Wall clock time and date at job start Tue Mar 31 2020 12:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00279 * 2 1 4 4 O 1.20829 * 119.99653 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00249 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46791 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46830 * 180.02562 * 6 5 3 8 8 C 1.46494 * 120.00464 * 89.99678 * 7 6 5 9 9 C 1.50705 * 109.46744 * 84.09884 * 8 7 6 10 10 C 1.38647 * 120.79364 * 275.86628 * 9 8 7 11 11 C 1.38203 * 119.16689 * 179.80263 * 10 9 8 12 12 N 1.31875 * 120.76009 * 0.48835 * 11 10 9 13 13 C 1.31870 * 121.72435 * 359.74483 * 12 11 10 14 14 C 1.38204 * 120.76798 * 0.02562 * 13 12 11 15 15 C 1.34779 * 119.99783 * 270.00023 * 7 6 5 16 16 O 1.21288 * 119.99920 * 5.03951 * 15 7 6 17 17 C 1.50695 * 120.00024 * 185.04606 * 15 7 6 18 18 C 1.53000 * 109.47252 * 175.61024 * 17 15 7 19 19 C 1.50695 * 109.47252 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00364 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99996 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00262 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00093 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47344 * 89.99920 * 23 21 19 25 25 H 1.48500 * 109.47432 * 210.00176 * 23 21 19 26 26 H 1.48503 * 109.47137 * 329.99974 * 23 21 19 27 27 H 1.08999 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46842 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.47281 * 60.00098 * 1 2 3 30 30 H 1.08995 * 109.47266 * 59.99961 * 5 3 2 31 31 H 1.09001 * 109.46930 * 299.99711 * 5 3 2 32 32 H 1.08995 * 109.47274 * 59.99933 * 6 5 3 33 33 H 1.09001 * 109.47121 * 299.99561 * 6 5 3 34 34 H 1.08991 * 109.47754 * 204.10106 * 8 7 6 35 35 H 1.08999 * 109.47134 * 324.10664 * 8 7 6 36 36 H 1.08007 * 120.41508 * 0.02562 * 10 9 8 37 37 H 1.07994 * 119.62151 * 180.21124 * 11 10 9 38 38 H 1.08000 * 119.61289 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.42019 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.47022 * 295.60566 * 17 15 7 41 41 H 1.09000 * 109.47517 * 55.60407 * 17 15 7 42 42 H 1.09008 * 109.46913 * 299.99515 * 18 17 15 43 43 H 1.09000 * 109.47363 * 59.99289 * 18 17 15 44 44 H 0.96996 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 -0.0010 8 6 6.1936 2.8580 -1.2702 9 6 6.2437 4.2763 -1.7772 10 6 5.1911 4.8067 -2.5072 11 6 5.2707 6.1127 -2.9523 12 7 6.3353 6.8482 -2.6981 13 6 7.3568 6.3754 -2.0111 14 6 7.3463 5.0799 -1.5300 15 6 6.1371 2.8531 1.1657 16 8 5.5406 2.7286 2.2144 17 6 7.6316 3.0464 1.1672 18 6 8.1301 3.1570 2.6094 19 6 9.6247 3.3496 2.6109 20 1 10.1651 3.3888 1.6767 21 6 10.3023 3.4759 3.8050 22 7 9.6443 3.4287 4.9428 23 14 12.1551 3.7140 3.8069 24 1 12.4678 5.1650 3.7618 25 1 12.7290 3.1221 5.0420 26 1 12.7415 3.0441 2.6184 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2356 0.8906 33 1 3.6100 3.2367 -0.8894 34 1 7.2083 2.4909 -1.1170 35 1 5.6860 2.2286 -2.0012 36 1 4.3183 4.2080 -2.7223 37 1 4.4535 6.5344 -3.5186 38 1 8.2116 7.0080 -1.8223 39 1 8.1861 4.6983 -0.9683 40 1 8.1085 2.1946 0.6823 41 1 7.8805 3.9590 0.6256 42 1 7.6532 4.0088 3.0944 43 1 7.8812 2.2444 3.1510 44 1 10.1210 3.5179 5.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360333476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:47 Heat of formation + Delta-G solvation = -92.890107 kcal Electronic energy + Delta-G solvation = -26681.134796 eV Core-core repulsion = 22791.616575 eV Total energy + Delta-G solvation = -3889.518221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79154 -40.38197 -39.35083 -36.84672 -35.98653 -33.81621 -33.14159 -31.69857 -31.24301 -30.70389 -28.15675 -26.89118 -26.10201 -24.12334 -23.48601 -22.36188 -21.51627 -20.74566 -18.77557 -17.89069 -17.33178 -16.99595 -16.76378 -16.67033 -16.33335 -15.73870 -15.72219 -15.53720 -14.96768 -14.45126 -14.33347 -13.89439 -13.83991 -13.68425 -13.35251 -13.07963 -12.92909 -12.71613 -12.47703 -12.24224 -12.20498 -12.03866 -11.59587 -11.31043 -11.14065 -11.04684 -10.95849 -10.74232 -10.62386 -10.02514 -9.83408 -9.72044 -9.59559 -9.25547 -9.20036 -9.07974 -8.72193 -8.35766 -5.99797 -4.04757 1.06602 1.09644 1.99196 2.39354 3.03266 3.20936 3.30751 3.37470 3.39129 3.80429 4.38931 4.43277 4.45198 4.51329 4.58366 4.72219 4.82965 4.84301 4.91336 4.95281 5.04186 5.12809 5.17865 5.23750 5.31553 5.35321 5.37964 5.55010 5.65480 5.69901 5.84979 5.90469 6.08984 6.11734 6.14543 6.21015 6.52891 6.62900 6.79172 7.50827 7.52084 7.69152 7.79800 7.90252 8.01954 8.32055 8.57630 9.03223 9.59215 11.11048 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.003749 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.698897 B = 7467.520722 C =10014.163499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.508 6.508 5 C -0.132 4.132 6 C 0.128 3.872 7 N -0.620 5.620 8 C 0.148 3.852 9 C -0.062 4.062 10 C -0.162 4.162 11 C 0.094 3.906 12 N -0.487 5.487 13 C 0.100 3.900 14 C -0.155 4.155 15 C 0.513 3.487 16 O -0.522 6.522 17 C -0.133 4.133 18 C 0.037 3.963 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.888 5.888 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -4.294 -18.049 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.396 6.396 5 C -0.170 4.170 6 C 0.005 3.995 7 N -0.355 5.355 8 C 0.025 3.975 9 C -0.072 4.072 10 C -0.182 4.182 11 C -0.063 4.063 12 N -0.196 5.196 13 C -0.056 4.056 14 C -0.175 4.175 15 C 0.304 3.696 16 O -0.396 6.396 17 C -0.173 4.173 18 C 0.000 4.000 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.639 -3.217 -17.542 22.453 hybrid contribution 0.686 -0.673 0.345 1.021 sum -12.953 -3.890 -17.198 21.879 Atomic orbital electron populations 1.23265 0.76332 1.03665 1.02592 1.86520 1.23480 1.33589 1.84127 1.23699 0.91975 0.81295 0.71980 1.90683 1.67315 1.36262 1.45295 1.21833 0.87330 1.01302 1.06583 1.21107 0.80563 0.93230 1.04607 1.48177 1.05690 1.75636 1.06022 1.20510 0.99416 0.91788 0.85817 1.20729 0.93900 0.97310 0.95241 1.22018 0.99129 0.97331 0.99746 1.22714 0.95758 0.90830 0.97005 1.67678 1.01016 1.37739 1.13162 1.22832 0.96417 0.93528 0.92862 1.22349 0.99531 0.95426 1.00214 1.21711 0.91495 0.74294 0.82141 1.90691 1.70523 1.47513 1.30884 1.22049 0.88152 1.02166 1.04909 1.18911 0.95107 0.98552 0.87474 1.21170 0.92394 1.50604 0.92405 0.92605 1.25019 0.98302 0.95310 0.95669 1.69993 1.35648 1.49667 0.97370 0.86608 0.85629 0.78296 0.77516 1.20653 1.21230 1.19855 0.88120 0.91790 0.91933 0.87555 0.86727 0.88951 0.90049 0.87958 0.89353 0.85110 0.83009 0.82493 0.83688 0.89983 0.90062 0.95964 0.95688 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.78 10.56 -39.26 -0.41 -4.19 16 3 C 0.47 5.44 7.96 36.01 0.29 5.73 16 4 O -0.51 -7.14 15.73 -18.75 -0.29 -7.44 16 5 C -0.13 -1.37 6.14 -27.88 -0.17 -1.55 16 6 C 0.13 1.57 4.68 -4.04 -0.02 1.55 16 7 N -0.62 -8.14 2.46 -175.06 -0.43 -8.57 16 8 C 0.15 1.44 5.41 -5.19 -0.03 1.41 16 9 C -0.06 -0.67 5.49 -104.31 -0.57 -1.24 16 10 C -0.16 -1.59 9.40 -39.44 -0.37 -1.97 16 11 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 12 N -0.49 -6.23 10.36 -13.25 -0.14 -6.37 16 13 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 14 C -0.16 -1.82 9.07 -39.44 -0.36 -2.17 16 15 C 0.51 9.29 7.65 -10.99 -0.08 9.20 16 16 O -0.52 -11.73 15.62 5.55 0.09 -11.64 16 17 C -0.13 -2.52 4.13 -27.89 -0.12 -2.63 16 18 C 0.04 0.96 4.27 -27.89 -0.12 0.84 16 19 C -0.53 -14.36 9.11 -34.44 -0.31 -14.68 16 20 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 23 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.42 7.46 -51.93 -0.39 1.03 16 33 H 0.08 0.85 6.90 -51.93 -0.36 0.49 16 34 H 0.10 0.95 6.29 -51.93 -0.33 0.62 16 35 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.13 0.99 7.40 -52.48 -0.39 0.60 16 37 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.15 1.66 6.19 -52.49 -0.32 1.33 16 40 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 41 H 0.08 1.40 5.25 -51.93 -0.27 1.12 16 42 H 0.02 0.64 8.14 -51.92 -0.42 0.21 16 43 H 0.02 0.71 8.05 -51.93 -0.42 0.29 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -36.01 374.69 -7.32 -43.34 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.21 Total: 0.02 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.29 Total: -0.77 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.17 Total: -41.09 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.62 Total: -23.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.01 -7.32 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360333476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.553 kcal (2) G-P(sol) polarization free energy of solvation -36.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds