Wall clock time and date at job start Tue Mar 31 2020 12:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00449 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99570 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46843 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47270 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99947 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.27548 * 12 11 10 15 15 C 1.39613 * 119.99864 * 179.72694 * 14 12 11 16 16 N 1.32238 * 119.73922 * 359.72802 * 15 14 12 17 17 C 1.31991 * 121.70790 * 179.75311 * 16 15 14 18 18 C 1.38069 * 120.99540 * 0.52877 * 17 16 15 19 19 C 1.38777 * 119.36874 * 359.73758 * 18 17 16 20 20 C 1.38945 * 118.42807 * 0.02562 * 19 18 17 21 21 N 1.39925 * 120.50663 * 179.97438 * 20 19 18 22 22 C 1.47009 * 111.00062 * 63.65954 * 21 20 19 23 23 C 1.53103 * 109.25819 * 177.60358 * 22 21 20 24 24 O 1.43012 * 109.25593 * 56.85135 * 23 22 21 25 25 C 1.43024 * 113.73741 * 301.32508 * 24 23 22 26 26 C 1.47014 * 111.00318 * 300.02084 * 21 20 19 27 27 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47034 * 60.01137 * 9 7 2 29 29 H 1.08997 * 109.47846 * 300.00091 * 9 7 2 30 30 H 1.08998 * 109.47202 * 60.00416 * 10 9 7 31 31 H 1.08997 * 109.47419 * 300.00314 * 10 9 7 32 32 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 33 33 H 0.97000 * 120.00483 * 359.73178 * 14 12 11 34 34 H 1.08005 * 119.49741 * 180.26932 * 17 16 15 35 35 H 1.07993 * 120.31606 * 179.76981 * 18 17 16 36 36 H 1.07994 * 120.78262 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.51066 * 297.53634 * 22 21 20 38 38 H 1.08999 * 109.50961 * 57.66969 * 22 21 20 39 39 H 1.08996 * 109.50437 * 296.91355 * 23 22 21 40 40 H 1.08996 * 109.50513 * 176.78332 * 23 22 21 41 41 H 1.09001 * 109.50817 * 298.74037 * 25 24 23 42 42 H 1.08993 * 109.53848 * 178.63297 * 25 24 23 43 43 H 1.08999 * 109.50632 * 302.32660 * 26 21 20 44 44 H 1.09000 * 109.50511 * 62.45993 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.1603 -3.8038 -0.0003 13 8 5.5524 -4.8567 -0.0003 14 7 7.5081 -3.8038 0.0053 15 6 8.2061 -5.0128 0.0118 16 7 7.5397 -6.1550 0.0177 17 6 8.1600 -7.3201 0.0191 18 6 9.5389 -7.3915 0.0252 19 6 10.2811 -6.2189 0.0245 20 6 9.6025 -5.0065 0.0181 21 7 10.3075 -3.7978 0.0176 22 6 11.1042 -3.6531 -1.2093 23 6 11.8102 -2.2946 -1.1957 24 8 12.6105 -2.1908 -0.0151 25 6 11.8663 -2.3265 1.1988 26 6 11.1610 -3.6852 1.2093 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6805 0.8890 29 1 3.8745 -0.6800 -0.8911 30 1 3.6578 -3.1506 -0.8907 31 1 3.6584 -3.1502 0.8892 32 1 5.9715 -1.7966 -0.0006 33 1 7.9931 -2.9637 0.0050 34 1 7.5802 -8.2313 0.0196 35 1 10.0350 -8.3507 0.0300 36 1 11.3606 -6.2481 0.0288 37 1 11.8474 -4.4489 -1.2568 38 1 10.4489 -3.7140 -2.0782 39 1 11.0664 -1.4979 -1.2025 40 1 12.4469 -2.2065 -2.0759 41 1 11.1242 -1.5306 1.2616 42 1 12.5432 -2.2610 2.0506 43 1 10.5471 -3.7696 2.1060 44 1 11.9051 -4.4817 1.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370239535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:45 Heat of formation + Delta-G solvation = -35.715809 kcal Electronic energy + Delta-G solvation = -26705.631539 eV Core-core repulsion = 22850.885332 eV Total energy + Delta-G solvation = -3854.746207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16100 -40.83787 -39.91562 -36.96471 -36.80106 -35.77374 -34.78300 -32.71460 -32.17830 -32.02347 -30.60006 -27.66368 -26.86532 -25.00092 -24.88126 -23.56561 -22.63536 -22.00891 -21.30124 -19.74273 -18.95636 -18.87755 -18.22188 -17.17962 -17.10643 -16.84815 -16.38615 -16.26672 -16.17425 -16.03675 -15.83444 -15.39830 -15.36221 -15.21072 -14.75819 -14.57930 -14.53382 -14.24568 -13.39469 -13.34388 -13.34018 -13.06125 -12.59889 -12.34860 -12.19887 -12.16988 -11.82508 -11.73807 -11.67376 -11.54336 -11.41862 -10.82263 -10.77851 -10.70695 -10.19311 -10.07857 -9.62476 -9.13571 -8.28955 -6.36341 0.04016 0.30975 1.40074 1.42976 1.46820 1.54300 2.11580 2.38072 2.48114 2.88894 2.94796 3.05268 3.06138 3.63493 3.87430 3.88842 3.93851 4.05379 4.14272 4.18183 4.23918 4.33154 4.37084 4.44977 4.45864 4.57491 4.72381 4.75931 4.81465 4.88243 4.90426 5.04779 5.12630 5.13286 5.31134 5.41707 5.43085 5.51170 5.65828 5.72191 5.84296 6.13427 6.17426 6.23846 6.70259 6.81346 7.25883 7.28017 7.58163 8.88000 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.002960 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.389736 B = 9458.390977 C =11134.416998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.010 4.010 10 C 0.166 3.834 11 N -0.726 5.726 12 C 0.687 3.313 13 O -0.581 6.581 14 N -0.648 5.648 15 C 0.380 3.620 16 N -0.518 5.518 17 C 0.113 3.887 18 C -0.184 4.184 19 C -0.073 4.073 20 C 0.000 4.000 21 N -0.500 5.500 22 C 0.024 3.976 23 C 0.063 3.937 24 O -0.400 6.400 25 C 0.063 3.937 26 C 0.024 3.976 27 H 0.268 0.732 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.410 0.590 33 H 0.430 0.570 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.893 -7.496 0.064 34.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.048 4.048 10 C 0.042 3.958 11 N -0.383 5.383 12 C 0.387 3.613 13 O -0.456 6.456 14 N -0.298 5.298 15 C 0.147 3.853 16 N -0.233 5.233 17 C -0.044 4.044 18 C -0.206 4.206 19 C -0.100 4.100 20 C -0.100 4.100 21 N -0.223 5.223 22 C -0.102 4.102 23 C -0.013 4.013 24 O -0.319 6.319 25 C -0.014 4.014 26 C -0.103 4.103 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.246 0.754 33 H 0.270 0.730 34 H 0.188 0.812 35 H 0.186 0.814 36 H 0.177 0.823 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 32.038 -7.786 0.077 32.971 hybrid contribution 0.711 0.461 -0.039 0.849 sum 32.749 -7.325 0.038 33.559 Atomic orbital electron populations 1.70081 1.08628 1.28441 1.52018 1.26090 0.95692 1.03908 0.93650 0.85521 0.79681 0.77220 0.79341 1.18960 1.21285 1.15868 1.21248 0.91561 0.93405 1.51545 0.95334 1.19639 0.94349 0.92670 0.98166 1.20901 0.76612 0.98435 0.99846 1.45158 1.07422 1.06968 1.78709 1.16276 0.81930 0.84583 0.78551 1.90999 1.67743 1.31281 1.55584 1.42506 1.04328 1.08298 1.74657 1.18352 0.87023 0.85629 0.94341 1.67685 1.40979 0.98329 1.16269 1.23100 0.93406 0.94688 0.93211 1.22274 0.94193 1.00500 1.03645 1.22101 1.01576 0.91440 0.94922 1.18984 0.90444 0.90999 1.09616 1.59657 1.28423 1.30314 1.03896 1.22916 0.96307 0.99107 0.91913 1.22790 0.94994 0.95059 0.88498 1.87988 1.35765 1.93370 1.14751 1.22790 0.95958 0.95013 0.87591 1.22916 0.95565 0.99145 0.92633 0.92322 0.94365 0.94492 0.93983 0.94004 0.75366 0.72951 0.81203 0.81357 0.82342 0.92706 0.89618 0.91874 0.86597 0.91916 0.86565 0.89556 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 42.39 27.47 68.60 1.88 44.28 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 7 C -0.54 -31.13 9.66 25.60 0.25 -30.88 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 10 C 0.17 7.04 5.61 86.38 0.48 7.52 16 11 N -0.73 -24.16 5.56 -478.54 -2.66 -26.82 16 12 C 0.69 24.56 8.53 179.05 1.53 26.09 16 13 O -0.58 -26.41 14.60 -3.98 -0.06 -26.47 16 14 N -0.65 -17.53 5.39 -321.63 -1.73 -19.27 16 15 C 0.38 10.25 7.45 133.02 0.99 11.24 16 16 N -0.52 -16.25 7.87 -192.44 -1.51 -17.77 16 17 C 0.11 2.51 11.17 84.63 0.95 3.45 16 18 C -0.18 -2.70 10.10 22.36 0.23 -2.47 16 19 C -0.07 -1.04 8.76 22.57 0.20 -0.84 16 20 C 0.00 -0.01 4.77 38.36 0.18 0.17 16 21 N -0.50 -7.18 3.87 -693.31 -2.68 -9.87 16 22 C 0.02 0.28 5.41 86.32 0.47 0.75 16 23 C 0.06 0.68 7.01 72.02 0.50 1.18 16 24 O -0.40 -5.54 10.83 -148.98 -1.61 -7.15 16 25 C 0.06 0.67 7.01 72.01 0.50 1.18 16 26 C 0.02 0.28 5.37 86.31 0.46 0.74 16 27 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 28 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 29 H 0.04 1.53 7.57 -2.39 -0.02 1.52 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.41 10.47 8.49 -92.71 -0.79 9.68 16 33 H 0.43 8.81 7.98 -92.71 -0.74 8.07 16 34 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.16 1.40 7.19 -2.91 -0.02 1.38 16 37 H 0.05 0.59 7.48 -2.39 -0.02 0.57 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 0.58 7.28 -2.39 -0.02 0.57 16 Total: -1.00 -80.52 361.50 -1.30 -81.83 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.55 Total: 22.31 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.33 Total: 18.46 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -8.30 Total: -133.25 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.67 Total: -33.62 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Total: -80.52 -1.30 -81.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370239535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.109 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds