Wall clock time and date at job start Tue Mar 31 2020 12:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47579 * 2 1 4 4 C 1.53010 * 109.46909 * 119.99870 * 2 1 3 5 5 C 1.52998 * 109.46909 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47021 * 299.99668 * 5 4 2 7 7 S 1.81402 * 109.47083 * 180.02562 * 6 5 4 8 8 O 1.42111 * 109.46871 * 68.61315 * 7 6 5 9 9 C 1.81401 * 103.00444 * 185.00090 * 7 6 5 10 10 C 1.50700 * 109.47180 * 180.02562 * 9 7 6 11 11 C 1.38630 * 119.74498 * 90.00202 * 10 9 7 12 12 C 1.37623 * 120.24117 * 180.22751 * 11 10 9 13 13 C 1.40707 * 119.74849 * 359.52215 * 12 11 10 14 14 C 1.41400 * 120.24843 * 180.22492 * 13 12 11 15 15 H 1.07994 * 120.00480 * 204.52708 * 14 13 12 16 16 C 1.39950 * 119.99509 * 24.53120 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.72383 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.72017 * 16 14 13 19 19 H 1.48499 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99981 * 18 16 14 21 21 H 1.48490 * 109.47155 * 239.99623 * 18 16 14 22 22 C 1.40715 * 119.51064 * 0.47652 * 13 12 11 23 23 C 1.37618 * 119.74364 * 359.74989 * 22 13 12 24 24 C 1.53003 * 109.47226 * 60.00543 * 6 5 4 25 25 C 1.52992 * 109.46903 * 299.99892 * 24 6 5 26 26 H 1.08993 * 109.47397 * 300.00543 * 1 2 3 27 27 H 1.09005 * 109.46528 * 60.00391 * 1 2 3 28 28 H 1.08997 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47170 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46421 * 299.99594 * 3 2 1 31 31 H 1.08993 * 109.47199 * 59.99336 * 3 2 1 32 32 H 1.08997 * 109.46820 * 60.00220 * 4 2 1 33 33 H 1.08993 * 109.46753 * 299.99981 * 4 2 1 34 34 H 1.08999 * 109.46678 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47296 * 59.99930 * 5 4 2 36 36 H 1.08994 * 109.47299 * 300.00260 * 6 5 4 37 37 H 1.09000 * 109.46892 * 59.99934 * 9 7 6 38 38 H 1.09003 * 109.46654 * 300.00269 * 9 7 6 39 39 H 1.08001 * 119.88189 * 359.95744 * 11 10 9 40 40 H 1.08002 * 120.12205 * 179.72192 * 12 11 10 41 41 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.12804 * 179.73261 * 22 13 12 43 43 H 1.08002 * 119.87235 * 180.02562 * 23 22 13 44 44 H 1.09007 * 109.46873 * 59.99509 * 24 6 5 45 45 H 1.08993 * 109.46972 * 179.97438 * 24 6 5 46 46 H 1.09004 * 109.47140 * 300.00036 * 25 24 6 47 47 H 1.08996 * 109.47289 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4436 -0.0002 7 16 5.8934 -1.4449 -0.0002 8 8 6.3664 -2.2813 1.0468 9 6 6.3010 -2.1923 -1.6020 10 6 7.7984 -2.2657 -1.7556 11 6 8.4805 -3.3901 -1.3171 12 6 9.8483 -3.4660 -1.4480 13 6 10.5533 -2.4011 -2.0387 14 6 11.9582 -2.4699 -2.1829 15 1 12.5392 -1.5622 -2.2519 16 6 12.5959 -3.7146 -2.2362 17 7 11.9044 -4.7931 -2.5009 18 14 14.4346 -3.8358 -1.9295 19 1 14.9806 -2.4828 -1.6533 20 1 14.6844 -4.7178 -0.7612 21 1 15.1002 -4.4034 -3.1294 22 6 9.8504 -1.2648 -2.4801 23 6 8.4831 -1.2086 -2.3348 24 6 3.5695 -0.7223 -1.2495 25 6 2.0396 -0.7217 -1.2492 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1392 34 1 3.9332 -1.2361 2.1388 35 1 3.9337 0.3056 1.2488 36 1 3.7157 -2.4710 0.0001 37 1 5.8826 -1.5839 -2.4038 38 1 5.8813 -3.1970 -1.6514 39 1 7.9369 -4.2077 -0.8671 40 1 10.3783 -4.3410 -1.1017 41 1 12.3464 -5.6558 -2.5374 42 1 10.3820 -0.4398 -2.9310 43 1 7.9415 -0.3376 -2.6732 44 1 3.9333 0.3052 -1.2497 45 1 3.9328 -1.2362 -2.1393 46 1 1.6758 -1.7492 -1.2489 47 1 1.6763 -0.2083 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346085822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:04 Heat of formation + Delta-G solvation = -74.523272 kcal Electronic energy + Delta-G solvation = -24433.306811 eV Core-core repulsion = 21090.878250 eV Total energy + Delta-G solvation = -3342.428561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25035 -39.47222 -36.72618 -35.84308 -34.18417 -33.04308 -31.70178 -31.19313 -29.29054 -28.04911 -27.34951 -25.77111 -23.58624 -22.90964 -22.36017 -21.77378 -19.30793 -19.23347 -18.31786 -17.24176 -16.89848 -16.29222 -15.98798 -15.72935 -15.67854 -15.63860 -15.31603 -14.94865 -14.64416 -14.36236 -14.14120 -13.85834 -13.77899 -13.56243 -13.45635 -13.18771 -13.03126 -12.81349 -12.69110 -12.57526 -12.50628 -12.42155 -12.24375 -12.21976 -11.90278 -11.82760 -11.58996 -11.43572 -11.29121 -11.07588 -11.02500 -10.81559 -10.65447 -9.42750 -9.29928 -8.92151 -8.65167 -6.33305 0.44368 1.07867 1.13557 1.36167 1.50928 1.52863 1.87701 2.18616 2.72536 2.94913 3.70524 3.73706 3.74142 3.96669 4.07423 4.10510 4.22371 4.27719 4.44553 4.47556 4.51757 4.59171 4.65454 4.69699 4.79902 4.87056 4.90547 4.95419 5.00940 5.06924 5.12776 5.14006 5.14710 5.17685 5.26337 5.28815 5.32001 5.34895 5.40583 5.42605 5.57281 5.57711 5.68382 5.77141 5.93978 6.09741 6.17951 6.36040 6.68942 6.91761 7.02639 8.30796 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.002449 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.668306 B =11428.276071 C =11591.151031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.149 4.149 4 C -0.100 4.100 5 C -0.099 4.099 6 C -0.398 4.398 7 S 1.259 4.741 8 O -0.921 6.921 9 C -0.360 4.360 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.195 4.195 13 C 0.077 3.923 14 C -0.495 4.495 15 H 0.084 0.916 16 C 0.028 3.972 17 N -0.830 5.830 18 Si 0.984 3.016 19 H -0.251 1.251 20 H -0.270 1.270 21 H -0.264 1.264 22 C -0.234 4.234 23 C -0.074 4.074 24 C -0.100 4.100 25 C -0.104 4.104 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.158 0.842 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.286 0.714 42 H 0.114 0.886 43 H 0.155 0.845 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.980 13.791 1.190 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.206 4.206 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.517 4.517 7 S 1.465 4.535 8 O -0.917 6.917 9 C -0.497 4.497 10 C -0.198 4.198 11 C -0.130 4.130 12 C -0.215 4.215 13 C 0.074 3.926 14 C -0.525 4.525 15 H 0.102 0.898 16 C -0.186 4.186 17 N -0.456 5.456 18 Si 0.804 3.196 19 H -0.175 1.175 20 H -0.195 1.195 21 H -0.188 1.188 22 C -0.254 4.254 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.143 4.143 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.173 0.827 44 H 0.127 0.873 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.348 13.838 1.897 23.863 hybrid contribution 0.125 -3.532 0.231 3.542 sum -19.223 10.306 2.128 21.915 Atomic orbital electron populations 1.21857 0.94424 1.01292 1.02217 1.20538 0.95308 0.96300 0.94300 1.22025 1.02292 0.94015 1.02247 1.21554 0.93896 0.99915 0.98554 1.21295 0.97064 1.01489 0.93881 1.27446 1.17692 1.03754 1.02836 1.69437 0.86152 1.15260 0.82603 1.93001 1.75783 1.72568 1.50316 1.26268 0.97325 1.08667 1.17466 1.18744 0.92960 0.96626 1.11485 1.20727 0.94550 0.97405 1.00273 1.21205 0.93494 1.01179 1.05645 1.18039 0.94080 0.91927 0.88561 1.19940 0.92729 0.93880 1.45917 0.89799 1.26885 1.05913 0.94583 0.91218 1.69917 1.40513 1.00657 1.34549 0.85134 0.75872 0.79784 0.78774 1.17462 1.19547 1.18839 1.21324 0.94822 1.00194 1.09055 1.20925 0.93530 0.97610 0.97179 1.21471 0.96375 1.02271 0.93682 1.21588 0.94847 0.99888 0.97976 0.92419 0.91810 0.93665 0.90939 0.91708 0.92560 0.93757 0.90991 0.94186 0.88022 0.91700 0.82401 0.91762 0.91034 0.89175 0.90359 0.86827 0.82733 0.87289 0.90442 0.93618 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.47 71.98 0.61 -0.97 16 2 C -0.06 -0.79 0.77 -52.18 -0.04 -0.83 16 3 C -0.15 -1.41 7.78 71.98 0.56 -0.85 16 4 C -0.10 -1.59 4.73 30.60 0.14 -1.45 16 5 C -0.10 -1.85 4.94 30.59 0.15 -1.70 16 6 C -0.40 -8.21 2.71 30.60 0.08 -8.13 16 7 S 1.26 35.34 12.65 -56.49 -0.71 34.62 16 8 O -0.92 -40.83 18.14 -148.98 -2.70 -43.54 16 9 C -0.36 -11.04 5.44 71.24 0.39 -10.65 16 10 C -0.20 -8.25 5.16 -19.68 -0.10 -8.35 16 11 C -0.11 -5.73 9.67 22.22 0.21 -5.52 16 12 C -0.20 -11.24 8.70 22.73 0.20 -11.04 16 13 C 0.08 4.25 5.57 -21.29 -0.12 4.13 16 14 C -0.50 -27.24 9.06 23.46 0.21 -27.03 16 15 H 0.08 4.35 7.91 -2.91 -0.02 4.33 16 16 C 0.03 1.48 5.14 85.26 0.44 1.92 16 17 N -0.83 -45.91 10.95 21.83 0.24 -45.67 16 18 Si 0.98 39.51 29.59 68.60 2.03 41.54 16 19 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.23 -10.99 9.80 22.73 0.22 -10.77 16 23 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 24 C -0.10 -1.35 4.68 30.59 0.14 -1.21 16 25 C -0.10 -1.35 4.73 30.59 0.14 -1.21 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.60 4.81 -2.39 -0.01 0.59 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.39 6.43 -2.39 -0.02 1.37 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.16 3.25 6.84 -2.39 -0.02 3.23 16 38 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 39 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.09 5.53 6.16 -2.91 -0.02 5.51 16 41 H 0.29 14.33 8.30 -92.70 -0.77 13.56 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.16 4.21 8.06 -2.91 -0.02 4.18 16 44 H 0.11 0.90 6.43 -2.38 -0.02 0.89 16 45 H 0.08 0.97 6.51 -2.39 -0.02 0.95 16 46 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -77.13 374.87 3.25 -73.88 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.93 Total: 25.49 kcal Atomic # 6 Polarization: -89.78 SS G_CDS: 3.46 Total: -86.32 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.24 Total: -45.67 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -2.70 Total: -43.54 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 35.34 SS G_CDS: -0.71 Total: 34.62 kcal Total: -77.13 3.25 -73.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346085822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.646 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds