Wall clock time and date at job start Tue Mar 31 2020 12:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00449 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99570 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46843 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47270 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99947 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.27548 * 12 11 10 15 15 C 1.39613 * 119.99864 * 179.72694 * 14 12 11 16 16 N 1.32238 * 119.73922 * 359.72802 * 15 14 12 17 17 C 1.31991 * 121.70790 * 179.75311 * 16 15 14 18 18 C 1.38069 * 120.99540 * 0.52877 * 17 16 15 19 19 C 1.38777 * 119.36874 * 359.73758 * 18 17 16 20 20 C 1.38945 * 118.42807 * 0.02562 * 19 18 17 21 21 N 1.39925 * 120.50663 * 179.97438 * 20 19 18 22 22 C 1.47009 * 111.00062 * 63.65954 * 21 20 19 23 23 C 1.53103 * 109.25819 * 177.60358 * 22 21 20 24 24 O 1.43012 * 109.25593 * 56.85135 * 23 22 21 25 25 C 1.43024 * 113.73741 * 301.32508 * 24 23 22 26 26 C 1.47014 * 111.00318 * 300.02084 * 21 20 19 27 27 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47034 * 60.01137 * 9 7 2 29 29 H 1.08997 * 109.47846 * 300.00091 * 9 7 2 30 30 H 1.08998 * 109.47202 * 60.00416 * 10 9 7 31 31 H 1.08997 * 109.47419 * 300.00314 * 10 9 7 32 32 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 33 33 H 0.97000 * 120.00483 * 359.73178 * 14 12 11 34 34 H 1.08005 * 119.49741 * 180.26932 * 17 16 15 35 35 H 1.07993 * 120.31606 * 179.76981 * 18 17 16 36 36 H 1.07994 * 120.78262 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.51066 * 297.53634 * 22 21 20 38 38 H 1.08999 * 109.50961 * 57.66969 * 22 21 20 39 39 H 1.08996 * 109.50437 * 296.91355 * 23 22 21 40 40 H 1.08996 * 109.50513 * 176.78332 * 23 22 21 41 41 H 1.09001 * 109.50817 * 298.74037 * 25 24 23 42 42 H 1.08993 * 109.53848 * 178.63297 * 25 24 23 43 43 H 1.08999 * 109.50632 * 302.32660 * 26 21 20 44 44 H 1.09000 * 109.50511 * 62.45993 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.1603 -3.8038 -0.0003 13 8 5.5524 -4.8567 -0.0003 14 7 7.5081 -3.8038 0.0053 15 6 8.2061 -5.0128 0.0118 16 7 7.5397 -6.1550 0.0177 17 6 8.1600 -7.3201 0.0191 18 6 9.5389 -7.3915 0.0252 19 6 10.2811 -6.2189 0.0245 20 6 9.6025 -5.0065 0.0181 21 7 10.3075 -3.7978 0.0176 22 6 11.1042 -3.6531 -1.2093 23 6 11.8102 -2.2946 -1.1957 24 8 12.6105 -2.1908 -0.0151 25 6 11.8663 -2.3265 1.1988 26 6 11.1610 -3.6852 1.2093 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6805 0.8890 29 1 3.8745 -0.6800 -0.8911 30 1 3.6578 -3.1506 -0.8907 31 1 3.6584 -3.1502 0.8892 32 1 5.9715 -1.7966 -0.0006 33 1 7.9931 -2.9637 0.0050 34 1 7.5802 -8.2313 0.0196 35 1 10.0350 -8.3507 0.0300 36 1 11.3606 -6.2481 0.0288 37 1 11.8474 -4.4489 -1.2568 38 1 10.4489 -3.7140 -2.0782 39 1 11.0664 -1.4979 -1.2025 40 1 12.4469 -2.2065 -2.0759 41 1 11.1242 -1.5306 1.2616 42 1 12.5432 -2.2610 2.0506 43 1 10.5471 -3.7696 2.1060 44 1 11.9051 -4.4817 1.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370239535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:46 Heat of formation + Delta-G solvation = -9.068268 kcal Electronic energy + Delta-G solvation = -26704.476015 eV Core-core repulsion = 22850.885332 eV Total energy + Delta-G solvation = -3853.590683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28345 -39.83937 -39.01489 -36.29482 -35.31392 -34.44856 -32.79643 -31.80857 -31.67007 -30.52540 -29.45965 -26.97477 -25.15933 -24.47079 -23.83417 -22.69601 -20.99992 -20.75990 -20.50064 -18.57213 -17.85732 -17.55311 -16.82691 -16.60991 -16.15582 -15.75829 -15.58107 -15.44536 -15.31236 -14.92950 -14.45269 -14.23699 -14.08969 -14.04122 -13.71075 -13.44676 -13.23580 -12.87528 -12.63653 -12.59376 -12.04825 -11.86819 -11.47763 -11.27551 -11.08960 -10.80686 -10.42741 -10.34261 -10.21242 -10.03629 -9.91640 -9.86975 -9.36187 -9.25952 -8.89909 -8.64129 -8.55721 -8.16781 -6.09858 -4.09865 0.85636 1.11695 2.65110 3.12129 3.25895 3.33424 3.34675 3.34991 3.42968 3.85486 4.17509 4.38587 4.39946 4.41825 4.50304 4.66227 4.68209 4.70968 4.71751 4.89397 4.99246 5.08565 5.16555 5.19559 5.23066 5.30917 5.41762 5.44984 5.72260 5.85904 6.05940 6.13889 6.25280 6.28496 6.35044 6.58965 6.67070 6.76979 6.84716 6.97444 7.21403 7.25691 7.68193 7.86855 8.29770 8.46719 8.87915 8.95203 9.50173 11.03236 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.002960 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.389736 B = 9458.390977 C =11134.416998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.149 3.851 11 N -0.738 5.738 12 C 0.686 3.314 13 O -0.533 6.533 14 N -0.662 5.662 15 C 0.416 3.584 16 N -0.466 5.466 17 C 0.137 3.863 18 C -0.208 4.208 19 C -0.074 4.074 20 C -0.017 4.017 21 N -0.493 5.493 22 C 0.021 3.979 23 C 0.063 3.937 24 O -0.385 6.385 25 C 0.063 3.937 26 C 0.022 3.978 27 H 0.265 0.735 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.391 0.609 33 H 0.418 0.582 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.581 -8.527 0.044 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.393 5.393 12 C 0.385 3.615 13 O -0.404 6.404 14 N -0.310 5.310 15 C 0.181 3.819 16 N -0.181 5.181 17 C -0.021 4.021 18 C -0.230 4.230 19 C -0.101 4.101 20 C -0.117 4.117 21 N -0.216 5.216 22 C -0.106 4.106 23 C -0.014 4.014 24 O -0.303 6.303 25 C -0.014 4.014 26 C -0.105 4.105 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.224 0.776 33 H 0.255 0.745 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 27.633 -8.811 0.057 29.004 hybrid contribution 2.009 0.950 -0.032 2.223 sum 29.643 -7.861 0.025 30.667 Atomic orbital electron populations 1.69906 1.06293 1.27033 1.50472 1.24998 0.94759 0.99131 0.94405 0.86747 0.80258 0.83559 0.78474 1.20245 1.21297 1.19091 1.20916 0.88608 0.94935 1.51571 0.90545 1.19798 0.97948 0.91348 0.96819 1.21418 0.74287 0.99974 1.01680 1.45580 1.09037 1.05995 1.78674 1.16171 0.80774 0.85406 0.79172 1.91033 1.66304 1.29628 1.53446 1.42851 1.06002 1.07208 1.74931 1.18108 0.85776 0.86207 0.91776 1.67863 1.38565 0.96721 1.14908 1.22773 0.91771 0.95350 0.92223 1.21929 0.95399 0.98828 1.06886 1.21748 1.00222 0.92207 0.95971 1.18973 0.91678 0.89568 1.11485 1.59680 1.27745 1.31252 1.02912 1.22907 0.96475 0.98473 0.92695 1.22704 0.94826 0.95541 0.88328 1.88003 1.34934 1.93340 1.14037 1.22701 0.95714 0.95487 0.87500 1.22901 0.95750 0.98498 0.93394 0.92558 0.96001 0.96433 0.91983 0.91965 0.77575 0.74497 0.82306 0.84906 0.85195 0.93305 0.89279 0.91848 0.88133 0.91854 0.88138 0.89268 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -12.45 5.56 -65.23 -0.36 -12.81 16 12 C 0.69 12.10 8.53 -86.92 -0.74 11.36 16 13 O -0.53 -11.62 14.60 5.29 0.08 -11.54 16 14 N -0.66 -9.08 5.39 -15.63 -0.08 -9.17 16 15 C 0.42 5.70 7.45 -154.37 -1.15 4.55 16 16 N -0.47 -7.21 7.87 -12.18 -0.10 -7.31 16 17 C 0.14 1.57 11.17 -17.55 -0.20 1.37 16 18 C -0.21 -1.81 10.10 -39.44 -0.40 -2.21 16 19 C -0.07 -0.64 8.76 -39.12 -0.34 -0.98 16 20 C -0.02 -0.17 4.77 -83.38 -0.40 -0.57 16 21 N -0.49 -4.12 3.87 -170.49 -0.66 -4.78 16 22 C 0.02 0.15 5.41 -3.71 -0.02 0.13 16 23 C 0.06 0.42 7.01 37.21 0.26 0.68 16 24 O -0.38 -3.18 10.83 -35.23 -0.38 -3.56 16 25 C 0.06 0.42 7.01 37.21 0.26 0.68 16 26 C 0.02 0.15 5.37 -3.71 -0.02 0.13 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.39 5.39 8.49 -40.82 -0.35 5.04 16 33 H 0.42 4.53 7.98 -40.82 -0.33 4.21 16 34 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.87 7.19 -52.49 -0.38 0.49 16 37 H 0.05 0.34 7.48 -51.93 -0.39 -0.04 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.34 7.28 -51.93 -0.38 -0.04 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -35.23 361.50 -9.66 -44.90 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.40 Total: 4.65 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -3.31 Total: 4.49 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.43 Total: -60.72 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.30 Total: -15.10 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.23 -9.66 -44.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370239535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.827 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds