.98673 1.59569 1.18642 1.00583 1.40440 1.22970 0.96373 0.99936 0.91373 1.22691 0.90711 0.84996 1.02885 1.87996 1.45539 1.48365 1.48545 1.22790 0.92302 0.96796 0.89822 1.22613 0.93838 0.89375 1.03724 1.21377 1.00849 0.90819 1.04769 1.21743 0.92725 0.99399 0.97245 1.18477 0.92126 0.85967 1.01612 1.41013 1.17344 1.02476 1.66054 1.19899 0.80971 0.87377 0.91121 1.84493 1.32286 1.40777 1.76532 1.72367 1.35583 0.97618 1.29720 1.19515 0.91032 0.84931 0.97120 1.21142 1.37243 1.02968 0.93697 0.91876 1.25021 0.95419 0.97545 0.96513 1.69938 1.39685 1.21026 1.22890 0.86402 0.77724 0.80098 0.82688 1.20401 1.21102 1.19806 0.90429 0.90343 0.90686 0.92866 0.88721 0.87965 0.91963 0.92258 0.88120 0.88679 0.92458 0.84703 0.82199 0.72992 0.71926 0.93738 0.99372 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.61 36.01 0.35 -0.69 16 2 C 0.11 1.39 6.80 -82.39 -0.56 0.83 16 3 N -0.49 -6.61 8.62 -8.49 -0.07 -6.69 16 4 C 0.27 3.47 6.41 -154.84 -0.99 2.48 16 5 N -0.47 -5.17 4.75 -172.84 -0.82 -5.99 16 6 C 0.02 0.18 5.40 -3.71 -0.02 0.16 16 7 C 0.06 0.50 7.01 37.21 0.26 0.76 16 8 O -0.39 -3.74 10.83 -35.23 -0.38 -4.13 16 9 C 0.06 0.49 7.01 37.21 0.26 0.75 16 10 C 0.03 0.32 4.82 -3.71 -0.02 0.30 16 11 C -0.16 -1.97 9.22 -39.25 -0.36 -2.33 16 12 C -0.08 -1.19 8.79 -39.14 -0.34 -1.53 16 13 C 0.12 1.75 6.47 -83.46 -0.54 1.21 16 14 N -0.63 -9.80 5.11 -11.67 -0.06 -9.86 16 15 C 0.52 9.91 8.58 -88.44 -0.76 9.15 16 16 O -0.54 -9.53 9.93 -17.01 -0.17 -9.70 16 17 N -0.61 -13.65 10.59 -63.67 -0.67 -14.33 16 18 C 0.20 5.12 6.05 -5.19 -0.03 5.09 16 19 C -0.51 -14.28 9.39 -34.44 -0.32 -14.61 16 20 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 23 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.74 6.83 -51.93 -0.35 0.38 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.14 1.41 7.18 -52.48 -0.38 1.03 16 39 H 0.16 2.44 5.64 -52.48 -0.30 2.14 16 40 H 0.43 5.91 7.47 -40.82 -0.30 5.60 16 41 H 0.42 7.42 5.85 45.56 0.27 7.68 16 42 H 0.04 1.23 8.14 -51.93 -0.42 0.81 16 43 H -0.01 -0.27 5.26 -51.93 -0.27 -0.54 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -31.85 357.31 -9.71 -41.56 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.45 Total: 9.31 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.18 Total: 3.06 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.89 Total: -61.75 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.55 Total: -13.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.85 -9.71 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.343 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds