Wall clock time and date at job start Tue Mar 31 2020 12:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99691 * 2 1 4 4 H 1.48504 * 109.47111 * 269.99758 * 3 2 1 5 5 H 1.48501 * 109.47597 * 29.99453 * 3 2 1 6 6 H 1.48501 * 109.47059 * 149.99952 * 3 2 1 7 7 C 1.37873 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99677 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.36453 * 125.85850 * 275.18304 * 10 9 7 12 12 C 1.34952 * 108.94842 * 180.24459 * 11 10 9 13 13 C 1.41205 * 108.24612 * 359.75840 * 12 11 10 14 14 N 1.32935 * 126.37731 * 180.02562 * 13 12 11 15 15 C 1.33830 * 120.00196 * 359.95493 * 14 13 12 16 16 O 1.21840 * 119.99724 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00217 * 180.02562 * 15 14 13 18 18 C 1.47679 * 125.83312 * 359.68850 * 17 15 14 19 19 C 1.55207 * 104.75115 * 155.94549 * 18 17 15 20 20 C 1.55351 * 101.58136 * 36.84937 * 19 18 17 21 21 C 1.46146 * 125.83563 * 179.97438 * 17 15 14 22 22 C 1.54006 * 111.01857 * 59.92257 * 21 17 15 23 23 C 1.55167 * 101.89535 * 219.03052 * 22 21 17 24 24 O 1.44457 * 103.60076 * 36.36355 * 23 22 21 25 25 C 1.43974 * 107.01040 * 320.45068 * 24 23 22 26 26 N 1.37423 * 107.24299 * 359.97438 * 13 12 11 27 27 H 0.97001 * 126.36252 * 179.97438 * 26 13 12 28 28 H 0.96998 * 120.00052 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47091 * 60.00567 * 9 7 2 30 30 H 1.08995 * 109.47532 * 300.00090 * 9 7 2 31 31 H 1.08001 * 125.52061 * 0.02562 * 11 10 9 32 32 H 1.08008 * 125.87464 * 179.76653 * 12 11 10 33 33 H 1.09002 * 110.36564 * 274.87886 * 18 17 15 34 34 H 1.09003 * 110.36615 * 37.19270 * 18 17 15 35 35 H 1.09007 * 111.17399 * 278.72287 * 19 18 17 36 36 H 1.08995 * 110.92391 * 154.86650 * 19 18 17 37 37 H 1.09001 * 110.76614 * 206.70902 * 20 19 18 38 38 H 1.09002 * 110.92522 * 83.38662 * 20 19 18 39 39 H 1.09003 * 110.94369 * 337.17780 * 22 21 17 40 40 H 1.08994 * 110.94511 * 100.87459 * 22 21 17 41 41 H 1.09004 * 110.59592 * 277.83689 * 23 22 21 42 42 H 1.08999 * 110.60260 * 154.89656 * 23 22 21 43 43 H 1.09000 * 109.92656 * 266.96288 * 25 24 23 44 44 H 1.08996 * 109.93113 * 145.63492 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.1726 -3.3619 1.1016 12 6 4.6414 -4.5656 0.7112 13 6 4.7702 -4.5552 -0.6949 14 7 5.2009 -5.5573 -1.4547 15 6 5.5640 -6.7159 -0.8916 16 8 5.5002 -6.8518 0.3175 17 7 6.0012 -7.7317 -1.6618 18 6 6.1248 -7.7099 -3.1332 19 6 7.1966 -8.7851 -3.4558 20 6 6.8736 -9.8749 -2.3968 21 6 6.4285 -9.0451 -1.1841 22 6 5.2876 -9.7584 -0.4348 23 6 6.0487 -10.4385 0.7340 24 8 7.0727 -9.4789 1.0765 25 6 7.5627 -8.9264 -0.1594 26 7 4.3662 -3.3164 -1.1318 27 1 4.3433 -3.0104 -2.0519 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8904 31 1 3.9705 -3.0675 2.1208 32 1 4.8773 -5.3945 1.3623 33 1 5.1731 -7.9684 -3.5977 34 1 6.4586 -6.7289 -3.4714 35 1 8.2035 -8.3915 -3.3164 36 1 7.0675 -9.1724 -4.4664 37 1 7.7628 -10.4590 -2.1599 38 1 6.0670 -10.5233 -2.7390 39 1 4.5590 -9.0398 -0.0594 40 1 4.8077 -10.5012 -1.0718 41 1 6.4965 -11.3764 0.4056 42 1 5.3819 -10.6062 1.5798 43 1 8.4313 -9.4901 -0.4998 44 1 7.8281 -7.8787 -0.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345245680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:39 Heat of formation + Delta-G solvation = 26.721747 kcal Electronic energy + Delta-G solvation = -27248.599410 eV Core-core repulsion = 23396.560699 eV Total energy + Delta-G solvation = -3852.038711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31909 -41.68127 -39.46522 -37.80229 -35.87739 -34.61375 -33.04535 -32.54853 -32.14134 -32.06790 -30.05163 -28.72816 -26.00597 -24.90997 -23.96336 -23.40936 -22.78651 -22.67838 -21.49703 -19.73113 -19.27112 -18.49691 -17.67330 -17.36944 -17.02280 -16.64784 -16.44949 -16.36431 -16.07074 -15.91886 -15.56610 -15.06106 -14.80464 -14.55839 -14.43583 -14.19129 -13.99227 -13.79428 -13.76516 -13.42462 -13.20180 -13.03469 -12.59648 -12.53768 -12.38786 -12.27449 -11.98712 -11.83952 -11.57502 -11.44073 -11.25976 -11.11852 -10.92693 -10.64299 -10.51208 -9.85490 -9.47572 -8.43445 -8.31941 -6.57096 0.27169 0.57284 1.38443 1.39585 1.48701 1.65812 2.10418 2.25296 2.87216 2.95250 3.00053 3.11508 3.57473 3.61513 3.77474 3.89131 4.00940 4.13697 4.21307 4.24153 4.31315 4.37948 4.40482 4.52877 4.62437 4.65170 4.75768 4.78658 4.83228 4.88502 4.95283 4.97916 5.07092 5.11635 5.14366 5.15241 5.26391 5.35278 5.75933 5.86060 5.97184 6.00723 6.10933 6.41031 6.53054 6.83838 7.06893 7.09358 8.12269 8.73318 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026676 B = 0.002681 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.399498 B =10442.755185 C =10867.551760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.225 1.225 7 C -0.566 4.566 8 H 0.031 0.969 9 C 0.236 3.764 10 N -0.351 5.351 11 C 0.179 3.821 12 C -0.347 4.347 13 C 0.474 3.526 14 N -0.716 5.716 15 C 0.686 3.314 16 O -0.643 6.643 17 N -0.608 5.608 18 C 0.110 3.890 19 C -0.122 4.122 20 C -0.110 4.110 21 C 0.140 3.860 22 C -0.156 4.156 23 C 0.051 3.949 24 O -0.401 6.401 25 C 0.056 3.944 26 N -0.467 5.467 27 H 0.453 0.547 28 H 0.273 0.727 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.224 0.776 32 H 0.169 0.831 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.629 -14.770 -5.684 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.148 1.148 7 C -0.605 4.605 8 H 0.050 0.950 9 C 0.117 3.883 10 N -0.136 5.136 11 C 0.036 3.964 12 C -0.379 4.379 13 C 0.219 3.781 14 N -0.481 5.481 15 C 0.386 3.614 16 O -0.526 6.526 17 N -0.343 5.343 18 C -0.013 4.013 19 C -0.160 4.160 20 C -0.147 4.147 21 C 0.053 3.947 22 C -0.195 4.195 23 C -0.025 4.025 24 O -0.320 6.320 25 C -0.022 4.022 26 N -0.191 5.191 27 H 0.301 0.699 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.240 0.760 32 H 0.186 0.814 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.459 -14.276 -5.761 21.816 hybrid contribution -0.907 1.064 0.186 1.410 sum 14.552 -13.212 -5.575 20.430 Atomic orbital electron populations 1.70041 1.08750 1.29040 1.49648 1.25852 0.95558 1.03474 0.92937 0.85696 0.80040 0.77461 0.79643 1.18993 1.21075 1.14776 1.21443 0.90747 0.93855 1.54418 0.95021 1.20255 0.93237 0.72956 1.01812 1.47423 1.57528 1.11751 0.96943 1.23310 0.90689 0.89355 0.93088 1.22291 1.19722 1.00876 0.95060 1.18899 0.85176 0.83869 0.90119 1.68093 1.40951 1.01924 1.37093 1.16481 0.78226 0.83350 0.83294 1.90766 1.61561 1.84564 1.15746 1.47095 1.67842 1.11582 1.07807 1.22346 0.99163 1.00485 0.79293 1.22894 0.98176 0.94436 1.00511 1.22749 1.03501 0.96702 0.91771 1.21802 0.93477 0.83060 0.96326 1.23414 0.98039 0.99709 0.98349 1.23658 0.89136 0.92171 0.97553 1.88898 1.55759 1.58231 1.29161 1.23414 0.96320 0.98223 0.84210 1.44335 1.62045 1.09017 1.03704 0.69868 0.91757 0.88773 0.91599 0.75997 0.81416 0.92230 0.91551 0.90457 0.87001 0.87453 0.88288 0.93833 0.87521 0.88878 0.89428 0.89222 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.98 13.96 21.45 0.30 -52.68 16 2 C 0.02 1.12 5.47 84.65 0.46 1.58 16 3 Si 0.95 35.62 27.47 68.60 1.88 37.50 16 4 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.29 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.23 -7.04 6.54 99.48 0.65 -6.39 16 7 C -0.57 -27.71 9.94 25.60 0.25 -27.45 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.24 8.56 5.26 85.63 0.45 9.01 16 10 N -0.35 -12.40 3.63 -350.84 -1.28 -13.68 16 11 C 0.18 5.94 11.45 83.22 0.95 6.90 16 12 C -0.35 -13.45 9.52 22.24 0.21 -13.24 16 13 C 0.47 18.84 8.07 133.95 1.08 19.92 16 14 N -0.72 -29.22 9.97 -322.56 -3.21 -32.43 16 15 C 0.69 28.17 7.51 179.35 1.35 29.52 16 16 O -0.64 -29.63 11.64 -4.80 -0.06 -29.69 16 17 N -0.61 -19.31 2.85 -783.31 -2.24 -21.55 16 18 C 0.11 2.63 6.92 86.91 0.60 3.23 16 19 C -0.12 -1.75 7.10 32.16 0.23 -1.53 16 20 C -0.11 -1.55 6.05 31.58 0.19 -1.36 16 21 C 0.14 3.50 0.79 4.29 0.00 3.51 16 22 C -0.16 -4.00 6.16 31.68 0.20 -3.81 16 23 C 0.05 1.19 7.73 72.73 0.56 1.76 16 24 O -0.40 -12.74 11.54 -148.98 -1.72 -14.46 16 25 C 0.06 1.56 6.49 72.09 0.47 2.03 16 26 N -0.47 -16.42 7.38 -54.79 -0.40 -16.83 16 27 H 0.45 13.79 8.96 -213.28 -1.91 11.88 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.09 2.97 7.20 -2.39 -0.02 2.95 16 30 H 0.07 2.17 7.57 -2.39 -0.02 2.15 16 31 H 0.22 5.53 8.06 -2.91 -0.02 5.51 16 32 H 0.17 7.16 5.77 -2.91 -0.02 7.14 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.74 8.00 -2.39 -0.02 1.73 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 1.04 7.31 -2.39 -0.02 1.02 16 38 H 0.10 1.08 7.43 -2.39 -0.02 1.06 16 39 H 0.04 1.53 6.80 -2.39 -0.02 1.51 16 40 H 0.11 1.99 7.40 -2.39 -0.02 1.97 16 41 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 1.82 7.22 -2.39 -0.02 1.81 16 44 H 0.05 1.65 7.29 -2.39 -0.02 1.64 16 Total: -1.00 -76.14 353.76 -0.65 -76.79 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.94 Total: 36.96 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 7.01 Total: 30.07 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -6.83 Total: -137.17 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.77 Total: -44.15 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 1.88 Total: 37.50 kcal Total: -76.14 -0.65 -76.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345245680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.508 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds