Wall clock time and date at job start Tue Mar 31 2020 13:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.53005 * 109.46889 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75322 * 125.00179 * 5 4 3 7 7 C 1.38045 * 107.41791 * 180.02562 * 6 5 4 8 8 C 1.47420 * 126.41887 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00247 * 135.16513 * 8 7 6 10 10 N 1.34775 * 120.00075 * 315.17006 * 8 7 6 11 11 C 1.46502 * 120.00060 * 4.00647 * 10 8 7 12 12 C 1.50697 * 109.46853 * 93.79437 * 11 10 8 13 13 H 1.07999 * 120.00313 * 359.97438 * 12 11 10 14 14 C 1.37886 * 120.00125 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99411 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47074 * 59.99857 * 16 14 12 18 18 H 1.48504 * 109.47014 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46999 * 300.00011 * 16 14 12 20 20 C 1.46499 * 120.00306 * 184.01127 * 10 8 7 21 21 C 1.52996 * 109.47500 * 85.24039 * 20 10 8 22 22 C 1.47200 * 109.47551 * 180.02562 * 21 20 10 23 23 N 9.01699 * 139.02721 * 230.03476 * 5 1 2 24 24 C 1.41294 * 107.17006 * 359.97438 * 7 6 5 25 25 C 1.50698 * 125.99079 * 180.02562 * 24 7 6 26 26 N 1.30453 * 108.02191 * 359.71832 * 24 7 6 27 27 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47098 * 300.00330 * 1 2 3 29 29 H 1.09004 * 109.47082 * 60.00147 * 1 2 3 30 30 H 1.09003 * 109.46947 * 299.99314 * 3 2 1 31 31 H 1.08997 * 109.47471 * 60.00106 * 3 2 1 32 32 H 1.09003 * 109.46663 * 299.99362 * 4 3 2 33 33 H 1.08999 * 109.47430 * 59.99345 * 4 3 2 34 34 H 1.08003 * 126.29187 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.47352 * 213.79226 * 11 10 8 36 36 H 1.09001 * 109.46728 * 333.79922 * 11 10 8 37 37 H 0.97001 * 119.99149 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47583 * 205.24607 * 20 10 8 39 39 H 1.09000 * 109.46676 * 325.24407 * 20 10 8 40 40 H 1.08999 * 109.47527 * 300.00818 * 21 20 10 41 41 H 1.09011 * 109.47002 * 60.00005 * 21 20 10 42 42 H 1.09000 * 109.46905 * 90.00031 * 25 24 7 43 43 H 1.09002 * 109.46868 * 209.99466 * 25 24 7 44 44 H 1.09001 * 109.47014 * 329.99474 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0218 2.9857 0.8907 7 6 5.3266 4.2842 0.5349 8 6 6.2618 5.1860 1.2315 9 8 7.0586 5.8467 0.5933 10 7 6.2338 5.2781 2.5758 11 6 5.3355 4.4184 3.3505 12 6 6.0759 3.1796 3.7842 13 1 7.1119 3.0459 3.5100 14 6 5.4305 2.2164 4.5304 15 7 4.1687 2.3791 4.8640 16 14 6.3484 0.6812 5.0687 17 1 7.5096 1.0681 5.9097 18 1 5.4378 -0.1903 5.8538 19 1 6.8279 -0.0543 3.8710 20 6 7.1017 6.2381 3.2625 21 6 6.4160 7.6051 3.3063 22 6 7.2883 8.5698 3.9958 23 7 7.9622 9.3146 4.5268 24 6 4.5743 4.5871 -0.6221 25 6 4.5856 5.8965 -1.3681 26 7 3.8733 3.5325 -0.9353 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 3.8574 0.6436 0.8892 33 1 3.8568 0.6438 -0.8908 34 1 5.4248 2.4422 1.7325 35 1 4.9844 4.9584 4.2298 36 1 4.4827 4.1347 2.7337 37 1 3.7146 1.7013 5.3886 38 1 7.2913 5.8940 4.2793 39 1 8.0464 6.3226 2.7254 40 1 6.2264 7.9493 2.2896 41 1 5.4711 7.5206 3.8434 42 1 5.3572 5.8696 -2.1376 43 1 3.6134 6.0575 -1.8340 44 1 4.7943 6.7092 -0.6724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360320228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:30 Heat of formation + Delta-G solvation = 2.805256 kcal Electronic energy + Delta-G solvation = -27243.892600 eV Core-core repulsion = 23390.816792 eV Total energy + Delta-G solvation = -3853.075808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35563 -40.26878 -38.95004 -37.84023 -36.70270 -35.20346 -34.70342 -32.88246 -31.76608 -30.58199 -29.03931 -28.61555 -27.00010 -25.50647 -24.90580 -23.88976 -22.59381 -20.96848 -19.75973 -18.72807 -18.33785 -18.13730 -17.74194 -17.22940 -16.98561 -16.56670 -16.32714 -16.09669 -15.76961 -15.66557 -15.43899 -14.93221 -14.64122 -14.51593 -14.28963 -14.08369 -13.74525 -13.65517 -13.59270 -13.41153 -13.26789 -12.92070 -12.84738 -12.75875 -12.69805 -12.59738 -12.44945 -12.28815 -12.10076 -11.76783 -11.68152 -11.63947 -10.76717 -10.73360 -10.52718 -10.17127 -9.52207 -9.34474 -8.14566 -6.27549 0.77534 1.31415 1.35205 1.45719 1.51336 1.55027 1.69115 1.81639 2.28691 2.36981 2.55149 2.78044 3.15111 3.22533 3.55507 3.88311 3.89584 4.05113 4.05804 4.19683 4.22680 4.32384 4.42990 4.49332 4.51041 4.60226 4.64541 4.65461 4.82396 4.84579 4.88264 4.92941 5.01406 5.07407 5.09092 5.11608 5.37759 5.67879 5.74970 5.91885 5.96082 6.08508 6.14795 6.58036 6.62715 6.71716 6.90862 7.38853 7.51036 8.88898 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.004800 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.269640 B = 5831.645087 C = 7924.411650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.065 3.935 4 C 0.133 3.867 5 N -0.364 5.364 6 C 0.127 3.873 7 C -0.307 4.307 8 C 0.599 3.401 9 O -0.582 6.582 10 N -0.591 5.591 11 C 0.248 3.752 12 C -0.544 4.544 13 H 0.057 0.943 14 C 0.037 3.963 15 N -0.907 5.907 16 Si 0.935 3.065 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.126 3.874 21 C -0.031 4.031 22 C 0.246 3.754 23 N -0.491 5.491 24 C 0.114 3.886 25 C -0.063 4.063 26 N -0.322 5.322 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.196 0.804 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -1.508 -8.664 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.013 4.013 4 C 0.012 3.988 5 N -0.144 5.144 6 C -0.023 4.023 7 C -0.322 4.322 8 C 0.389 3.611 9 O -0.464 6.464 10 N -0.320 5.320 11 C 0.127 3.873 12 C -0.582 4.582 13 H 0.075 0.925 14 C -0.165 4.165 15 N -0.545 5.545 16 Si 0.762 3.238 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.193 1.193 20 C 0.001 3.999 21 C -0.072 4.072 22 C -0.071 4.071 23 N -0.169 5.169 24 C -0.054 4.054 25 C -0.122 4.122 26 N -0.144 5.144 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.213 0.787 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.556 -0.983 -8.891 11.091 hybrid contribution 0.532 -0.857 1.253 1.609 sum -6.024 -1.840 -7.638 9.900 Atomic orbital electron populations 1.22976 0.78699 1.04299 1.00887 1.87746 1.22098 1.26891 1.95660 1.22462 0.92280 0.85217 1.01334 1.21588 0.92945 0.78123 1.06120 1.48276 1.33143 1.12335 1.20598 1.23984 0.89909 0.95195 0.93227 1.20157 1.11796 0.96516 1.03703 1.17377 0.81645 0.80480 0.81639 1.90665 1.40241 1.48593 1.66924 1.47963 1.41164 1.37567 1.05339 1.19259 0.88833 0.88308 0.90901 1.21644 0.98139 1.04405 1.34054 0.92522 1.25419 0.95239 1.00337 0.95507 1.69991 1.10699 1.35885 1.37917 0.85952 0.78662 0.80325 0.78867 1.20383 1.21282 1.19250 1.21161 0.93400 0.86546 0.98774 1.19716 0.96564 0.89442 1.01496 1.29229 0.92821 0.93029 0.91998 1.81215 1.11422 1.12382 1.11878 1.22770 0.92976 0.96306 0.93307 1.20223 1.03762 0.88796 0.99394 1.76920 1.26111 0.96940 1.14412 0.87543 0.93725 0.92783 0.91646 0.93622 0.87160 0.87430 0.78737 0.95342 0.94648 0.92413 0.89278 0.90584 0.86072 0.85256 0.89624 0.89299 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -9.94 10.70 -148.98 -1.59 -11.54 16 3 C 0.06 1.66 6.12 71.98 0.44 2.10 16 4 C 0.13 3.56 6.86 86.38 0.59 4.16 16 5 N -0.36 -11.93 3.65 -346.28 -1.26 -13.19 16 6 C 0.13 4.65 9.15 84.28 0.77 5.42 16 7 C -0.31 -11.34 5.14 -20.15 -0.10 -11.44 16 8 C 0.60 22.62 7.25 86.66 0.63 23.24 16 9 O -0.58 -23.41 16.51 -4.05 -0.07 -23.47 16 10 N -0.59 -21.18 2.46 -830.05 -2.05 -23.22 16 11 C 0.25 10.10 4.68 85.63 0.40 10.50 16 12 C -0.54 -24.24 7.12 25.60 0.18 -24.05 16 13 H 0.06 2.59 7.81 -2.91 -0.02 2.57 16 14 C 0.04 1.70 5.46 84.66 0.46 2.16 16 15 N -0.91 -44.06 13.29 21.45 0.28 -43.78 16 16 Si 0.94 37.48 29.54 68.60 2.03 39.51 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 C 0.13 3.79 5.37 86.38 0.46 4.25 16 21 C -0.03 -0.73 6.00 28.79 0.17 -0.56 16 22 C 0.25 6.66 15.43 89.44 1.38 8.05 16 23 N -0.49 -15.83 18.54 20.01 0.37 -15.46 16 24 C 0.11 3.79 7.26 43.51 0.32 4.11 16 25 C -0.06 -1.62 10.08 71.24 0.72 -0.90 16 26 N -0.32 -10.71 12.34 -46.67 -0.58 -11.29 16 27 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 2.91 8.06 -2.39 -0.02 2.89 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.20 7.68 5.46 -2.91 -0.02 7.67 16 35 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.04 1.55 5.54 -2.39 -0.01 1.54 16 37 H 0.27 12.58 8.31 -92.71 -0.77 11.81 16 38 H 0.09 2.69 8.04 -2.38 -0.02 2.67 16 39 H 0.08 2.38 7.51 -2.39 -0.02 2.36 16 40 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.00 8.01 -2.39 -0.02 1.98 16 Total: -1.00 -58.38 383.52 5.82 -52.57 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.01 Total: 21.12 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 7.67 Total: 28.75 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.23 Total: -106.94 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.66 Total: -35.01 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -58.38 5.82 -52.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360320228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.373 kcal (2) G-P(sol) polarization free energy of solvation -58.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds