Wall clock time and date at job start Tue Mar 31 2020 13:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.53005 * 109.46889 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75322 * 125.00179 * 5 4 3 7 7 C 1.38045 * 107.41791 * 180.02562 * 6 5 4 8 8 C 1.47420 * 126.41887 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00247 * 135.16513 * 8 7 6 10 10 N 1.34775 * 120.00075 * 315.17006 * 8 7 6 11 11 C 1.46502 * 120.00060 * 4.00647 * 10 8 7 12 12 C 1.50697 * 109.46853 * 93.79437 * 11 10 8 13 13 H 1.07999 * 120.00313 * 359.97438 * 12 11 10 14 14 C 1.37886 * 120.00125 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99411 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47074 * 59.99857 * 16 14 12 18 18 H 1.48504 * 109.47014 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46999 * 300.00011 * 16 14 12 20 20 C 1.46499 * 120.00306 * 184.01127 * 10 8 7 21 21 C 1.52996 * 109.47500 * 85.24039 * 20 10 8 22 22 C 1.47200 * 109.47551 * 180.02562 * 21 20 10 23 23 N 9.01699 * 139.02721 * 230.03476 * 5 1 2 24 24 C 1.41294 * 107.17006 * 359.97438 * 7 6 5 25 25 C 1.50698 * 125.99079 * 180.02562 * 24 7 6 26 26 N 1.30453 * 108.02191 * 359.71832 * 24 7 6 27 27 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47098 * 300.00330 * 1 2 3 29 29 H 1.09004 * 109.47082 * 60.00147 * 1 2 3 30 30 H 1.09003 * 109.46947 * 299.99314 * 3 2 1 31 31 H 1.08997 * 109.47471 * 60.00106 * 3 2 1 32 32 H 1.09003 * 109.46663 * 299.99362 * 4 3 2 33 33 H 1.08999 * 109.47430 * 59.99345 * 4 3 2 34 34 H 1.08003 * 126.29187 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.47352 * 213.79226 * 11 10 8 36 36 H 1.09001 * 109.46728 * 333.79922 * 11 10 8 37 37 H 0.97001 * 119.99149 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47583 * 205.24607 * 20 10 8 39 39 H 1.09000 * 109.46676 * 325.24407 * 20 10 8 40 40 H 1.08999 * 109.47527 * 300.00818 * 21 20 10 41 41 H 1.09011 * 109.47002 * 60.00005 * 21 20 10 42 42 H 1.09000 * 109.46905 * 90.00031 * 25 24 7 43 43 H 1.09002 * 109.46868 * 209.99466 * 25 24 7 44 44 H 1.09001 * 109.47014 * 329.99474 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0218 2.9857 0.8907 7 6 5.3266 4.2842 0.5349 8 6 6.2618 5.1860 1.2315 9 8 7.0586 5.8467 0.5933 10 7 6.2338 5.2781 2.5758 11 6 5.3355 4.4184 3.3505 12 6 6.0759 3.1796 3.7842 13 1 7.1119 3.0459 3.5100 14 6 5.4305 2.2164 4.5304 15 7 4.1687 2.3791 4.8640 16 14 6.3484 0.6812 5.0687 17 1 7.5096 1.0681 5.9097 18 1 5.4378 -0.1903 5.8538 19 1 6.8279 -0.0543 3.8710 20 6 7.1017 6.2381 3.2625 21 6 6.4160 7.6051 3.3063 22 6 7.2883 8.5698 3.9958 23 7 7.9622 9.3146 4.5268 24 6 4.5743 4.5871 -0.6221 25 6 4.5856 5.8965 -1.3681 26 7 3.8733 3.5325 -0.9353 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 3.8574 0.6436 0.8892 33 1 3.8568 0.6438 -0.8908 34 1 5.4248 2.4422 1.7325 35 1 4.9844 4.9584 4.2298 36 1 4.4827 4.1347 2.7337 37 1 3.7146 1.7013 5.3886 38 1 7.2913 5.8940 4.2793 39 1 8.0464 6.3226 2.7254 40 1 6.2264 7.9493 2.2896 41 1 5.4711 7.5206 3.8434 42 1 5.3572 5.8696 -2.1376 43 1 3.6134 6.0575 -1.8340 44 1 4.7943 6.7092 -0.6724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360320228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:31 Heat of formation + Delta-G solvation = 18.547056 kcal Electronic energy + Delta-G solvation = -27243.209984 eV Core-core repulsion = 23390.816792 eV Total energy + Delta-G solvation = -3852.393192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00100 -38.81632 -37.96438 -36.58164 -35.18709 -33.98803 -33.04587 -31.49939 -30.60691 -29.26120 -27.60850 -27.30714 -26.03230 -24.22691 -23.25131 -22.69174 -21.24269 -19.61070 -18.37663 -17.42438 -16.95651 -16.66422 -16.40538 -16.18903 -15.63343 -15.37765 -15.01427 -14.66476 -14.51561 -14.38035 -14.15864 -13.61898 -13.48292 -13.29965 -12.80246 -12.72357 -12.58461 -12.34117 -12.30217 -12.11960 -11.89243 -11.79773 -11.57755 -11.52618 -11.36570 -11.26557 -11.13007 -10.87977 -10.65010 -10.34194 -10.29763 -9.92637 -9.78315 -9.21032 -8.89263 -8.73050 -8.06357 -7.85549 -6.35632 -4.44736 2.16771 2.58353 2.69115 2.89270 2.97267 3.11734 3.19496 3.22343 3.67751 3.77948 3.89604 4.18496 4.43624 4.71817 4.93131 4.94889 5.06894 5.21512 5.26238 5.27953 5.29865 5.33567 5.38803 5.51969 5.60108 5.70587 5.71043 5.73576 5.78208 5.91491 6.09849 6.18493 6.26007 6.30819 6.33693 6.62645 6.91771 6.99293 7.09837 7.34340 7.44317 7.59566 7.73471 7.89864 8.04826 8.23705 8.65280 8.97580 9.23579 10.69133 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.004800 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.269640 B = 5831.645087 C = 7924.411650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.391 6.391 3 C 0.053 3.947 4 C 0.139 3.861 5 N -0.368 5.368 6 C 0.134 3.866 7 C -0.288 4.288 8 C 0.599 3.401 9 O -0.567 6.567 10 N -0.593 5.593 11 C 0.232 3.768 12 C -0.547 4.547 13 H 0.065 0.935 14 C 0.068 3.932 15 N -0.882 5.882 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.129 3.871 21 C -0.046 4.046 22 C 0.222 3.778 23 N -0.452 5.452 24 C 0.119 3.881 25 C -0.066 4.066 26 N -0.319 5.319 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.209 0.791 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.268 0.732 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -1.290 -7.856 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.309 6.309 3 C -0.024 4.024 4 C 0.017 3.983 5 N -0.147 5.147 6 C -0.015 4.015 7 C -0.302 4.302 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.323 5.323 11 C 0.112 3.888 12 C -0.585 4.585 13 H 0.083 0.917 14 C -0.136 4.136 15 N -0.519 5.519 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.004 3.996 21 C -0.087 4.087 22 C -0.096 4.096 23 N -0.130 5.130 24 C -0.048 4.048 25 C -0.124 4.124 26 N -0.140 5.140 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.967 -0.761 -8.080 10.073 hybrid contribution 0.378 -0.871 1.030 1.401 sum -5.589 -1.632 -7.050 9.143 Atomic orbital electron populations 1.22740 0.80406 1.02740 1.00258 1.87769 1.20222 1.27344 1.95597 1.22663 0.92802 0.84960 1.02003 1.21366 0.92439 0.79251 1.05201 1.48079 1.33746 1.11645 1.21275 1.24236 0.89135 0.95072 0.93056 1.20014 1.11137 0.96330 1.02755 1.17299 0.81795 0.80621 0.81546 1.90681 1.39571 1.47815 1.66703 1.48041 1.41293 1.37438 1.05557 1.19591 0.89064 0.88724 0.91413 1.21536 0.98568 1.03764 1.34646 0.91710 1.24961 0.94846 0.98491 0.95319 1.69919 1.09740 1.35190 1.37037 0.86678 0.79881 0.82535 0.79249 1.19903 1.21038 1.19907 1.21069 0.93678 0.85655 0.99222 1.19800 0.96656 0.91618 1.00673 1.29142 0.93686 0.93707 0.93040 1.81185 1.10261 1.11061 1.10454 1.22267 0.93699 0.95214 0.93645 1.20122 1.02270 0.90577 0.99468 1.76940 1.26029 0.96794 1.14279 0.89494 0.93747 0.94018 0.91879 0.92139 0.87263 0.89169 0.77433 0.94597 0.93540 0.92250 0.89219 0.90137 0.87266 0.87130 0.90373 0.91395 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.04 10.70 -35.23 -0.38 -5.41 16 3 C 0.05 0.70 6.12 37.16 0.23 0.93 16 4 C 0.14 1.92 6.86 -4.04 -0.03 1.89 16 5 N -0.37 -6.13 3.65 -60.80 -0.22 -6.35 16 6 C 0.13 2.45 9.15 -16.56 -0.15 2.30 16 7 C -0.29 -5.39 5.14 -105.07 -0.54 -5.93 16 8 C 0.60 11.49 7.25 -12.52 -0.09 11.40 16 9 O -0.57 -11.66 16.51 5.27 0.09 -11.57 16 10 N -0.59 -10.82 2.46 -176.33 -0.43 -11.26 16 11 C 0.23 4.75 4.68 -5.19 -0.02 4.73 16 12 C -0.55 -12.22 7.12 -34.44 -0.25 -12.47 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.58 5.46 -17.81 -0.10 1.48 16 15 N -0.88 -21.46 13.29 55.43 0.74 -20.72 16 16 Si 0.89 18.44 29.54 -169.99 -5.02 13.42 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 C 0.13 2.01 5.37 -4.04 -0.02 1.99 16 21 C -0.05 -0.58 6.00 -29.52 -0.18 -0.76 16 22 C 0.22 3.16 15.43 -20.75 -0.32 2.84 16 23 N -0.45 -7.49 18.54 42.16 0.78 -6.71 16 24 C 0.12 2.05 7.26 -82.02 -0.60 1.46 16 25 C -0.07 -0.90 10.08 36.00 0.36 -0.54 16 26 N -0.32 -5.49 12.34 33.90 0.42 -5.07 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 1.46 8.06 -51.93 -0.42 1.04 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.21 4.05 5.46 -52.48 -0.29 3.76 16 35 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.05 1.01 5.54 -51.93 -0.29 0.72 16 37 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 38 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 39 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 40 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.11 1.27 8.14 -51.92 -0.42 0.84 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.05 8.01 -51.93 -0.42 0.64 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -28.12 383.52 -5.25 -33.37 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.41 Total: 3.75 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.59 Total: 10.78 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 1.28 Total: -50.11 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.12 -5.25 -33.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360320228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.912 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds