Wall clock time and date at job start Tue Mar 31 2020 12:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38062 * 119.57234 * 2 1 4 4 C 1.38840 * 119.32778 * 179.74930 * 3 2 1 5 5 C 1.38348 * 118.50358 * 0.51474 * 4 3 2 6 6 N 1.47996 * 120.45122 * 179.70998 * 5 4 3 7 7 O 1.21800 * 120.00252 * 353.40373 * 6 5 4 8 8 O 1.21796 * 120.00154 * 173.41059 * 6 5 4 9 9 C 1.39094 * 119.09879 * 359.72472 * 5 4 3 10 10 N 1.38998 * 119.70648 * 180.02562 * 9 5 4 11 11 C 1.46500 * 120.00119 * 174.52310 * 10 9 5 12 12 C 1.53005 * 109.47098 * 180.02562 * 11 10 9 13 13 C 1.53041 * 109.46079 * 295.06707 * 12 11 10 14 14 C 1.53184 * 109.31389 * 178.61722 * 13 12 11 15 15 N 1.46919 * 108.77889 * 54.63472 * 14 13 12 16 16 C 1.36943 * 120.63485 * 126.41395 * 15 14 13 17 17 H 1.07996 * 119.99508 * 324.79274 * 16 15 14 18 18 C 1.38813 * 120.00030 * 144.79393 * 16 15 14 19 19 N 1.31615 * 119.99903 * 359.71377 * 18 16 15 20 20 Si 1.86796 * 119.99596 * 179.71436 * 18 16 15 21 21 H 1.48501 * 109.47331 * 60.00040 * 20 18 16 22 22 H 1.48505 * 109.47115 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47378 * 299.99822 * 20 18 16 24 24 C 1.46934 * 118.73648 * 306.39316 * 15 14 13 25 25 C 1.53036 * 109.45833 * 175.00110 * 12 11 10 26 26 N 1.31942 * 119.57063 * 180.26522 * 2 1 3 27 27 H 1.09001 * 109.47136 * 269.73357 * 1 2 3 28 28 H 1.09005 * 109.47411 * 29.73022 * 1 2 3 29 29 H 1.09000 * 109.47660 * 149.72850 * 1 2 3 30 30 H 1.07996 * 120.34106 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.75249 * 180.23443 * 4 3 2 32 32 H 0.97001 * 120.00073 * 354.52480 * 10 9 5 33 33 H 1.08997 * 109.47076 * 299.99685 * 11 10 9 34 34 H 1.08996 * 109.47365 * 60.00039 * 11 10 9 35 35 H 1.08996 * 109.45909 * 55.02433 * 12 11 10 36 36 H 1.09006 * 109.49648 * 298.56647 * 13 12 11 37 37 H 1.09003 * 109.49803 * 58.66125 * 13 12 11 38 38 H 1.09003 * 109.58940 * 294.84505 * 14 13 12 39 39 H 1.09002 * 109.70484 * 174.49325 * 14 13 12 40 40 H 0.97002 * 119.99705 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58565 * 293.81718 * 24 15 14 42 42 H 1.09003 * 109.70251 * 173.46337 * 24 15 14 43 43 H 1.09004 * 109.50072 * 301.33360 * 25 12 11 44 44 H 1.09002 * 109.50407 * 61.43125 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5767 1.1949 0.0053 5 6 4.2318 -0.0237 -0.0005 6 7 5.7106 -0.0803 -0.0017 7 8 6.3592 0.9440 -0.1187 8 8 6.2792 -1.1511 0.1143 9 6 3.4815 -1.1950 -0.0055 10 7 4.1266 -2.4262 -0.0109 11 6 3.3480 -3.6617 0.1049 12 6 4.2927 -4.8648 0.0737 13 6 4.9757 -4.9414 -1.2937 14 6 5.9463 -6.1264 -1.3096 15 7 5.2139 -7.3428 -0.9320 16 6 5.2449 -8.4530 -1.7330 17 1 5.2761 -8.3433 -2.8069 18 6 5.2363 -9.7194 -1.1646 19 7 5.2040 -9.8530 0.1443 20 14 5.2707 -11.2339 -2.2576 21 1 6.5043 -11.2200 -3.0842 22 1 5.2543 -12.4548 -1.4124 23 1 4.0801 -11.2309 -3.1451 24 6 4.4478 -7.3455 0.3218 25 6 3.4939 -6.1468 0.3193 26 7 2.1581 -1.1476 -0.0053 27 1 -0.3633 -0.0048 1.0277 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3634 -0.8875 -0.5180 30 1 1.6469 2.1352 -0.0004 31 1 4.1329 2.1206 0.0092 32 1 5.0924 -2.4673 -0.0912 33 1 2.7971 -3.6572 1.0454 34 1 2.6465 -3.7284 -0.7267 35 1 5.0485 -4.7532 0.8511 36 1 4.2222 -5.0779 -2.0696 37 1 5.5253 -4.0184 -1.4781 38 1 6.7516 -5.9487 -0.5969 39 1 6.3632 -6.2466 -2.3095 40 1 5.1976 -10.7380 0.5415 41 1 5.1309 -7.2672 1.1676 42 1 3.8739 -8.2689 0.3999 43 1 2.9889 -6.0818 1.2832 44 1 2.7544 -6.2720 -0.4716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360876327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:35 Heat of formation + Delta-G solvation = 51.945749 kcal Electronic energy + Delta-G solvation = -27018.021601 eV Core-core repulsion = 23167.076685 eV Total energy + Delta-G solvation = -3850.944916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41821 -40.69485 -38.26397 -36.89920 -35.90829 -33.91027 -33.36628 -31.68721 -30.56076 -29.66902 -29.13888 -26.88998 -25.25202 -24.25103 -23.11661 -22.71057 -22.00382 -20.90719 -19.49546 -19.12972 -18.89825 -17.77165 -17.57552 -16.93549 -16.65869 -15.45804 -15.29013 -14.91712 -14.70701 -14.33584 -13.98596 -13.79348 -13.47011 -13.31887 -13.24939 -13.05168 -12.70054 -12.44616 -12.28427 -12.00346 -11.64759 -11.38248 -11.33129 -11.29601 -10.91393 -10.78682 -10.75767 -10.54137 -10.38924 -10.22604 -10.18029 -10.11012 -9.90648 -9.50934 -9.47148 -8.45034 -8.31146 -6.52981 -5.77063 -3.29603 -0.32542 0.80311 1.11842 1.28278 2.75419 3.10767 3.38561 3.43556 3.44593 3.73519 3.98581 4.20878 4.40956 4.49250 4.70859 4.98782 5.06163 5.08893 5.18809 5.22207 5.33914 5.41189 5.43982 5.45378 5.61357 5.75254 5.84322 5.88331 6.03100 6.13755 6.23290 6.35682 6.49883 6.59958 6.63951 6.75654 6.79541 6.86498 6.92548 7.03371 7.43610 7.50317 7.70714 7.77201 7.80365 8.53711 9.26430 9.85669 10.46018 11.30030 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002808 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.152045 B = 9968.907137 C =10875.023270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.236 3.764 3 C -0.246 4.246 4 C 0.038 3.962 5 C -0.188 4.188 6 N 0.057 4.943 7 O -0.163 6.163 8 O -0.195 6.195 9 C 0.472 3.528 10 N -0.679 5.679 11 C 0.123 3.877 12 C -0.092 4.092 13 C -0.128 4.128 14 C 0.146 3.854 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.906 5.906 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.171 3.829 25 C -0.132 4.132 26 N -0.531 5.531 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.427 0.573 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.019 0.981 39 H 0.053 0.947 40 H 0.255 0.745 41 H 0.016 0.984 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 23.270 1.520 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 C -0.270 4.270 4 C 0.012 3.988 5 C -0.282 4.282 6 N 0.565 4.435 7 O -0.379 6.379 8 O -0.395 6.395 9 C 0.228 3.772 10 N -0.318 5.318 11 C 0.000 4.000 12 C -0.111 4.111 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.316 5.316 16 C -0.384 4.384 17 H 0.079 0.921 18 C -0.191 4.191 19 N -0.550 5.550 20 Si 0.734 3.266 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.045 3.955 25 C -0.171 4.171 26 N -0.252 5.252 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.278 0.722 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.684 21.986 1.632 24.499 hybrid contribution 1.263 0.010 -0.517 1.365 sum -9.421 21.997 1.115 23.955 Atomic orbital electron populations 1.20917 0.87404 1.04579 1.04165 1.21539 0.97521 0.87335 0.84340 1.21667 0.92762 0.99994 1.12568 1.21239 0.94776 0.96260 0.86544 1.21405 0.79597 0.96702 1.30508 1.43274 1.03024 1.00246 0.96909 1.94508 1.65781 1.24306 1.53275 1.94251 1.71568 1.17639 1.56022 1.18123 0.88228 0.85138 0.85734 1.46329 1.12285 1.02334 1.70806 1.21797 0.94436 0.81773 1.02025 1.21346 0.97377 0.93531 0.98843 1.22079 0.99746 0.98914 0.95996 1.20900 0.92235 0.86665 0.98295 1.43977 1.53990 1.10184 1.23477 1.19115 1.45914 0.84146 0.89208 0.92057 1.25303 0.99994 0.98184 0.95620 1.69901 1.54208 1.22159 1.08731 0.86347 0.78136 0.82415 0.79680 1.20847 1.21577 1.20968 1.20857 0.92004 0.95315 0.87306 1.22208 0.99272 0.95773 0.99891 1.67572 1.04892 1.29415 1.23290 0.89028 0.89608 0.89446 0.83025 0.82262 0.72234 0.91351 0.90992 0.91065 0.92317 0.93521 0.96356 0.92849 0.93500 0.96582 0.88692 0.93180 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.17 36.00 0.37 -0.18 16 2 C 0.24 1.97 6.78 -82.61 -0.56 1.41 16 3 C -0.25 -1.69 9.73 -39.42 -0.38 -2.07 16 4 C 0.04 0.33 9.67 -39.32 -0.38 -0.05 16 5 C -0.19 -2.30 6.88 -79.60 -0.55 -2.85 16 6 N 0.06 0.81 4.45 34.13 0.15 0.96 16 7 O -0.16 -2.29 18.54 -29.46 -0.55 -2.84 16 8 O -0.20 -3.04 15.76 -29.46 -0.46 -3.50 16 9 C 0.47 6.14 7.46 -155.02 -1.16 4.99 16 10 N -0.68 -9.46 5.27 -60.43 -0.32 -9.78 16 11 C 0.12 1.73 5.09 -4.04 -0.02 1.71 16 12 C -0.09 -1.52 2.19 -90.58 -0.20 -1.71 16 13 C -0.13 -2.26 5.25 -26.61 -0.14 -2.40 16 14 C 0.15 3.12 6.52 -3.72 -0.02 3.09 16 15 N -0.59 -14.97 2.99 -172.32 -0.52 -15.49 16 16 C -0.25 -7.02 9.56 -15.06 -0.14 -7.16 16 17 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 18 C 0.01 0.21 5.25 -17.43 -0.09 0.12 16 19 N -0.91 -26.19 10.79 55.49 0.60 -25.59 16 20 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 4.06 5.23 -3.71 -0.02 4.04 16 25 C -0.13 -2.44 5.36 -26.61 -0.14 -2.59 16 26 N -0.53 -6.20 9.49 -8.67 -0.08 -6.29 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.21 8.07 -51.93 -0.42 -0.20 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 31 H 0.16 1.04 7.71 -52.49 -0.40 0.64 16 32 H 0.43 6.24 4.16 -40.98 -0.17 6.07 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.75 7.15 -51.93 -0.37 0.38 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 359.99 15.07 5.42 5.42 Total: -1.00 -31.23 359.99 -10.50 -41.74 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.29 Total: 2.30 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.44 Total: -3.65 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.17 Total: -56.18 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -1.01 Total: -6.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.23 -10.50 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360876327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.685 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds