Wall clock time and date at job start Tue Mar 31 2020 12:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99691 * 2 1 4 4 H 1.48504 * 109.47111 * 269.99758 * 3 2 1 5 5 H 1.48501 * 109.47597 * 29.99453 * 3 2 1 6 6 H 1.48501 * 109.47059 * 149.99952 * 3 2 1 7 7 C 1.37873 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99677 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.36453 * 125.85850 * 275.18304 * 10 9 7 12 12 C 1.34952 * 108.94842 * 180.24459 * 11 10 9 13 13 C 1.41205 * 108.24612 * 359.75840 * 12 11 10 14 14 N 1.32935 * 126.37731 * 180.02562 * 13 12 11 15 15 C 1.33830 * 120.00196 * 359.95493 * 14 13 12 16 16 O 1.21840 * 119.99724 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00217 * 180.02562 * 15 14 13 18 18 C 1.47679 * 125.83312 * 359.68850 * 17 15 14 19 19 C 1.55207 * 104.75115 * 155.94549 * 18 17 15 20 20 C 1.55351 * 101.58136 * 36.84937 * 19 18 17 21 21 C 1.46146 * 125.83563 * 179.97438 * 17 15 14 22 22 C 1.54006 * 111.01857 * 59.92257 * 21 17 15 23 23 C 1.55167 * 101.89535 * 219.03052 * 22 21 17 24 24 O 1.44457 * 103.60076 * 36.36355 * 23 22 21 25 25 C 1.43974 * 107.01040 * 320.45068 * 24 23 22 26 26 N 1.37423 * 107.24299 * 359.97438 * 13 12 11 27 27 H 0.97001 * 126.36252 * 179.97438 * 26 13 12 28 28 H 0.96998 * 120.00052 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47091 * 60.00567 * 9 7 2 30 30 H 1.08995 * 109.47532 * 300.00090 * 9 7 2 31 31 H 1.08001 * 125.52061 * 0.02562 * 11 10 9 32 32 H 1.08008 * 125.87464 * 179.76653 * 12 11 10 33 33 H 1.09002 * 110.36564 * 274.87886 * 18 17 15 34 34 H 1.09003 * 110.36615 * 37.19270 * 18 17 15 35 35 H 1.09007 * 111.17399 * 278.72287 * 19 18 17 36 36 H 1.08995 * 110.92391 * 154.86650 * 19 18 17 37 37 H 1.09001 * 110.76614 * 206.70902 * 20 19 18 38 38 H 1.09002 * 110.92522 * 83.38662 * 20 19 18 39 39 H 1.09003 * 110.94369 * 337.17780 * 22 21 17 40 40 H 1.08994 * 110.94511 * 100.87459 * 22 21 17 41 41 H 1.09004 * 110.59592 * 277.83689 * 23 22 21 42 42 H 1.08999 * 110.60260 * 154.89656 * 23 22 21 43 43 H 1.09000 * 109.92656 * 266.96288 * 25 24 23 44 44 H 1.08996 * 109.93113 * 145.63492 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.1726 -3.3619 1.1016 12 6 4.6414 -4.5656 0.7112 13 6 4.7702 -4.5552 -0.6949 14 7 5.2009 -5.5573 -1.4547 15 6 5.5640 -6.7159 -0.8916 16 8 5.5002 -6.8518 0.3175 17 7 6.0012 -7.7317 -1.6618 18 6 6.1248 -7.7099 -3.1332 19 6 7.1966 -8.7851 -3.4558 20 6 6.8736 -9.8749 -2.3968 21 6 6.4285 -9.0451 -1.1841 22 6 5.2876 -9.7584 -0.4348 23 6 6.0487 -10.4385 0.7340 24 8 7.0727 -9.4789 1.0765 25 6 7.5627 -8.9264 -0.1594 26 7 4.3662 -3.3164 -1.1318 27 1 4.3433 -3.0104 -2.0519 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 3.9705 -3.0675 2.1208 32 1 4.8773 -5.3945 1.3623 33 1 5.1731 -7.9684 -3.5977 34 1 6.4586 -6.7289 -3.4714 35 1 8.2035 -8.3915 -3.3164 36 1 7.0675 -9.1724 -4.4664 37 1 7.7628 -10.4590 -2.1599 38 1 6.0670 -10.5233 -2.7390 39 1 4.5590 -9.0398 -0.0594 40 1 4.8077 -10.5012 -1.0718 41 1 6.4965 -11.3764 0.4056 42 1 5.3819 -10.6062 1.5798 43 1 8.4313 -9.4901 -0.4998 44 1 7.8281 -7.8787 -0.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345245680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:40 Heat of formation + Delta-G solvation = 49.606868 kcal Electronic energy + Delta-G solvation = -27247.607037 eV Core-core repulsion = 23396.560699 eV Total energy + Delta-G solvation = -3851.046338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91682 -40.54004 -38.12252 -36.70781 -34.23680 -32.91672 -31.73772 -31.22290 -31.01198 -30.65607 -29.04221 -27.08153 -25.01166 -23.48753 -22.65500 -22.19340 -21.69211 -21.29281 -20.30616 -18.48609 -17.41864 -17.08531 -16.38214 -16.12560 -15.96360 -15.37743 -15.13430 -14.95329 -14.75572 -14.63481 -14.19351 -13.81294 -13.48491 -13.24482 -12.99245 -12.86391 -12.79271 -12.72368 -12.46408 -12.24777 -12.03692 -11.57865 -11.47385 -11.42151 -11.12553 -11.02672 -10.72239 -10.68578 -10.60597 -10.05509 -9.66849 -9.65201 -9.54941 -9.06620 -9.04034 -8.32888 -8.22961 -6.84641 -6.51567 -4.59986 1.73141 1.99553 2.95952 3.00799 3.07135 3.12586 3.29523 3.97373 4.01534 4.30700 4.35335 4.51325 4.55995 4.76813 4.77949 4.98601 4.98961 5.13907 5.20967 5.22017 5.30001 5.47995 5.61373 5.61623 5.68380 5.73754 5.76507 5.82953 5.86740 5.92458 6.00326 6.06986 6.10550 6.13051 6.21410 6.33434 6.66846 6.93472 6.94734 7.00709 7.27412 7.55927 7.73824 8.00716 8.24507 8.46947 8.52571 9.00929 9.58804 10.60064 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026676 B = 0.002681 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.399498 B =10442.755185 C =10867.551760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.083 3.917 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.230 3.770 10 N -0.346 5.346 11 C 0.164 3.836 12 C -0.329 4.329 13 C 0.490 3.510 14 N -0.707 5.707 15 C 0.701 3.299 16 O -0.612 6.612 17 N -0.605 5.605 18 C 0.118 3.882 19 C -0.136 4.136 20 C -0.120 4.120 21 C 0.151 3.849 22 C -0.158 4.158 23 C 0.052 3.948 24 O -0.367 6.367 25 C 0.055 3.945 26 N -0.471 5.471 27 H 0.444 0.556 28 H 0.272 0.728 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.188 0.812 32 H 0.185 0.815 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -14.248 -4.543 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.602 4.602 8 H 0.103 0.897 9 C 0.112 3.888 10 N -0.133 5.133 11 C 0.021 3.979 12 C -0.362 4.362 13 C 0.236 3.764 14 N -0.471 5.471 15 C 0.403 3.597 16 O -0.492 6.492 17 N -0.341 5.341 18 C -0.005 4.005 19 C -0.175 4.175 20 C -0.158 4.158 21 C 0.063 3.937 22 C -0.197 4.197 23 C -0.025 4.025 24 O -0.285 6.285 25 C -0.023 4.023 26 N -0.194 5.194 27 H 0.291 0.709 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.205 0.795 32 H 0.202 0.798 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.965 -13.707 -4.579 19.415 hybrid contribution -0.063 1.008 -0.180 1.026 sum 12.902 -12.699 -4.759 18.718 Atomic orbital electron populations 1.69862 1.06265 1.27862 1.47243 1.24833 0.94865 0.98985 0.93652 0.86889 0.80296 0.83619 0.79158 1.19610 1.20231 1.18762 1.21271 0.87926 0.95894 1.55128 0.89673 1.20312 0.96757 0.72176 0.99564 1.47424 1.57556 1.11724 0.96553 1.22795 0.92718 0.90444 0.91954 1.22443 1.18231 1.00347 0.95181 1.18679 0.84783 0.83399 0.89575 1.68032 1.40586 1.01626 1.36903 1.16125 0.77911 0.82536 0.83158 1.90799 1.60191 1.83890 1.14346 1.46948 1.69221 1.11488 1.06470 1.22126 0.97579 0.99502 0.81293 1.22916 0.99601 0.96033 0.98904 1.22700 1.01818 0.97088 0.94227 1.21429 0.93942 0.83708 0.94602 1.23449 0.98749 1.00017 0.97439 1.23450 0.89704 0.91577 0.97786 1.88950 1.54766 1.57033 1.27731 1.23378 0.94735 0.99906 0.84271 1.44354 1.62271 1.09515 1.03306 0.70891 0.91724 0.91802 0.93872 0.79543 0.79790 0.92372 0.90193 0.90771 0.90137 0.90084 0.90218 0.89094 0.90557 0.92752 0.89300 0.92613 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.08 13.96 55.43 0.77 -23.31 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 17.96 27.47 -169.99 -4.67 13.30 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -4.97 6.54 56.52 0.37 -4.60 16 7 C -0.56 -13.75 9.94 -34.44 -0.34 -14.09 16 8 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.23 4.44 5.26 -5.19 -0.03 4.41 16 10 N -0.35 -6.29 3.63 -62.24 -0.23 -6.52 16 11 C 0.16 2.77 11.45 -16.66 -0.19 2.58 16 12 C -0.33 -6.17 9.52 -39.62 -0.38 -6.55 16 13 C 0.49 9.44 8.07 -155.29 -1.25 8.18 16 14 N -0.71 -13.84 9.97 -15.79 -0.16 -14.00 16 15 C 0.70 13.72 7.51 -87.77 -0.66 13.06 16 16 O -0.61 -13.19 11.64 5.06 0.06 -13.14 16 17 N -0.60 -9.46 2.85 -161.59 -0.46 -9.93 16 18 C 0.12 1.47 6.92 -2.23 -0.02 1.45 16 19 C -0.14 -1.20 7.10 -24.32 -0.17 -1.37 16 20 C -0.12 -1.09 6.05 -25.20 -0.15 -1.24 16 21 C 0.15 1.97 0.79 -131.05 -0.10 1.86 16 22 C -0.16 -2.06 6.16 -25.06 -0.15 -2.21 16 23 C 0.05 0.63 7.73 38.30 0.30 0.93 16 24 O -0.37 -5.79 11.54 -35.23 -0.41 -6.19 16 25 C 0.06 0.78 6.49 37.32 0.24 1.02 16 26 N -0.47 -8.27 7.38 31.33 0.23 -8.04 16 27 H 0.44 6.79 8.96 -182.55 -1.64 5.15 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 1.15 7.20 -51.93 -0.37 0.78 16 30 H 0.04 0.79 7.57 -51.93 -0.39 0.40 16 31 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.19 3.68 5.77 -52.48 -0.30 3.38 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.05 8.00 -51.93 -0.42 0.63 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.61 7.31 -51.93 -0.38 0.23 16 38 H 0.08 0.63 7.43 -51.93 -0.39 0.24 16 39 H 0.09 1.52 6.80 -51.93 -0.35 1.17 16 40 H 0.08 0.80 7.40 -51.93 -0.38 0.41 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.63 7.22 -51.93 -0.37 0.26 16 44 H 0.09 1.45 7.29 -51.93 -0.38 1.07 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -31.87 353.76 -10.04 -41.91 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.50 Total: 10.57 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.01 Total: 10.02 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.16 Total: -61.80 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.35 Total: -19.33 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.67 Total: 13.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.87 -10.04 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345245680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.514 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds