Wall clock time and date at job start Tue Mar 31 2020 12:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00314 * 2 1 4 4 C 1.50698 * 109.47060 * 274.99838 * 3 2 1 5 5 H 1.07995 * 120.00101 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99921 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99881 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99787 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47177 * 89.99586 * 8 6 4 10 10 H 1.48503 * 109.46604 * 209.99389 * 8 6 4 11 11 H 1.48496 * 109.47172 * 329.99237 * 8 6 4 12 12 S 1.65603 * 119.99941 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40098 * 23.54338 * 12 2 1 14 14 O 1.42101 * 106.40159 * 156.45955 * 12 2 1 15 15 N 1.65601 * 107.21934 * 270.00232 * 12 2 1 16 16 C 1.46496 * 120.00002 * 64.99862 * 15 12 2 17 17 H 1.08998 * 110.45869 * 26.15230 * 16 15 12 18 18 C 1.54505 * 110.51219 * 263.54809 * 16 15 12 19 19 C 1.54481 * 104.06395 * 241.35691 * 18 16 15 20 20 C 1.53002 * 110.37605 * 142.80994 * 19 18 16 21 21 C 1.53004 * 110.37060 * 265.03287 * 19 18 16 22 22 O 1.44428 * 104.80164 * 23.97354 * 19 18 16 23 23 C 1.44417 * 105.27613 * 319.49196 * 22 19 18 24 24 C 1.53002 * 110.37180 * 281.67817 * 23 22 19 25 25 C 1.52998 * 110.37287 * 159.34358 * 23 22 19 26 26 H 1.08995 * 109.46677 * 270.00208 * 1 2 3 27 27 H 1.09002 * 109.46537 * 29.99806 * 1 2 3 28 28 H 1.08992 * 109.47264 * 149.99768 * 1 2 3 29 29 H 1.08996 * 109.46867 * 34.99909 * 3 2 1 30 30 H 1.08999 * 109.47369 * 154.99954 * 3 2 1 31 31 H 0.96993 * 119.99827 * 180.02562 * 7 6 4 32 32 H 0.96995 * 119.99713 * 244.99811 * 15 12 2 33 33 H 1.09006 * 110.51272 * 359.97438 * 18 16 15 34 34 H 1.09000 * 110.51608 * 122.57603 * 18 16 15 35 35 H 1.08998 * 109.47189 * 59.99711 * 20 19 18 36 36 H 1.08997 * 109.47279 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.46389 * 299.99727 * 20 19 18 38 38 H 1.09007 * 109.47007 * 33.12436 * 21 19 18 39 39 H 1.09008 * 109.46648 * 153.11612 * 21 19 18 40 40 H 1.08991 * 109.47507 * 273.11722 * 21 19 18 41 41 H 1.09000 * 109.47091 * 202.18800 * 24 23 22 42 42 H 1.08996 * 109.47127 * 322.18580 * 24 23 22 43 43 H 1.09003 * 109.47374 * 82.18780 * 24 23 22 44 44 H 1.08999 * 109.46863 * 304.61474 * 25 23 22 45 45 H 1.08998 * 109.47459 * 64.61558 * 25 23 22 46 46 H 1.08999 * 109.47239 * 184.61938 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3416 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 3.0000 2.9508 -1.6663 7 7 3.1252 3.3847 -2.9015 8 14 3.7141 3.9401 -0.2519 9 1 5.1113 3.5052 0.0007 10 1 3.7003 5.3835 -0.6009 11 1 2.8983 3.7182 0.9689 12 16 2.2930 -1.4342 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5760 -1.1570 -0.5439 15 7 2.5381 -1.8580 1.5826 16 6 1.3946 -2.1768 2.4411 17 1 0.5576 -2.5366 1.8427 18 6 0.9770 -0.9402 3.2679 19 6 1.1716 -1.3858 4.7342 20 6 1.7013 -0.2246 5.5780 21 6 -0.1463 -1.9053 5.3124 22 8 2.1485 -2.4477 4.6705 23 6 1.7921 -3.2233 3.5056 24 6 0.6084 -4.1409 3.8184 25 6 2.9907 -4.0435 3.0246 26 1 -0.3632 0.0000 1.0276 27 1 -0.3632 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6502 2.0042 0.5894 30 1 3.1858 1.1176 0.4343 31 1 3.5887 4.2182 -3.0780 32 1 3.4387 -1.8953 1.9408 33 1 1.6217 -0.0917 3.0383 34 1 -0.0665 -0.6886 3.0784 35 1 0.9891 0.6000 5.5490 36 1 1.8334 -0.5549 6.6083 37 1 2.6590 0.1080 5.1778 38 1 -0.7225 -2.3906 4.5245 39 1 0.0629 -2.6240 6.1048 40 1 -0.7180 -1.0715 5.7197 41 1 0.5959 -4.9713 3.1124 42 1 0.7068 -4.5279 4.8327 43 1 -0.3207 -3.5774 3.7330 44 1 3.8367 -3.3799 2.8456 45 1 3.2585 -4.7764 3.7858 46 1 2.7310 -4.5586 2.0998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408133832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:11 Heat of formation + Delta-G solvation = -112.009677 kcal Electronic energy + Delta-G solvation = -27838.329318 eV Core-core repulsion = 24083.425962 eV Total energy + Delta-G solvation = -3754.903357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77568 -36.70504 -35.67958 -35.28035 -35.21854 -33.78037 -32.39519 -31.66607 -28.96912 -28.38434 -28.22110 -26.59514 -25.19163 -23.33956 -21.93676 -20.56852 -20.17444 -19.07266 -17.43586 -16.98246 -16.80082 -16.35348 -15.74764 -15.42975 -15.23242 -15.16672 -14.30918 -14.10861 -13.61666 -13.49955 -13.26966 -13.06279 -12.99444 -12.79913 -12.53878 -12.38874 -12.36802 -12.22960 -12.03918 -12.00968 -11.77885 -11.63867 -11.49209 -11.36679 -11.34101 -11.23724 -11.05799 -10.83835 -10.69639 -10.51407 -10.45994 -10.25689 -10.02244 -9.57370 -9.33900 -8.60767 -8.14726 -6.09525 -4.08907 1.11505 3.25347 3.30439 3.32231 3.39885 3.55213 4.03844 4.35137 4.36815 4.43936 4.66598 4.69576 4.75863 4.78091 4.98753 5.11992 5.13417 5.21818 5.28128 5.31937 5.38883 5.46762 5.53592 5.57825 5.58774 5.59823 5.68650 5.76148 5.84340 5.94820 5.98218 6.01651 6.04124 6.13003 6.14121 6.23810 6.42184 6.69224 6.84678 6.98490 7.11557 7.39680 7.56545 8.47524 8.95405 9.49448 11.04103 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.004888 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.374256 B = 5726.418408 C = 6493.213429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.989 5.989 3 C 0.229 3.771 4 C -0.532 4.532 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.780 3.220 13 O -0.993 6.993 14 O -0.961 6.961 15 N -1.123 6.123 16 C 0.131 3.869 17 H 0.104 0.896 18 C -0.168 4.168 19 C 0.097 3.903 20 C -0.138 4.138 21 C -0.175 4.175 22 O -0.354 6.354 23 C 0.096 3.904 24 C -0.175 4.175 25 C -0.138 4.138 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.414 0.586 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 -11.732 18.409 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.831 5.831 3 C 0.106 3.894 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.788 3.212 13 O -0.976 6.976 14 O -0.945 6.945 15 N -0.882 5.882 16 C 0.022 3.978 17 H 0.122 0.878 18 C -0.207 4.207 19 C 0.058 3.942 20 C -0.196 4.196 21 C -0.232 4.232 22 O -0.274 6.274 23 C 0.055 3.945 24 C -0.232 4.232 25 C -0.195 4.195 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.250 0.750 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.486 -12.090 17.584 22.303 hybrid contribution 0.528 1.003 0.953 1.481 sum -5.958 -11.087 18.537 22.406 Atomic orbital electron populations 1.21419 0.79843 1.03979 1.00150 1.57341 1.14361 1.22488 1.88879 1.19412 0.90780 0.80689 0.98563 1.21378 1.36869 1.07010 0.91876 0.90443 1.24870 0.95365 0.97200 0.95509 1.69893 1.42526 1.22009 1.18869 0.86923 0.80421 0.79733 0.83035 1.19815 1.20971 1.18983 1.02021 0.73443 0.72978 0.72777 1.93531 1.67564 1.59849 1.76696 1.93656 1.40590 1.84763 1.75460 1.56412 1.14374 1.85537 1.31898 1.22072 0.88831 0.94371 0.92541 0.87778 1.23703 1.03343 0.99323 0.94331 1.22280 0.89059 0.88057 0.94800 1.21788 1.01997 0.96136 0.99645 1.22694 0.96705 1.01938 1.01875 1.89212 1.50860 1.41424 1.45920 1.22471 0.95730 0.91378 0.84905 1.22652 0.97842 0.99874 1.02829 1.21757 0.96923 0.99481 1.01344 0.94267 0.90105 0.91328 0.94918 0.95387 0.92515 0.75027 0.88984 0.89595 0.91114 0.92055 0.91641 0.91108 0.91600 0.91758 0.91348 0.91218 0.90962 0.91549 0.91799 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.68 59.85 0.64 2.11 16 2 N -0.99 -19.20 3.23 -123.06 -0.40 -19.60 16 3 C 0.23 5.25 4.15 -5.20 -0.02 5.23 16 4 C -0.53 -15.03 9.94 -34.44 -0.34 -15.38 16 5 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -27.45 13.96 55.43 0.77 -26.67 16 8 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 12 S 2.78 52.66 6.09 -107.50 -0.65 52.01 16 13 O -0.99 -19.81 16.12 -57.17 -0.92 -20.73 16 14 O -0.96 -22.44 17.11 -57.17 -0.98 -23.42 16 15 N -1.12 -15.76 4.79 -3.56 -0.02 -15.78 16 16 C 0.13 1.54 3.07 -66.37 -0.20 1.34 16 17 H 0.10 1.20 7.30 -51.93 -0.38 0.82 16 18 C -0.17 -1.81 5.48 -25.16 -0.14 -1.95 16 19 C 0.10 0.97 1.22 -89.84 -0.11 0.86 16 20 C -0.14 -1.29 8.73 37.16 0.32 -0.97 16 21 C -0.18 -1.39 7.59 37.16 0.28 -1.10 16 22 O -0.35 -4.09 10.61 -35.23 -0.37 -4.47 16 23 C 0.10 1.02 1.17 -89.84 -0.11 0.91 16 24 C -0.17 -1.49 7.59 37.16 0.28 -1.21 16 25 C -0.14 -1.41 8.14 37.16 0.30 -1.11 16 26 H 0.04 0.48 7.05 -51.93 -0.37 0.12 16 27 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 29 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 30 H 0.03 0.65 7.04 -51.93 -0.37 0.28 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.41 5.33 6.97 -34.47 -0.24 5.09 16 33 H 0.09 1.12 7.69 -51.93 -0.40 0.72 16 34 H 0.09 0.80 7.14 -51.93 -0.37 0.43 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.51 5.01 -51.92 -0.26 0.25 16 39 H 0.06 0.52 8.07 -51.92 -0.42 0.10 16 40 H 0.06 0.44 7.94 -51.93 -0.41 0.03 16 41 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 42 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 43 H 0.07 0.55 5.00 -51.93 -0.26 0.29 16 44 H 0.07 0.70 6.37 -51.93 -0.33 0.36 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -34.74 364.28 -8.43 -43.17 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.49 Total: 2.97 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 0.81 Total: -9.25 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.36 Total: -62.05 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -2.27 Total: -48.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: 52.66 SS G_CDS: -0.65 Total: 52.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.74 -8.43 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408133832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.837 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds