Wall clock time and date at job start Tue Mar 31 2020 12:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38062 * 119.57234 * 2 1 4 4 C 1.38840 * 119.32778 * 179.74930 * 3 2 1 5 5 C 1.38348 * 118.50358 * 0.51474 * 4 3 2 6 6 N 1.47996 * 120.45122 * 179.70998 * 5 4 3 7 7 O 1.21800 * 120.00252 * 353.40373 * 6 5 4 8 8 O 1.21796 * 120.00154 * 173.41059 * 6 5 4 9 9 C 1.39094 * 119.09879 * 359.72472 * 5 4 3 10 10 N 1.38998 * 119.70648 * 180.02562 * 9 5 4 11 11 C 1.46500 * 120.00119 * 174.52310 * 10 9 5 12 12 C 1.53005 * 109.47098 * 180.02562 * 11 10 9 13 13 C 1.53041 * 109.46079 * 295.06707 * 12 11 10 14 14 C 1.53184 * 109.31389 * 178.61722 * 13 12 11 15 15 N 1.46919 * 108.77889 * 54.63472 * 14 13 12 16 16 C 1.36943 * 120.63485 * 126.41395 * 15 14 13 17 17 H 1.07996 * 119.99508 * 324.79274 * 16 15 14 18 18 C 1.38813 * 120.00030 * 144.79393 * 16 15 14 19 19 N 1.31615 * 119.99903 * 359.71377 * 18 16 15 20 20 Si 1.86796 * 119.99596 * 179.71436 * 18 16 15 21 21 H 1.48501 * 109.47331 * 60.00040 * 20 18 16 22 22 H 1.48505 * 109.47115 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47378 * 299.99822 * 20 18 16 24 24 C 1.46934 * 118.73648 * 306.39316 * 15 14 13 25 25 C 1.53036 * 109.45833 * 175.00110 * 12 11 10 26 26 N 1.31942 * 119.57063 * 180.26522 * 2 1 3 27 27 H 1.09001 * 109.47136 * 269.73357 * 1 2 3 28 28 H 1.09005 * 109.47411 * 29.73022 * 1 2 3 29 29 H 1.09000 * 109.47660 * 149.72850 * 1 2 3 30 30 H 1.07996 * 120.34106 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.75249 * 180.23443 * 4 3 2 32 32 H 0.97001 * 120.00073 * 354.52480 * 10 9 5 33 33 H 1.08997 * 109.47076 * 299.99685 * 11 10 9 34 34 H 1.08996 * 109.47365 * 60.00039 * 11 10 9 35 35 H 1.08996 * 109.45909 * 55.02433 * 12 11 10 36 36 H 1.09006 * 109.49648 * 298.56647 * 13 12 11 37 37 H 1.09003 * 109.49803 * 58.66125 * 13 12 11 38 38 H 1.09003 * 109.58940 * 294.84505 * 14 13 12 39 39 H 1.09002 * 109.70484 * 174.49325 * 14 13 12 40 40 H 0.97002 * 119.99705 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58565 * 293.81718 * 24 15 14 42 42 H 1.09003 * 109.70251 * 173.46337 * 24 15 14 43 43 H 1.09004 * 109.50072 * 301.33360 * 25 12 11 44 44 H 1.09002 * 109.50407 * 61.43125 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5767 1.1949 0.0053 5 6 4.2318 -0.0237 -0.0005 6 7 5.7106 -0.0803 -0.0017 7 8 6.3592 0.9440 -0.1187 8 8 6.2792 -1.1511 0.1143 9 6 3.4815 -1.1950 -0.0055 10 7 4.1266 -2.4262 -0.0109 11 6 3.3480 -3.6617 0.1049 12 6 4.2927 -4.8648 0.0737 13 6 4.9757 -4.9414 -1.2937 14 6 5.9463 -6.1264 -1.3096 15 7 5.2139 -7.3428 -0.9320 16 6 5.2449 -8.4530 -1.7330 17 1 5.2761 -8.3433 -2.8069 18 6 5.2363 -9.7194 -1.1646 19 7 5.2040 -9.8530 0.1443 20 14 5.2707 -11.2339 -2.2576 21 1 6.5043 -11.2200 -3.0842 22 1 5.2543 -12.4548 -1.4124 23 1 4.0801 -11.2309 -3.1451 24 6 4.4478 -7.3455 0.3218 25 6 3.4939 -6.1468 0.3193 26 7 2.1581 -1.1476 -0.0053 27 1 -0.3633 -0.0048 1.0277 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3634 -0.8875 -0.5180 30 1 1.6469 2.1352 -0.0004 31 1 4.1329 2.1206 0.0092 32 1 5.0924 -2.4673 -0.0912 33 1 2.7971 -3.6572 1.0454 34 1 2.6465 -3.7284 -0.7267 35 1 5.0485 -4.7532 0.8511 36 1 4.2222 -5.0779 -2.0696 37 1 5.5253 -4.0184 -1.4781 38 1 6.7516 -5.9487 -0.5969 39 1 6.3632 -6.2466 -2.3095 40 1 5.1976 -10.7380 0.5415 41 1 5.1309 -7.2672 1.1676 42 1 3.8739 -8.2689 0.3999 43 1 2.9889 -6.0818 1.2832 44 1 2.7544 -6.2720 -0.4716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360876327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:34 Heat of formation + Delta-G solvation = 34.753850 kcal Electronic energy + Delta-G solvation = -27018.767098 eV Core-core repulsion = 23167.076685 eV Total energy + Delta-G solvation = -3851.690413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.38632 -41.50751 -39.71359 -38.01435 -37.10191 -35.17493 -34.43835 -33.08564 -31.97235 -31.27392 -29.91906 -28.37892 -26.34040 -25.62940 -24.21647 -23.72215 -23.49226 -22.37908 -20.80211 -20.35104 -19.89521 -18.88173 -18.71692 -18.27222 -17.80670 -16.89036 -16.37134 -16.03968 -15.68699 -15.56473 -15.31652 -15.23762 -14.87655 -14.72569 -14.11226 -13.98736 -13.86492 -13.75548 -13.37441 -13.06529 -13.01246 -12.75780 -12.72365 -12.64434 -12.40930 -12.39954 -12.26891 -12.02193 -11.90063 -11.72687 -11.54849 -11.26649 -11.20161 -11.04683 -10.88868 -10.54696 -9.19599 -8.57223 -7.87420 -5.43907 -1.22217 0.09289 0.22331 0.37493 1.45734 1.48042 1.54668 1.83141 2.37580 2.49039 3.02341 3.20522 3.27818 3.58817 3.68880 3.69964 3.77893 3.87895 4.03071 4.14693 4.45471 4.48501 4.53356 4.61215 4.66749 4.69278 4.74390 4.78513 4.82350 4.91856 4.97428 5.03955 5.07120 5.20440 5.23496 5.25027 5.34007 5.39506 5.55185 5.63575 5.76031 5.83009 6.01551 6.44033 6.47707 6.79536 7.17107 7.84540 8.39295 9.17041 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002808 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.152045 B = 9968.907137 C =10875.023270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.229 3.771 3 C -0.220 4.220 4 C 0.034 3.966 5 C -0.204 4.204 6 N 0.058 4.942 7 O -0.161 6.161 8 O -0.241 6.241 9 C 0.457 3.543 10 N -0.693 5.693 11 C 0.142 3.858 12 C -0.083 4.083 13 C -0.113 4.113 14 C 0.141 3.859 15 N -0.612 5.612 16 C -0.269 4.269 17 H 0.062 0.938 18 C -0.045 4.045 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.275 1.275 24 C 0.176 3.824 25 C -0.118 4.118 26 N -0.552 5.552 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.198 0.802 31 H 0.183 0.817 32 H 0.422 0.578 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.051 0.949 40 H 0.251 0.749 41 H -0.008 1.008 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 26.183 0.953 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 C -0.243 4.243 4 C 0.008 3.992 5 C -0.299 4.299 6 N 0.561 4.439 7 O -0.380 6.380 8 O -0.431 6.431 9 C 0.214 3.786 10 N -0.332 5.332 11 C 0.019 3.981 12 C -0.102 4.102 13 C -0.152 4.152 14 C 0.016 3.984 15 N -0.336 5.336 16 C -0.400 4.400 17 H 0.080 0.920 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.798 3.202 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.200 1.200 24 C 0.051 3.949 25 C -0.157 4.157 26 N -0.274 5.274 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.096 0.904 30 H 0.215 0.785 31 H 0.200 0.800 32 H 0.271 0.729 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.010 0.990 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.007 24.896 1.063 28.109 hybrid contribution 1.866 -0.710 -0.338 2.024 sum -11.142 24.187 0.725 26.639 Atomic orbital electron populations 1.21081 0.84691 1.05746 1.05315 1.22313 0.99244 0.87019 0.82679 1.22195 0.91865 1.01239 1.08977 1.21677 0.95777 0.95746 0.86017 1.21677 0.78055 0.97977 1.32191 1.43590 1.04033 0.99824 0.96443 1.94464 1.66593 1.24170 1.52747 1.94247 1.72462 1.18064 1.58299 1.18280 0.88982 0.84866 0.86423 1.46212 1.11981 1.02684 1.72357 1.21445 0.93378 0.80968 1.02349 1.21179 0.97397 0.93813 0.97814 1.21887 0.98900 0.97756 0.96696 1.21020 0.92836 0.86773 0.97787 1.44238 1.55031 1.10824 1.23508 1.19441 1.45556 0.85292 0.89671 0.92041 1.26062 1.00123 1.00992 0.96894 1.70092 1.55272 1.22350 1.10264 0.85303 0.78352 0.78588 0.77923 1.20341 1.21759 1.20040 1.20652 0.91920 0.96214 0.86144 1.21968 0.98116 0.94454 1.01171 1.67638 1.04157 1.31407 1.24152 0.87585 0.86414 0.90352 0.78465 0.79973 0.72863 0.90683 0.91035 0.91698 0.92563 0.91697 0.97052 0.93070 0.93961 0.98965 0.91968 0.90911 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.17 71.23 0.72 0.12 16 2 C 0.23 2.99 6.78 42.50 0.29 3.28 16 3 C -0.22 -1.98 9.73 22.37 0.22 -1.77 16 4 C 0.03 0.48 9.67 22.44 0.22 0.70 16 5 C -0.20 -4.73 6.88 36.61 0.25 -4.48 16 6 N 0.06 1.65 4.45 -45.93 -0.20 1.45 16 7 O -0.16 -4.45 18.54 18.89 0.35 -4.10 16 8 O -0.24 -7.74 15.76 18.89 0.30 -7.45 16 9 C 0.46 11.42 7.46 133.05 0.99 12.41 16 10 N -0.69 -19.11 5.27 -345.09 -1.82 -20.93 16 11 C 0.14 3.89 5.09 86.38 0.44 4.33 16 12 C -0.08 -2.73 2.19 -10.77 -0.02 -2.76 16 13 C -0.11 -4.01 5.25 30.67 0.16 -3.85 16 14 C 0.14 6.21 6.52 86.36 0.56 6.77 16 15 N -0.61 -31.86 2.99 -699.10 -2.09 -33.95 16 16 C -0.27 -15.23 9.56 84.03 0.80 -14.43 16 17 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 18 C -0.05 -2.56 5.25 84.86 0.45 -2.12 16 19 N -0.93 -55.84 10.79 21.65 0.23 -55.60 16 20 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.18 8.70 5.23 86.36 0.45 9.15 16 25 C -0.12 -4.38 5.36 30.67 0.16 -4.22 16 26 N -0.55 -11.76 9.49 -181.35 -1.72 -13.48 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.12 -0.08 8.07 -2.38 -0.02 -0.10 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 31 H 0.18 1.71 7.71 -2.91 -0.02 1.68 16 32 H 0.42 12.54 4.16 -95.27 -0.40 12.14 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.06 2.08 7.15 -2.39 -0.02 2.06 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 43 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.29 359.99 3.39 -67.90 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.62 Total: 15.57 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.70 Total: 3.14 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.60 Total: -122.51 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.65 Total: -11.54 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.29 3.39 -67.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360876327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.655 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds