Wall clock time and date at job start Tue Mar 31 2020 12:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.52997 * 109.46917 * 119.99977 * 2 1 3 5 5 C 1.52999 * 109.47140 * 179.97438 * 4 2 1 6 6 C 1.52990 * 109.47228 * 300.00078 * 5 4 2 7 7 S 1.81406 * 109.47295 * 179.97438 * 6 5 4 8 8 O 1.42099 * 109.46661 * 301.38980 * 7 6 5 9 9 C 1.81401 * 102.99917 * 185.00043 * 7 6 5 10 10 C 1.50699 * 109.46915 * 180.02562 * 9 7 6 11 11 C 1.38636 * 119.75289 * 89.99596 * 10 9 7 12 12 C 1.37615 * 120.25185 * 179.70401 * 11 10 9 13 13 C 1.40720 * 119.74367 * 0.27407 * 12 11 10 14 14 C 1.41400 * 120.24537 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99966 * 204.38968 * 14 13 12 16 16 C 1.39950 * 119.99539 * 24.39535 * 14 13 12 17 17 N 1.30819 * 120.00082 * 17.85436 * 16 14 13 18 18 Si 1.86800 * 119.99528 * 197.85557 * 16 14 13 19 19 H 1.48492 * 109.47384 * 59.99611 * 18 16 14 20 20 H 1.48500 * 109.46729 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46863 * 299.99545 * 18 16 14 22 22 C 1.40718 * 119.51008 * 0.02562 * 13 12 11 23 23 C 1.37614 * 119.74514 * 359.97438 * 22 13 12 24 24 C 1.53003 * 109.47424 * 59.99856 * 6 5 4 25 25 C 1.52999 * 109.47036 * 300.00262 * 24 6 5 26 26 H 1.08993 * 109.47132 * 300.00260 * 1 2 3 27 27 H 1.09000 * 109.47014 * 60.00104 * 1 2 3 28 28 H 1.08998 * 109.46949 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47123 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47099 * 299.99845 * 3 2 1 31 31 H 1.08993 * 109.47337 * 59.99866 * 3 2 1 32 32 H 1.09004 * 109.47439 * 59.99838 * 4 2 1 33 33 H 1.09003 * 109.47174 * 299.99748 * 4 2 1 34 34 H 1.09000 * 109.47237 * 179.97438 * 5 4 2 35 35 H 1.09007 * 109.46815 * 60.00254 * 5 4 2 36 36 H 1.08998 * 109.47553 * 299.99763 * 6 5 4 37 37 H 1.08995 * 109.47166 * 59.99909 * 9 7 6 38 38 H 1.09000 * 109.47273 * 299.99390 * 9 7 6 39 39 H 1.08001 * 119.87542 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.13427 * 180.30023 * 12 11 10 41 41 H 0.97001 * 119.99459 * 180.02562 * 17 16 14 42 42 H 1.08006 * 120.12519 * 180.02562 * 22 13 12 43 43 H 1.08007 * 119.87423 * 180.02562 * 23 22 13 44 44 H 1.09007 * 109.46863 * 59.99674 * 24 6 5 45 45 H 1.08993 * 109.47326 * 180.02562 * 24 6 5 46 46 H 1.09004 * 109.46909 * 299.99965 * 25 24 6 47 47 H 1.09000 * 109.47237 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 16 5.8935 -1.4434 -0.0009 8 8 6.3671 -0.1041 0.0310 9 6 6.3009 -2.1909 -1.6028 10 6 7.7982 -2.2633 -1.7570 11 6 8.4815 -3.3871 -1.3184 12 6 9.8481 -3.4667 -1.4597 13 6 10.5526 -2.3993 -2.0467 14 6 11.9567 -2.4700 -2.1976 15 1 12.5389 -1.5630 -2.2655 16 6 12.5919 -3.7156 -2.2589 17 7 11.8977 -4.7914 -2.5274 18 14 14.4311 -3.8418 -1.9574 19 1 14.7442 -3.3461 -0.5931 20 1 14.8565 -5.2593 -2.0794 21 1 15.1547 -3.0202 -2.9608 22 6 9.8494 -1.2609 -2.4824 23 6 8.4828 -1.2032 -2.3310 24 6 3.5695 -0.7222 -1.2495 25 6 2.0396 -0.7216 -1.2492 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1392 34 1 3.9333 -1.2353 2.1392 35 1 3.9337 0.3058 1.2488 36 1 3.7158 -2.4709 0.0000 37 1 5.8817 -1.5830 -2.4045 38 1 5.8820 -3.1960 -1.6518 39 1 7.9387 -4.2051 -0.8682 40 1 10.3778 -4.3450 -1.1218 41 1 12.3380 -5.6547 -2.5695 42 1 10.3801 -0.4361 -2.9347 43 1 7.9409 -0.3306 -2.6651 44 1 3.9332 0.3054 -1.2497 45 1 3.9322 -1.2365 -2.1394 46 1 1.6759 -1.7492 -1.2490 47 1 1.6762 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346085860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:07 Heat of formation + Delta-G solvation = -56.254860 kcal Electronic energy + Delta-G solvation = -24505.806939 eV Core-core repulsion = 21164.170555 eV Total energy + Delta-G solvation = -3341.636383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.54001 -37.62410 -35.16680 -34.00308 -33.40665 -31.40397 -30.84397 -29.31201 -27.59466 -27.50969 -26.57526 -24.05180 -22.79595 -21.39729 -21.02964 -20.02646 -18.55530 -17.32447 -17.16705 -15.86011 -15.36910 -15.20937 -15.00596 -14.66558 -14.31563 -14.13743 -13.93560 -13.73357 -13.50250 -13.28564 -12.82938 -12.50255 -12.49686 -12.34621 -12.07910 -11.97391 -11.92671 -11.63359 -11.57268 -11.39988 -11.21601 -11.16624 -11.09516 -11.06068 -10.73274 -10.63501 -10.42926 -10.31260 -10.12433 -9.75138 -9.48943 -9.40820 -9.09768 -7.87379 -7.48758 -7.18980 -6.80128 -4.37006 1.82051 2.77796 3.04000 3.05082 3.06234 3.09093 3.29357 3.90549 4.20955 4.41834 4.52369 4.59355 4.63680 4.88633 4.95356 5.19335 5.22371 5.37069 5.38989 5.45366 5.48196 5.56832 5.59888 5.64839 5.66858 5.71706 5.74439 5.75659 5.86767 5.89369 5.92777 6.03685 6.08902 6.20097 6.21055 6.30118 6.34757 6.39125 6.41359 6.92581 7.03840 7.23450 7.32595 7.57897 7.82153 8.01686 8.05126 8.26405 8.59716 8.85618 8.93550 10.13666 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.002436 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.602193 B =11493.442402 C =11548.266435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.097 4.097 6 C -0.419 4.419 7 S 1.220 4.780 8 O -0.841 6.841 9 C -0.355 4.355 10 C -0.206 4.206 11 C -0.093 4.093 12 C -0.166 4.166 13 C 0.113 3.887 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.790 5.790 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.224 4.224 23 C -0.074 4.074 24 C -0.116 4.116 25 C -0.102 4.102 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.282 0.718 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.012 1.240 6.798 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.205 4.205 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.534 4.534 7 S 1.422 4.578 8 O -0.836 6.836 9 C -0.492 4.492 10 C -0.209 4.209 11 C -0.112 4.112 12 C -0.185 4.185 13 C 0.110 3.890 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.415 5.415 18 Si 0.733 3.267 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.244 4.244 23 C -0.093 4.093 24 C -0.153 4.153 25 C -0.140 4.140 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.427 1.346 7.485 19.014 hybrid contribution -0.081 1.001 -1.862 2.116 sum -17.507 2.347 5.622 18.537 Atomic orbital electron populations 1.21864 0.94873 1.01531 1.01496 1.20527 0.94833 0.95604 0.95608 1.21996 1.01990 0.95264 1.01239 1.21546 0.95302 1.00295 0.96829 1.21225 0.95813 1.00825 0.95665 1.27759 1.21841 1.04653 0.99187 1.70526 0.84256 1.00361 1.02639 1.93093 1.72194 1.36099 1.82240 1.26146 1.00677 1.07797 1.14623 1.18273 0.90210 0.98078 1.14384 1.20544 0.94846 0.95582 1.00266 1.21313 0.92676 1.00897 1.03617 1.17659 0.93194 0.90702 0.87451 1.19610 0.92319 0.93022 1.43877 0.90393 1.25929 1.00942 0.95283 0.92073 1.69814 1.38506 1.00056 1.33142 0.86352 0.82089 0.77973 0.80250 1.18710 1.20289 1.19017 1.20964 0.93174 1.00799 1.09485 1.20390 0.94487 0.95980 0.98491 1.21637 0.96483 1.00888 0.96337 1.21548 0.95373 1.00224 0.96881 0.92808 0.92897 0.92759 0.91719 0.93054 0.92912 0.91837 0.92086 0.91154 0.91269 0.86640 0.90567 0.87549 0.88742 0.86126 0.90724 0.88984 0.89820 0.91430 0.91711 0.91913 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.47 37.16 0.31 -0.79 16 2 C -0.07 -0.61 0.77 -154.51 -0.12 -0.73 16 3 C -0.15 -1.51 7.78 37.16 0.29 -1.22 16 4 C -0.10 -0.91 4.73 -26.73 -0.13 -1.03 16 5 C -0.10 -1.01 4.93 -26.74 -0.13 -1.15 16 6 C -0.42 -4.61 2.71 -26.73 -0.07 -4.69 16 7 S 1.22 17.53 12.65 -107.50 -1.36 16.17 16 8 O -0.84 -17.28 18.13 -35.23 -0.64 -17.92 16 9 C -0.35 -5.79 5.44 36.01 0.20 -5.59 16 10 C -0.21 -4.42 5.16 -104.33 -0.54 -4.96 16 11 C -0.09 -2.04 9.67 -39.66 -0.38 -2.42 16 12 C -0.17 -4.18 8.70 -38.87 -0.34 -4.51 16 13 C 0.11 3.02 5.58 -106.82 -0.60 2.42 16 14 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 16 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.79 -19.94 10.95 55.55 0.61 -19.34 16 18 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.22 -5.74 9.80 -38.87 -0.38 -6.12 16 23 C -0.07 -1.76 9.67 -39.66 -0.38 -2.15 16 24 C -0.12 -1.39 4.68 -26.73 -0.13 -1.51 16 25 C -0.10 -1.02 4.73 -26.73 -0.13 -1.15 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.79 4.81 -51.93 -0.25 0.54 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 36 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.27 6.84 -51.93 -0.36 0.91 16 38 H 0.11 1.42 8.08 -51.92 -0.42 1.00 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 41 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 42 H 0.09 2.25 8.06 -52.48 -0.42 1.82 16 43 H 0.08 1.91 8.06 -52.48 -0.42 1.49 16 44 H 0.07 0.95 6.43 -51.93 -0.33 0.62 16 45 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -31.25 374.84 -11.55 -42.79 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.82 Total: 5.56 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: -2.95 Total: -46.29 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.61 Total: -19.34 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.64 Total: -17.92 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 17.53 SS G_CDS: -1.36 Total: 16.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.25 -11.55 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346085860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.460 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds