Wall clock time and date at job start Tue Mar 31 2020 12:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47579 * 2 1 4 4 C 1.53010 * 109.46909 * 119.99870 * 2 1 3 5 5 C 1.52998 * 109.46909 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47021 * 299.99668 * 5 4 2 7 7 S 1.81402 * 109.47083 * 180.02562 * 6 5 4 8 8 O 1.42111 * 109.46871 * 68.61315 * 7 6 5 9 9 C 1.81401 * 103.00444 * 185.00090 * 7 6 5 10 10 C 1.50700 * 109.47180 * 180.02562 * 9 7 6 11 11 C 1.38630 * 119.74498 * 90.00202 * 10 9 7 12 12 C 1.37623 * 120.24117 * 180.22751 * 11 10 9 13 13 C 1.40707 * 119.74849 * 359.52215 * 12 11 10 14 14 C 1.41400 * 120.24843 * 180.22492 * 13 12 11 15 15 H 1.07994 * 120.00480 * 204.52708 * 14 13 12 16 16 C 1.39950 * 119.99509 * 24.53120 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.72383 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.72017 * 16 14 13 19 19 H 1.48499 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99981 * 18 16 14 21 21 H 1.48490 * 109.47155 * 239.99623 * 18 16 14 22 22 C 1.40715 * 119.51064 * 0.47652 * 13 12 11 23 23 C 1.37618 * 119.74364 * 359.74989 * 22 13 12 24 24 C 1.53003 * 109.47226 * 60.00543 * 6 5 4 25 25 C 1.52992 * 109.46903 * 299.99892 * 24 6 5 26 26 H 1.08993 * 109.47397 * 300.00543 * 1 2 3 27 27 H 1.09005 * 109.46528 * 60.00391 * 1 2 3 28 28 H 1.08997 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47170 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46421 * 299.99594 * 3 2 1 31 31 H 1.08993 * 109.47199 * 59.99336 * 3 2 1 32 32 H 1.08997 * 109.46820 * 60.00220 * 4 2 1 33 33 H 1.08993 * 109.46753 * 299.99981 * 4 2 1 34 34 H 1.08999 * 109.46678 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47296 * 59.99930 * 5 4 2 36 36 H 1.08994 * 109.47299 * 300.00260 * 6 5 4 37 37 H 1.09000 * 109.46892 * 59.99934 * 9 7 6 38 38 H 1.09003 * 109.46654 * 300.00269 * 9 7 6 39 39 H 1.08001 * 119.88189 * 359.95744 * 11 10 9 40 40 H 1.08002 * 120.12205 * 179.72192 * 12 11 10 41 41 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.12804 * 179.73261 * 22 13 12 43 43 H 1.08002 * 119.87235 * 180.02562 * 23 22 13 44 44 H 1.09007 * 109.46873 * 59.99509 * 24 6 5 45 45 H 1.08993 * 109.46972 * 179.97438 * 24 6 5 46 46 H 1.09004 * 109.47140 * 300.00036 * 25 24 6 47 47 H 1.08996 * 109.47289 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4436 -0.0002 7 16 5.8934 -1.4449 -0.0002 8 8 6.3664 -2.2813 1.0468 9 6 6.3010 -2.1923 -1.6020 10 6 7.7984 -2.2657 -1.7556 11 6 8.4805 -3.3901 -1.3171 12 6 9.8483 -3.4660 -1.4480 13 6 10.5533 -2.4011 -2.0387 14 6 11.9582 -2.4699 -2.1829 15 1 12.5392 -1.5622 -2.2519 16 6 12.5959 -3.7146 -2.2362 17 7 11.9044 -4.7931 -2.5009 18 14 14.4346 -3.8358 -1.9295 19 1 14.9806 -2.4828 -1.6533 20 1 14.6844 -4.7178 -0.7612 21 1 15.1002 -4.4034 -3.1294 22 6 9.8504 -1.2648 -2.4801 23 6 8.4831 -1.2086 -2.3348 24 6 3.5695 -0.7223 -1.2495 25 6 2.0396 -0.7217 -1.2492 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1392 34 1 3.9332 -1.2361 2.1388 35 1 3.9337 0.3056 1.2488 36 1 3.7157 -2.4710 0.0001 37 1 5.8826 -1.5839 -2.4038 38 1 5.8813 -3.1970 -1.6514 39 1 7.9369 -4.2077 -0.8671 40 1 10.3783 -4.3410 -1.1017 41 1 12.3464 -5.6558 -2.5374 42 1 10.3820 -0.4398 -2.9310 43 1 7.9415 -0.3376 -2.6732 44 1 3.9333 0.3052 -1.2497 45 1 3.9328 -1.2362 -2.1393 46 1 1.6758 -1.7492 -1.2489 47 1 1.6763 -0.2083 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346085822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:04 Heat of formation + Delta-G solvation = -56.575259 kcal Electronic energy + Delta-G solvation = -24432.528527 eV Core-core repulsion = 21090.878250 eV Total energy + Delta-G solvation = -3341.650277 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.55459 -37.62680 -35.20218 -34.00340 -33.42283 -31.40399 -30.83082 -29.31314 -27.60739 -27.53241 -26.58647 -24.05392 -22.77746 -21.48685 -21.02182 -20.04289 -18.62065 -17.32894 -17.06861 -15.89460 -15.35351 -15.17984 -15.02006 -14.70190 -14.31831 -14.15198 -13.98275 -13.75143 -13.49265 -13.37477 -12.73778 -12.60346 -12.46504 -12.43129 -12.11143 -11.97194 -11.93071 -11.66259 -11.62612 -11.43997 -11.21824 -11.16607 -11.06929 -10.98676 -10.71242 -10.61935 -10.50380 -10.34464 -10.10513 -9.73322 -9.49195 -9.40518 -9.09118 -7.91550 -7.47313 -7.20793 -6.79275 -4.36860 1.77526 2.75837 3.01763 3.05153 3.07749 3.12004 3.28346 3.90971 4.17659 4.44958 4.48940 4.60241 4.62318 4.82304 5.00025 5.17817 5.20986 5.34200 5.37107 5.44468 5.47420 5.54409 5.57635 5.61841 5.65125 5.72574 5.73591 5.75438 5.86003 5.89165 5.92113 5.99755 6.06281 6.17261 6.21376 6.26500 6.34617 6.37423 6.39683 6.93632 7.03689 7.23878 7.31872 7.58016 7.80280 8.02748 8.06418 8.25403 8.61050 8.85623 8.93795 10.14425 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.002449 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.668306 B =11428.276071 C =11591.151031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.094 4.094 6 C -0.419 4.419 7 S 1.217 4.783 8 O -0.844 6.844 9 C -0.354 4.354 10 C -0.206 4.206 11 C -0.086 4.086 12 C -0.164 4.164 13 C 0.112 3.888 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.790 5.790 18 Si 0.909 3.091 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.226 4.226 23 C -0.081 4.081 24 C -0.096 4.096 25 C -0.104 4.104 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.281 0.719 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.961 10.525 2.351 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.132 4.132 6 C -0.535 4.535 7 S 1.420 4.580 8 O -0.840 6.840 9 C -0.492 4.492 10 C -0.210 4.210 11 C -0.105 4.105 12 C -0.183 4.183 13 C 0.109 3.891 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.415 5.415 18 Si 0.733 3.267 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.246 4.246 23 C -0.101 4.101 24 C -0.134 4.134 25 C -0.143 4.143 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.371 10.577 3.073 20.569 hybrid contribution -0.143 -2.582 -0.165 2.591 sum -17.514 7.995 2.909 19.471 Atomic orbital electron populations 1.21870 0.94987 1.01494 1.01532 1.20531 0.94824 0.95748 0.95439 1.21998 1.01987 0.94979 1.01444 1.21559 0.95253 1.00217 0.97055 1.21189 0.95831 1.00556 0.95613 1.27648 1.21855 1.03746 1.00225 1.70482 0.84332 1.17729 0.85457 1.93105 1.72182 1.71371 1.47301 1.26148 1.00751 1.07775 1.14523 1.18270 0.90185 0.98194 1.14306 1.20553 0.94980 0.95862 0.99138 1.21302 0.92482 1.01108 1.03412 1.17671 0.93251 0.90723 0.87431 1.19671 0.92232 0.93044 1.43750 0.90161 1.25964 1.01015 0.95327 0.92113 1.69838 1.38407 0.99978 1.33250 0.86257 0.82054 0.79625 0.78788 1.18270 1.19674 1.19974 1.20961 0.93248 1.00798 1.09554 1.20375 0.94374 0.96266 0.99069 1.21298 0.95726 1.00950 0.95405 1.21574 0.95540 1.00200 0.96970 0.92825 0.92736 0.92970 0.91427 0.92774 0.92921 0.92374 0.91994 0.91864 0.90584 0.89951 0.87356 0.90772 0.89857 0.86427 0.90833 0.88626 0.88694 0.90224 0.91271 0.92378 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.47 37.16 0.31 -0.69 16 2 C -0.07 -0.51 0.77 -154.50 -0.12 -0.63 16 3 C -0.15 -1.02 7.78 37.16 0.29 -0.74 16 4 C -0.10 -0.92 4.73 -26.73 -0.13 -1.05 16 5 C -0.09 -0.97 4.94 -26.73 -0.13 -1.10 16 6 C -0.42 -4.80 2.71 -26.73 -0.07 -4.87 16 7 S 1.22 18.06 12.65 -107.50 -1.36 16.70 16 8 O -0.84 -18.30 18.14 -35.23 -0.64 -18.94 16 9 C -0.35 -5.87 5.44 36.01 0.20 -5.67 16 10 C -0.21 -4.45 5.16 -104.33 -0.54 -4.99 16 11 C -0.09 -2.14 9.67 -39.66 -0.38 -2.52 16 12 C -0.16 -4.42 8.70 -38.87 -0.34 -4.75 16 13 C 0.11 3.00 5.57 -106.83 -0.60 2.41 16 14 C -0.46 -12.10 9.06 -37.74 -0.34 -12.45 16 15 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 16 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 17 N -0.79 -20.67 10.95 55.55 0.61 -20.06 16 18 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 23 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 24 C -0.10 -0.86 4.68 -26.73 -0.13 -0.98 16 25 C -0.10 -0.87 4.73 -26.73 -0.13 -1.00 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.46 4.81 -51.93 -0.25 0.21 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 1.41 6.84 -51.92 -0.36 1.06 16 38 H 0.07 1.28 8.08 -51.92 -0.42 0.86 16 39 H 0.08 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.12 3.30 6.16 -52.49 -0.32 2.98 16 41 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 42 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.08 0.57 6.43 -51.93 -0.33 0.24 16 45 H 0.07 0.61 6.51 -51.93 -0.34 0.27 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -32.32 374.87 -11.55 -43.87 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.82 Total: 4.22 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: -2.95 Total: -45.11 kcal Atomic # 7 Polarization: -20.67 SS G_CDS: 0.61 Total: -20.06 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.64 Total: -18.94 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 18.06 SS G_CDS: -1.36 Total: 16.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.32 -11.55 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346085822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.709 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds