Wall clock time and date at job start Tue Mar 31 2020 12:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00279 * 2 1 4 4 O 1.20829 * 119.99653 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00249 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46791 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46830 * 180.02562 * 6 5 3 8 8 C 1.46494 * 120.00464 * 89.99678 * 7 6 5 9 9 C 1.50705 * 109.46744 * 84.09884 * 8 7 6 10 10 C 1.38647 * 120.79364 * 275.86628 * 9 8 7 11 11 C 1.38203 * 119.16689 * 179.80263 * 10 9 8 12 12 N 1.31875 * 120.76009 * 0.48835 * 11 10 9 13 13 C 1.31870 * 121.72435 * 359.74483 * 12 11 10 14 14 C 1.38204 * 120.76798 * 0.02562 * 13 12 11 15 15 C 1.34779 * 119.99783 * 270.00023 * 7 6 5 16 16 O 1.21288 * 119.99920 * 5.03951 * 15 7 6 17 17 C 1.50695 * 120.00024 * 185.04606 * 15 7 6 18 18 C 1.53000 * 109.47252 * 175.61024 * 17 15 7 19 19 C 1.50695 * 109.47252 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00364 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99996 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00262 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00093 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47344 * 89.99920 * 23 21 19 25 25 H 1.48500 * 109.47432 * 210.00176 * 23 21 19 26 26 H 1.48503 * 109.47137 * 329.99974 * 23 21 19 27 27 H 1.08999 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46842 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.47281 * 60.00098 * 1 2 3 30 30 H 1.08995 * 109.47266 * 59.99961 * 5 3 2 31 31 H 1.09001 * 109.46930 * 299.99711 * 5 3 2 32 32 H 1.08995 * 109.47274 * 59.99933 * 6 5 3 33 33 H 1.09001 * 109.47121 * 299.99561 * 6 5 3 34 34 H 1.08991 * 109.47754 * 204.10106 * 8 7 6 35 35 H 1.08999 * 109.47134 * 324.10664 * 8 7 6 36 36 H 1.08007 * 120.41508 * 0.02562 * 10 9 8 37 37 H 1.07994 * 119.62151 * 180.21124 * 11 10 9 38 38 H 1.08000 * 119.61289 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.42019 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.47022 * 295.60566 * 17 15 7 41 41 H 1.09000 * 109.47517 * 55.60407 * 17 15 7 42 42 H 1.09008 * 109.46913 * 299.99515 * 18 17 15 43 43 H 1.09000 * 109.47363 * 59.99289 * 18 17 15 44 44 H 0.96996 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 -0.0010 8 6 6.1936 2.8580 -1.2702 9 6 6.2437 4.2763 -1.7772 10 6 5.1911 4.8067 -2.5072 11 6 5.2707 6.1127 -2.9523 12 7 6.3353 6.8482 -2.6981 13 6 7.3568 6.3754 -2.0111 14 6 7.3463 5.0799 -1.5300 15 6 6.1371 2.8531 1.1657 16 8 5.5406 2.7286 2.2144 17 6 7.6316 3.0464 1.1672 18 6 8.1301 3.1570 2.6094 19 6 9.6247 3.3496 2.6109 20 1 10.1651 3.3888 1.6767 21 6 10.3023 3.4759 3.8050 22 7 9.6443 3.4287 4.9428 23 14 12.1551 3.7140 3.8069 24 1 12.4678 5.1650 3.7618 25 1 12.7290 3.1221 5.0420 26 1 12.7415 3.0441 2.6184 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2356 0.8906 33 1 3.6100 3.2367 -0.8894 34 1 7.2083 2.4909 -1.1170 35 1 5.6860 2.2286 -2.0012 36 1 4.3183 4.2080 -2.7223 37 1 4.4535 6.5344 -3.5186 38 1 8.2116 7.0080 -1.8223 39 1 8.1861 4.6983 -0.9683 40 1 8.1085 2.1946 0.6823 41 1 7.8805 3.9590 0.6256 42 1 7.6532 4.0088 3.0944 43 1 7.8812 2.2444 3.1510 44 1 10.1210 3.5179 5.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360333476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:46 Heat of formation + Delta-G solvation = -116.074186 kcal Electronic energy + Delta-G solvation = -26682.140133 eV Core-core repulsion = 22791.616575 eV Total energy + Delta-G solvation = -3890.523559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74747 -41.29459 -40.53412 -37.77478 -37.14490 -35.63771 -34.29442 -33.10998 -32.15129 -32.05493 -28.95058 -28.02153 -27.55446 -25.45642 -24.32264 -23.40206 -22.99266 -21.77947 -20.02093 -18.93356 -18.75231 -17.95417 -17.83111 -17.56253 -17.49214 -17.03028 -16.70386 -16.52749 -16.36604 -16.26559 -15.20219 -15.01685 -14.77751 -14.54503 -14.46476 -14.28839 -14.06064 -13.85533 -13.77164 -13.49302 -13.28102 -13.17849 -12.88372 -12.79127 -12.48136 -12.35869 -12.17981 -11.86966 -11.81867 -11.67509 -11.54791 -11.28926 -10.82796 -10.59344 -10.53927 -10.50407 -10.02467 -9.82481 -8.15789 -6.29350 0.23399 0.25905 1.10049 1.44150 1.46205 1.51911 1.56889 1.66336 2.17178 2.44817 2.94370 3.17941 3.58486 3.62741 3.67826 3.76111 3.81197 3.99888 4.02476 4.20506 4.22213 4.29118 4.31937 4.37449 4.38357 4.46705 4.51208 4.68054 4.70880 4.72177 4.77316 4.88009 4.96038 5.05705 5.10916 5.28797 5.34050 5.50481 5.55934 5.64511 5.82984 5.87306 6.18916 6.27407 6.64657 6.89286 7.07055 7.20002 7.41123 8.96843 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.003749 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.698897 B = 7467.520722 C =10014.163499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.124 4.124 6 C 0.130 3.870 7 N -0.603 5.603 8 C 0.142 3.858 9 C -0.069 4.069 10 C -0.155 4.155 11 C 0.083 3.917 12 N -0.513 5.513 13 C 0.083 3.917 14 C -0.168 4.168 15 C 0.513 3.487 16 O -0.580 6.580 17 C -0.121 4.121 18 C 0.043 3.957 19 C -0.537 4.537 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.289 1.289 26 H -0.252 1.252 27 H 0.131 0.869 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.145 0.855 40 H 0.112 0.888 41 H 0.102 0.898 42 H -0.024 1.024 43 H -0.016 1.016 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.744 -5.408 -21.367 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.162 4.162 6 C 0.007 3.993 7 N -0.335 5.335 8 C 0.021 3.979 9 C -0.078 4.078 10 C -0.175 4.175 11 C -0.074 4.074 12 N -0.223 5.223 13 C -0.073 4.073 14 C -0.188 4.188 15 C 0.304 3.696 16 O -0.458 6.458 17 C -0.160 4.160 18 C 0.005 3.995 19 C -0.575 4.575 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.215 1.215 26 H -0.175 1.175 27 H 0.149 0.851 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.179 0.821 37 H 0.193 0.807 38 H 0.182 0.818 39 H 0.163 0.837 40 H 0.130 0.870 41 H 0.120 0.880 42 H -0.006 1.006 43 H 0.002 0.998 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.240 -4.346 -20.943 25.155 hybrid contribution 0.434 -0.324 1.322 1.429 sum -12.806 -4.670 -19.620 23.891 Atomic orbital electron populations 1.23553 0.74737 1.05711 1.02543 1.86508 1.25087 1.32803 1.83653 1.23847 0.92322 0.81207 0.71129 1.90674 1.68020 1.37224 1.46849 1.21754 0.86764 0.99949 1.07747 1.21132 0.79535 0.94627 1.04028 1.47991 1.06194 1.73500 1.05818 1.20910 1.00265 0.92088 0.84679 1.20870 0.93905 0.97599 0.95453 1.22325 0.99574 0.97158 0.98475 1.23209 0.95777 0.91387 0.96985 1.67681 1.01880 1.38803 1.13949 1.23040 0.96874 0.94095 0.93322 1.22444 1.00196 0.95591 1.00558 1.21492 0.91220 0.74069 0.82840 1.90678 1.71324 1.50477 1.33354 1.21810 0.89259 1.04507 1.00446 1.18685 0.94968 0.94547 0.91258 1.21691 0.93089 1.49382 0.93319 0.90224 1.26110 1.04084 0.94968 0.95248 1.70180 1.38070 1.51368 0.98257 0.85378 0.78708 0.78489 0.78031 1.19967 1.21530 1.17521 0.85088 0.92583 0.91303 0.83500 0.88294 0.92809 0.87325 0.87043 0.84845 0.82141 0.80712 0.81764 0.83726 0.86994 0.87996 1.00578 0.99752 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.99 10.56 -51.41 -0.54 -7.53 16 3 C 0.47 10.28 7.96 71.24 0.57 10.85 16 4 O -0.54 -14.69 15.73 21.96 0.35 -14.34 16 5 C -0.12 -2.33 6.14 29.85 0.18 -2.15 16 6 C 0.13 2.97 4.68 86.38 0.40 3.37 16 7 N -0.60 -14.66 2.46 -826.16 -2.03 -16.69 16 8 C 0.14 2.21 5.41 85.64 0.46 2.67 16 9 C -0.07 -1.27 5.49 -19.67 -0.11 -1.38 16 10 C -0.16 -2.52 9.40 22.36 0.21 -2.31 16 11 C 0.08 1.59 11.18 84.68 0.95 2.53 16 12 N -0.51 -12.54 10.36 -195.84 -2.03 -14.57 16 13 C 0.08 1.92 11.18 84.68 0.95 2.87 16 14 C -0.17 -3.65 9.07 22.36 0.20 -3.45 16 15 C 0.51 18.68 7.65 87.66 0.67 19.35 16 16 O -0.58 -27.46 15.62 -3.05 -0.05 -27.50 16 17 C -0.12 -4.52 4.13 29.85 0.12 -4.40 16 18 C 0.04 2.32 4.27 29.85 0.13 2.45 16 19 C -0.54 -29.41 9.11 25.60 0.23 -29.17 16 20 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 21 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 22 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 23 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 27 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 30 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.69 7.46 -2.39 -0.02 1.67 16 33 H 0.11 1.91 6.90 -2.39 -0.02 1.89 16 34 H 0.11 1.61 6.29 -2.39 -0.02 1.59 16 35 H 0.13 0.99 8.11 -2.39 -0.02 0.97 16 36 H 0.16 1.61 7.40 -2.91 -0.02 1.58 16 37 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.15 3.06 6.19 -2.91 -0.02 3.04 16 40 H 0.11 3.50 7.48 -2.39 -0.02 3.49 16 41 H 0.10 3.38 5.25 -2.39 -0.01 3.37 16 42 H -0.02 -1.51 8.14 -2.38 -0.02 -1.53 16 43 H -0.02 -0.98 8.05 -2.39 -0.02 -1.00 16 44 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -84.14 374.69 5.64 -78.50 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.01 Total: 12.55 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.63 Total: 2.88 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -3.78 Total: -89.94 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.25 Total: -49.38 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -84.14 5.64 -78.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360333476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.576 kcal (2) G-P(sol) polarization free energy of solvation -84.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds