Wall clock time and date at job start Tue Mar 31 2020 12:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.52997 * 109.46917 * 119.99977 * 2 1 3 5 5 C 1.52999 * 109.47140 * 179.97438 * 4 2 1 6 6 C 1.52990 * 109.47228 * 300.00078 * 5 4 2 7 7 S 1.81406 * 109.47295 * 179.97438 * 6 5 4 8 8 O 1.42099 * 109.46661 * 301.38980 * 7 6 5 9 9 C 1.81401 * 102.99917 * 185.00043 * 7 6 5 10 10 C 1.50699 * 109.46915 * 180.02562 * 9 7 6 11 11 C 1.38636 * 119.75289 * 89.99596 * 10 9 7 12 12 C 1.37615 * 120.25185 * 179.70401 * 11 10 9 13 13 C 1.40720 * 119.74367 * 0.27407 * 12 11 10 14 14 C 1.41400 * 120.24537 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99966 * 204.38968 * 14 13 12 16 16 C 1.39950 * 119.99539 * 24.39535 * 14 13 12 17 17 N 1.30819 * 120.00082 * 17.85436 * 16 14 13 18 18 Si 1.86800 * 119.99528 * 197.85557 * 16 14 13 19 19 H 1.48492 * 109.47384 * 59.99611 * 18 16 14 20 20 H 1.48500 * 109.46729 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46863 * 299.99545 * 18 16 14 22 22 C 1.40718 * 119.51008 * 0.02562 * 13 12 11 23 23 C 1.37614 * 119.74514 * 359.97438 * 22 13 12 24 24 C 1.53003 * 109.47424 * 59.99856 * 6 5 4 25 25 C 1.52999 * 109.47036 * 300.00262 * 24 6 5 26 26 H 1.08993 * 109.47132 * 300.00260 * 1 2 3 27 27 H 1.09000 * 109.47014 * 60.00104 * 1 2 3 28 28 H 1.08998 * 109.46949 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47123 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47099 * 299.99845 * 3 2 1 31 31 H 1.08993 * 109.47337 * 59.99866 * 3 2 1 32 32 H 1.09004 * 109.47439 * 59.99838 * 4 2 1 33 33 H 1.09003 * 109.47174 * 299.99748 * 4 2 1 34 34 H 1.09000 * 109.47237 * 179.97438 * 5 4 2 35 35 H 1.09007 * 109.46815 * 60.00254 * 5 4 2 36 36 H 1.08998 * 109.47553 * 299.99763 * 6 5 4 37 37 H 1.08995 * 109.47166 * 59.99909 * 9 7 6 38 38 H 1.09000 * 109.47273 * 299.99390 * 9 7 6 39 39 H 1.08001 * 119.87542 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.13427 * 180.30023 * 12 11 10 41 41 H 0.97001 * 119.99459 * 180.02562 * 17 16 14 42 42 H 1.08006 * 120.12519 * 180.02562 * 22 13 12 43 43 H 1.08007 * 119.87423 * 180.02562 * 23 22 13 44 44 H 1.09007 * 109.46863 * 59.99674 * 24 6 5 45 45 H 1.08993 * 109.47326 * 180.02562 * 24 6 5 46 46 H 1.09004 * 109.46909 * 299.99965 * 25 24 6 47 47 H 1.09000 * 109.47237 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 16 5.8935 -1.4434 -0.0009 8 8 6.3671 -0.1041 0.0310 9 6 6.3009 -2.1909 -1.6028 10 6 7.7982 -2.2633 -1.7570 11 6 8.4815 -3.3871 -1.3184 12 6 9.8481 -3.4667 -1.4597 13 6 10.5526 -2.3993 -2.0467 14 6 11.9567 -2.4700 -2.1976 15 1 12.5389 -1.5630 -2.2655 16 6 12.5919 -3.7156 -2.2589 17 7 11.8977 -4.7914 -2.5274 18 14 14.4311 -3.8418 -1.9574 19 1 14.7442 -3.3461 -0.5931 20 1 14.8565 -5.2593 -2.0794 21 1 15.1547 -3.0202 -2.9608 22 6 9.8494 -1.2609 -2.4824 23 6 8.4828 -1.2032 -2.3310 24 6 3.5695 -0.7222 -1.2495 25 6 2.0396 -0.7216 -1.2492 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1392 34 1 3.9333 -1.2353 2.1392 35 1 3.9337 0.3058 1.2488 36 1 3.7158 -2.4709 0.0000 37 1 5.8817 -1.5830 -2.4045 38 1 5.8820 -3.1960 -1.6518 39 1 7.9387 -4.2051 -0.8682 40 1 10.3778 -4.3450 -1.1218 41 1 12.3380 -5.6547 -2.5695 42 1 10.3801 -0.4361 -2.9347 43 1 7.9409 -0.3306 -2.6651 44 1 3.9332 0.3054 -1.2497 45 1 3.9322 -1.2365 -2.1394 46 1 1.6759 -1.7492 -1.2490 47 1 1.6762 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346085860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:07 Heat of formation + Delta-G solvation = -72.917141 kcal Electronic energy + Delta-G solvation = -24506.529470 eV Core-core repulsion = 21164.170555 eV Total energy + Delta-G solvation = -3342.358914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32787 -39.47230 -36.60978 -35.83381 -34.24279 -33.03186 -31.78993 -31.18497 -29.27672 -28.26655 -27.37608 -25.75335 -23.68812 -22.90984 -22.32305 -21.75780 -19.33037 -19.23772 -18.38526 -17.20792 -16.88727 -16.22197 -16.10458 -15.78575 -15.76382 -15.64591 -15.30679 -14.94999 -14.54519 -14.36386 -14.17216 -13.93605 -13.78339 -13.58855 -13.37906 -13.17591 -12.97996 -12.91756 -12.85800 -12.67254 -12.60671 -12.39131 -12.27650 -12.18876 -11.95979 -11.92828 -11.64272 -11.45979 -11.28641 -11.12848 -11.06674 -10.90546 -10.66690 -9.38020 -9.29965 -8.84970 -8.63622 -6.32926 0.51722 1.07664 1.17066 1.39104 1.49924 1.57007 1.93894 2.21768 2.72895 3.01849 3.62212 3.71412 3.73446 3.88392 4.06263 4.09743 4.14151 4.29645 4.37475 4.45346 4.47736 4.56100 4.58599 4.60020 4.71902 4.76371 4.83620 4.92179 4.94922 5.00212 5.01985 5.04707 5.08840 5.14986 5.15048 5.17459 5.22292 5.31839 5.34413 5.44719 5.47935 5.49028 5.60265 5.67996 5.95625 6.07943 6.17259 6.37812 6.68076 6.92645 7.01511 8.32231 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.002436 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.602193 B =11493.442402 C =11548.266435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.148 4.148 4 C -0.097 4.097 5 C -0.103 4.103 6 C -0.401 4.401 7 S 1.258 4.742 8 O -0.911 6.911 9 C -0.362 4.362 10 C -0.193 4.193 11 C -0.088 4.088 12 C -0.186 4.186 13 C 0.079 3.921 14 C -0.503 4.503 15 H 0.068 0.932 16 C 0.039 3.961 17 N -0.818 5.818 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.265 1.265 22 C -0.251 4.251 23 C -0.094 4.094 24 C -0.121 4.121 25 C -0.099 4.099 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.160 0.840 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.291 0.709 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.825 -1.158 8.147 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.136 4.136 5 C -0.142 4.142 6 C -0.519 4.519 7 S 1.463 4.537 8 O -0.906 6.906 9 C -0.499 4.499 10 C -0.195 4.195 11 C -0.108 4.108 12 C -0.205 4.205 13 C 0.077 3.923 14 C -0.532 4.532 15 H 0.086 0.914 16 C -0.177 4.177 17 N -0.443 5.443 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.189 1.189 22 C -0.271 4.271 23 C -0.114 4.114 24 C -0.159 4.159 25 C -0.137 4.137 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.178 0.822 37 H 0.091 0.909 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.200 -1.051 8.810 22.062 hybrid contribution 0.492 1.827 -2.263 2.950 sum -19.708 0.776 6.547 20.781 Atomic orbital electron populations 1.21819 0.93337 1.02431 1.01768 1.20571 0.96003 0.94498 0.95687 1.21994 1.00275 0.96743 1.01492 1.21550 0.93584 1.01604 0.96824 1.21321 0.97381 0.99404 0.96086 1.27615 1.17675 1.07267 0.99305 1.69634 0.86409 0.97923 0.99751 1.93002 1.75650 1.39238 1.82738 1.26264 0.97005 1.10697 1.15922 1.18747 0.93137 0.96474 1.11156 1.20988 0.93828 0.96820 0.99118 1.21401 0.94317 1.00350 1.04452 1.17999 0.93953 0.91716 0.88664 1.19795 0.92781 0.93834 1.46803 0.91361 1.26707 1.05604 0.94297 0.91089 1.69835 1.40504 1.00660 1.33311 0.85262 0.75947 0.78628 0.79910 1.18489 1.18518 1.18922 1.21089 0.94265 1.00940 1.10826 1.20619 0.94047 0.97186 0.99514 1.21667 0.98354 0.99177 0.96706 1.21548 0.93469 1.01484 0.97208 0.92244 0.93052 0.91493 0.94332 0.93267 0.92231 0.89652 0.91200 0.88898 0.94146 0.82222 0.90943 0.83165 0.83983 0.86926 0.89788 0.89782 0.89813 0.94633 0.91733 0.89889 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.47 71.98 0.61 -1.07 16 2 C -0.07 -1.07 0.77 -52.18 -0.04 -1.11 16 3 C -0.15 -2.93 7.78 71.98 0.56 -2.37 16 4 C -0.10 -1.36 4.73 30.59 0.14 -1.21 16 5 C -0.10 -1.87 4.93 30.59 0.15 -1.72 16 6 C -0.40 -7.45 2.71 30.59 0.08 -7.37 16 7 S 1.26 33.93 12.65 -56.49 -0.71 33.22 16 8 O -0.91 -38.16 18.13 -148.98 -2.70 -40.86 16 9 C -0.36 -10.92 5.44 71.24 0.39 -10.53 16 10 C -0.19 -8.12 5.16 -19.67 -0.10 -8.23 16 11 C -0.09 -3.77 9.67 22.22 0.21 -3.55 16 12 C -0.19 -9.55 8.70 22.73 0.20 -9.36 16 13 C 0.08 4.46 5.58 -21.29 -0.12 4.34 16 14 C -0.50 -28.09 9.05 23.46 0.21 -27.88 16 15 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 16 C 0.04 1.96 5.14 85.26 0.44 2.40 16 17 N -0.82 -41.98 10.95 21.83 0.24 -41.74 16 18 Si 0.98 38.32 29.60 68.60 2.03 40.36 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 22 C -0.25 -13.67 9.80 22.73 0.22 -13.45 16 23 C -0.09 -4.65 9.67 22.22 0.21 -4.44 16 24 C -0.12 -2.67 4.68 30.59 0.14 -2.52 16 25 C -0.10 -1.68 4.73 30.59 0.14 -1.53 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.04 0.96 4.81 -2.39 -0.01 0.95 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 0.98 6.43 -2.38 -0.02 0.97 16 36 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.29 6.84 -2.39 -0.02 2.27 16 38 H 0.15 3.22 8.08 -2.39 -0.02 3.20 16 39 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 41 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 42 H 0.08 4.48 8.06 -2.91 -0.02 4.46 16 43 H 0.08 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.03 1.01 6.43 -2.38 -0.02 1.00 16 45 H 0.06 1.41 6.51 -2.39 -0.02 1.39 16 46 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.66 374.84 3.25 -70.41 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.93 Total: 28.22 kcal Atomic # 6 Polarization: -93.07 SS G_CDS: 3.46 Total: -89.60 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.24 Total: -41.74 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -2.70 Total: -40.86 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 16 Polarization: 33.93 SS G_CDS: -0.71 Total: 33.22 kcal Total: -73.66 3.25 -70.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346085860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.505 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds