Wall clock time and date at job start Tue Mar 31 2020 12:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31983 * 119.61937 * 2 1 4 4 C 1.32338 * 121.68775 * 180.29942 * 3 2 1 5 5 N 1.39253 * 119.62448 * 179.75139 * 4 3 2 6 6 C 1.47016 * 110.99553 * 236.03807 * 5 4 3 7 7 C 1.53100 * 109.25526 * 182.35225 * 6 5 4 8 8 O 1.43021 * 109.29258 * 303.22233 * 7 6 5 9 9 C 1.43015 * 113.73901 * 58.64864 * 8 7 6 10 10 C 1.47008 * 111.00146 * 359.72502 * 5 4 3 11 11 C 1.39098 * 120.74306 * 359.47005 * 4 3 2 12 12 C 1.38266 * 119.17149 * 0.25818 * 11 4 3 13 13 C 1.38618 * 119.62159 * 179.77454 * 2 1 3 14 14 N 1.40182 * 120.40347 * 359.97438 * 13 2 1 15 15 C 1.37459 * 120.00121 * 156.32221 * 14 13 2 16 16 O 1.35104 * 119.99810 * 354.70326 * 15 14 13 17 17 N 1.30112 * 120.00247 * 174.71036 * 15 14 13 18 18 C 1.46503 * 120.00261 * 186.11488 * 17 15 14 19 19 C 1.50701 * 109.47153 * 112.38131 * 18 17 15 20 20 H 1.08001 * 120.00171 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00037 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46718 * 89.99790 * 23 21 19 25 25 H 1.48492 * 109.47099 * 209.99770 * 23 21 19 26 26 H 1.48498 * 109.47152 * 330.00106 * 23 21 19 27 27 H 1.09003 * 109.46469 * 270.23173 * 1 2 3 28 28 H 1.09004 * 109.47277 * 30.22504 * 1 2 3 29 29 H 1.08997 * 109.47504 * 150.23439 * 1 2 3 30 30 H 1.08999 * 109.46898 * 62.44424 * 6 5 4 31 31 H 1.08998 * 109.55033 * 302.30528 * 6 5 4 32 32 H 1.08995 * 109.51278 * 183.26572 * 7 6 5 33 33 H 1.09002 * 109.50651 * 63.17362 * 7 6 5 34 34 H 1.09002 * 109.50983 * 61.26561 * 9 8 7 35 35 H 1.08999 * 109.50317 * 181.35269 * 9 8 7 36 36 H 1.08993 * 109.51002 * 57.67126 * 10 5 4 37 37 H 1.08998 * 109.54039 * 297.55909 * 10 5 4 38 38 H 1.08005 * 120.41678 * 180.28113 * 11 4 3 39 39 H 1.08006 * 120.77538 * 180.02562 * 12 11 4 40 40 H 0.97001 * 120.00224 * 336.31949 * 14 13 2 41 41 H 0.96697 * 114.00339 * 175.78975 * 16 15 14 42 42 H 1.08991 * 109.46993 * 232.38422 * 18 17 15 43 43 H 1.09003 * 109.46427 * 352.38267 * 18 17 15 44 44 H 0.96993 * 119.99807 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1474 0.0000 4 6 3.4818 1.1951 -0.0059 5 7 4.1260 2.4297 -0.0109 6 6 5.0445 2.5400 -1.1535 7 6 5.7730 3.8849 -1.0877 8 8 4.8108 4.9427 -1.0612 9 6 3.9013 4.8662 0.0398 10 6 3.1530 3.5317 -0.0151 11 6 4.2356 0.0261 -0.0013 12 6 3.5861 -1.1945 0.0042 13 6 2.1922 -1.2050 0.0047 14 7 1.4918 -2.4193 0.0101 15 6 2.0926 -3.5614 -0.4635 16 8 3.3164 -3.4948 -1.0320 17 7 1.4827 -4.7064 -0.3643 18 6 2.1746 -5.9404 -0.7451 19 6 2.4158 -6.7803 0.4827 20 1 2.0870 -6.4299 1.4499 21 6 3.0572 -7.9957 0.3713 22 7 3.4590 -8.4218 -0.8063 23 14 3.3569 -9.0366 1.8933 24 1 2.2024 -9.9460 2.1060 25 1 4.5921 -9.8397 1.7083 26 1 3.5142 -8.1515 3.0752 27 1 -0.3632 0.0042 1.0277 28 1 -0.3634 0.8880 -0.5173 29 1 -0.3634 -0.8920 -0.5102 30 1 4.4777 2.4782 -2.0825 31 1 5.7724 1.7296 -1.1159 32 1 6.4119 3.9961 -1.9637 33 1 6.3826 3.9249 -0.1850 34 1 4.4560 4.9342 0.9756 35 1 3.1871 5.6874 -0.0204 36 1 2.5003 3.4443 0.8534 37 1 2.5553 3.4868 -0.9255 38 1 5.3147 0.0713 -0.0015 39 1 4.1458 -2.1183 0.0082 40 1 0.5832 -2.4537 0.3479 41 1 3.6840 -4.3553 -1.2760 42 1 1.5604 -6.4980 -1.4519 43 1 3.1292 -5.6930 -1.2094 44 1 3.9098 -9.2770 -0.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331187848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:26 Heat of formation + Delta-G solvation = -22.827622 kcal Electronic energy + Delta-G solvation = -26538.100995 eV Core-core repulsion = 22683.913662 eV Total energy + Delta-G solvation = -3854.187333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.05620 -40.79752 -39.88562 -37.48393 -35.84076 -35.62868 -34.10949 -33.72674 -32.28205 -31.38721 -29.14049 -28.94483 -27.09777 -25.37413 -25.07312 -23.70859 -22.81282 -22.04830 -21.46032 -19.17754 -18.74742 -18.62293 -18.13371 -17.73458 -17.15094 -16.81547 -16.58882 -16.35923 -16.28925 -15.99018 -15.72626 -15.53384 -15.04861 -14.86780 -14.69258 -14.44913 -13.97839 -13.60589 -13.48783 -13.38814 -13.23358 -13.12372 -12.93465 -12.72791 -12.56322 -12.46012 -12.36426 -12.18876 -11.75777 -11.65634 -10.96110 -10.82675 -10.66953 -10.56292 -10.41254 -10.20471 -9.62919 -8.50547 -8.20426 -6.39926 0.04072 0.23426 1.38350 1.39831 1.49213 1.55201 1.80319 2.34640 2.39644 2.77873 2.91931 2.94982 3.05456 3.32343 3.72744 3.81440 3.90838 3.95816 4.05081 4.14555 4.25250 4.30546 4.39435 4.53519 4.59517 4.65564 4.72219 4.74532 4.75811 4.80155 4.87209 4.96471 5.00174 5.03923 5.15321 5.24054 5.42318 5.61246 5.62190 5.66796 5.90869 6.08859 6.13614 6.15725 6.35479 6.70832 6.94314 7.26477 7.60095 8.81338 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024340 B = 0.002433 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.088603 B =11504.578088 C =12078.176992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.112 3.888 3 N -0.502 5.502 4 C 0.271 3.729 5 N -0.475 5.475 6 C 0.019 3.981 7 C 0.065 3.935 8 O -0.403 6.403 9 C 0.063 3.937 10 C 0.035 3.965 11 C -0.157 4.157 12 C -0.091 4.091 13 C 0.093 3.907 14 N -0.618 5.618 15 C 0.541 3.459 16 O -0.527 6.527 17 N -0.645 5.645 18 C 0.212 3.788 19 C -0.533 4.533 20 H 0.051 0.949 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.276 1.276 26 H -0.270 1.270 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.437 0.563 41 H 0.417 0.583 42 H 0.012 0.988 43 H -0.009 1.009 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 26.122 0.833 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 N -0.217 5.217 4 C 0.038 3.962 5 N -0.194 5.194 6 C -0.107 4.107 7 C -0.012 4.012 8 O -0.321 6.321 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.179 4.179 12 C -0.120 4.120 13 C -0.007 4.007 14 N -0.259 5.259 15 C 0.226 3.774 16 O -0.330 6.330 17 N -0.393 5.393 18 C 0.084 3.916 19 C -0.571 4.571 20 H 0.070 0.930 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.201 1.201 26 H -0.194 1.194 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.280 0.720 41 H 0.280 0.720 42 H 0.030 0.970 43 H 0.008 0.992 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.039 27.173 1.204 27.276 hybrid contribution 0.697 -2.694 -0.267 2.795 sum 2.736 24.480 0.937 24.650 Atomic orbital electron populations 1.20739 0.86654 1.04196 1.04292 1.21037 0.97881 0.85438 0.98642 1.67361 1.08999 1.28529 1.16777 1.19883 0.88273 0.90853 0.97192 1.59610 1.18736 1.00014 1.41079 1.23078 0.96126 1.01481 0.89995 1.22841 0.90391 0.83616 1.04360 1.87981 1.46018 1.49017 1.49133 1.22863 0.92447 0.96196 0.89842 1.22618 0.93795 0.90039 1.02803 1.21545 1.01963 0.90056 1.04350 1.21761 0.92852 0.99718 0.97692 1.18616 0.92354 0.85821 1.03891 1.40975 1.17639 1.01802 1.65467 1.20130 0.80718 0.87614 0.88908 1.84535 1.31787 1.40566 1.76118 1.72294 1.35882 0.97621 1.33500 1.19145 0.90641 0.86146 0.95646 1.21398 1.37706 1.04013 0.94025 0.93036 1.25858 0.94921 0.98590 0.99570 1.70033 1.40093 1.21560 1.24772 0.85375 0.77937 0.78345 0.78927 1.19827 1.20064 1.19413 0.88754 0.89483 0.90240 0.94045 0.87387 0.85944 0.91053 0.91508 0.86347 0.89057 0.93842 0.82551 0.83292 0.72043 0.71976 0.97020 0.99175 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.61 71.24 0.68 -1.19 16 2 C 0.11 2.81 6.80 42.63 0.29 3.10 16 3 N -0.50 -12.84 8.62 -180.76 -1.56 -14.39 16 4 C 0.27 6.58 6.41 132.99 0.85 7.43 16 5 N -0.48 -9.55 4.75 -700.75 -3.33 -12.88 16 6 C 0.02 0.31 5.40 86.31 0.47 0.78 16 7 C 0.06 0.84 7.01 72.02 0.50 1.35 16 8 O -0.40 -6.95 10.83 -148.98 -1.61 -8.56 16 9 C 0.06 0.91 7.01 72.02 0.50 1.41 16 10 C 0.03 0.64 4.82 86.32 0.42 1.06 16 11 C -0.16 -3.75 9.22 22.48 0.21 -3.54 16 12 C -0.09 -2.58 8.79 22.56 0.20 -2.38 16 13 C 0.09 2.65 6.47 38.18 0.25 2.90 16 14 N -0.62 -18.97 5.11 -301.23 -1.54 -20.51 16 15 C 0.54 20.71 8.58 179.59 1.54 22.25 16 16 O -0.53 -18.86 9.93 -83.79 -0.83 -19.69 16 17 N -0.64 -29.67 10.59 -469.59 -4.97 -34.65 16 18 C 0.21 11.20 6.05 85.63 0.52 11.72 16 19 C -0.53 -30.40 9.39 25.60 0.24 -30.16 16 20 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.56 5.46 84.65 0.46 1.02 16 22 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 23 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.08 1.41 6.94 -2.39 -0.02 1.39 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 1.43 6.83 -2.39 -0.02 1.41 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.74 7.85 -2.39 -0.02 1.72 16 37 H 0.04 0.92 8.03 -2.39 -0.02 0.90 16 38 H 0.16 2.95 7.18 -2.91 -0.02 2.93 16 39 H 0.15 4.51 5.64 -2.91 -0.02 4.49 16 40 H 0.44 11.76 7.47 -92.71 -0.69 11.06 16 41 H 0.42 15.17 5.85 -74.06 -0.43 14.74 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 43 H -0.01 -0.45 5.26 -2.39 -0.01 -0.47 16 44 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -68.43 357.31 -4.48 -72.91 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.07 Total: 29.56 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 7.13 Total: 15.74 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -11.12 Total: -135.68 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -2.45 Total: -28.25 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.43 -4.48 -72.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.080 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds