Wall clock time and date at job start Tue Mar 31 2020 12:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00314 * 2 1 4 4 C 1.50698 * 109.47060 * 274.99838 * 3 2 1 5 5 H 1.07995 * 120.00101 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99921 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99881 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99787 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47177 * 89.99586 * 8 6 4 10 10 H 1.48503 * 109.46604 * 209.99389 * 8 6 4 11 11 H 1.48496 * 109.47172 * 329.99237 * 8 6 4 12 12 S 1.65603 * 119.99941 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40098 * 23.54338 * 12 2 1 14 14 O 1.42101 * 106.40159 * 156.45955 * 12 2 1 15 15 N 1.65601 * 107.21934 * 270.00232 * 12 2 1 16 16 C 1.46496 * 120.00002 * 64.99862 * 15 12 2 17 17 H 1.08998 * 110.45869 * 26.15230 * 16 15 12 18 18 C 1.54505 * 110.51219 * 263.54809 * 16 15 12 19 19 C 1.54481 * 104.06395 * 241.35691 * 18 16 15 20 20 C 1.53002 * 110.37605 * 142.80994 * 19 18 16 21 21 C 1.53004 * 110.37060 * 265.03287 * 19 18 16 22 22 O 1.44428 * 104.80164 * 23.97354 * 19 18 16 23 23 C 1.44417 * 105.27613 * 319.49196 * 22 19 18 24 24 C 1.53002 * 110.37180 * 281.67817 * 23 22 19 25 25 C 1.52998 * 110.37287 * 159.34358 * 23 22 19 26 26 H 1.08995 * 109.46677 * 270.00208 * 1 2 3 27 27 H 1.09002 * 109.46537 * 29.99806 * 1 2 3 28 28 H 1.08992 * 109.47264 * 149.99768 * 1 2 3 29 29 H 1.08996 * 109.46867 * 34.99909 * 3 2 1 30 30 H 1.08999 * 109.47369 * 154.99954 * 3 2 1 31 31 H 0.96993 * 119.99827 * 180.02562 * 7 6 4 32 32 H 0.96995 * 119.99713 * 244.99811 * 15 12 2 33 33 H 1.09006 * 110.51272 * 359.97438 * 18 16 15 34 34 H 1.09000 * 110.51608 * 122.57603 * 18 16 15 35 35 H 1.08998 * 109.47189 * 59.99711 * 20 19 18 36 36 H 1.08997 * 109.47279 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.46389 * 299.99727 * 20 19 18 38 38 H 1.09007 * 109.47007 * 33.12436 * 21 19 18 39 39 H 1.09008 * 109.46648 * 153.11612 * 21 19 18 40 40 H 1.08991 * 109.47507 * 273.11722 * 21 19 18 41 41 H 1.09000 * 109.47091 * 202.18800 * 24 23 22 42 42 H 1.08996 * 109.47127 * 322.18580 * 24 23 22 43 43 H 1.09003 * 109.47374 * 82.18780 * 24 23 22 44 44 H 1.08999 * 109.46863 * 304.61474 * 25 23 22 45 45 H 1.08998 * 109.47459 * 64.61558 * 25 23 22 46 46 H 1.08999 * 109.47239 * 184.61938 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3416 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 3.0000 2.9508 -1.6663 7 7 3.1252 3.3847 -2.9015 8 14 3.7141 3.9401 -0.2519 9 1 5.1113 3.5052 0.0007 10 1 3.7003 5.3835 -0.6009 11 1 2.8983 3.7182 0.9689 12 16 2.2930 -1.4342 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5760 -1.1570 -0.5439 15 7 2.5381 -1.8580 1.5826 16 6 1.3946 -2.1768 2.4411 17 1 0.5576 -2.5366 1.8427 18 6 0.9770 -0.9402 3.2679 19 6 1.1716 -1.3858 4.7342 20 6 1.7013 -0.2246 5.5780 21 6 -0.1463 -1.9053 5.3124 22 8 2.1485 -2.4477 4.6705 23 6 1.7921 -3.2233 3.5056 24 6 0.6084 -4.1409 3.8184 25 6 2.9907 -4.0435 3.0246 26 1 -0.3632 0.0000 1.0276 27 1 -0.3632 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6502 2.0042 0.5894 30 1 3.1858 1.1176 0.4343 31 1 3.5887 4.2182 -3.0780 32 1 3.4387 -1.8953 1.9408 33 1 1.6217 -0.0917 3.0383 34 1 -0.0665 -0.6886 3.0784 35 1 0.9891 0.6000 5.5490 36 1 1.8334 -0.5549 6.6083 37 1 2.6590 0.1080 5.1778 38 1 -0.7225 -2.3906 4.5245 39 1 0.0629 -2.6240 6.1048 40 1 -0.7180 -1.0715 5.7197 41 1 0.5959 -4.9713 3.1124 42 1 0.7068 -4.5279 4.8327 43 1 -0.3207 -3.5774 3.7330 44 1 3.8367 -3.3799 2.8456 45 1 3.2585 -4.7764 3.7858 46 1 2.7310 -4.5586 2.0998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408133832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:10 Heat of formation + Delta-G solvation = -139.070951 kcal Electronic energy + Delta-G solvation = -27839.502783 eV Core-core repulsion = 24083.425962 eV Total energy + Delta-G solvation = -3756.076822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.58062 -38.33094 -37.30187 -36.89413 -36.21260 -34.63255 -34.46217 -32.48056 -30.30027 -29.76653 -28.93872 -27.26765 -26.77711 -24.19216 -23.83171 -21.36508 -21.01859 -20.43172 -19.17786 -18.73464 -18.27444 -17.60788 -16.87354 -16.47658 -16.26658 -16.09140 -15.97533 -15.42030 -14.80587 -14.67415 -14.51156 -14.13966 -14.07679 -13.99550 -13.74486 -13.47808 -13.41458 -13.33002 -13.17804 -13.12246 -12.99678 -12.90416 -12.86614 -12.71771 -12.62563 -12.37238 -12.29543 -12.10025 -11.96950 -11.85800 -11.70716 -11.61422 -11.21137 -10.86099 -10.78378 -10.35706 -9.76019 -8.28908 -6.34552 -0.38353 1.36278 1.40549 1.48408 1.98941 2.35134 2.59647 2.79485 3.05301 3.36836 3.57046 3.62719 3.90859 3.94852 4.03385 4.06662 4.10766 4.25690 4.38519 4.48520 4.60943 4.66572 4.68424 4.73144 4.81202 4.83390 4.86581 4.88698 4.93400 4.98944 5.07286 5.07530 5.17850 5.24833 5.27220 5.33498 5.36981 5.39108 5.48713 5.51513 5.70891 6.04973 6.09650 6.31286 6.68793 7.28443 8.88772 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.004888 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.374256 B = 5726.418408 C = 6493.213429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.995 5.995 3 C 0.237 3.763 4 C -0.543 4.543 5 H 0.027 0.973 6 C 0.007 3.993 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.226 1.226 12 S 2.796 3.204 13 O -1.007 7.007 14 O -1.013 7.013 15 N -1.106 6.106 16 C 0.120 3.880 17 H 0.110 0.890 18 C -0.170 4.170 19 C 0.094 3.906 20 C -0.139 4.139 21 C -0.172 4.172 22 O -0.370 6.370 23 C 0.097 3.903 24 C -0.173 4.173 25 C -0.143 4.143 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.421 0.579 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 -11.833 21.858 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.837 5.837 3 C 0.113 3.887 4 C -0.582 4.582 5 H 0.046 0.954 6 C -0.191 4.191 7 N -0.589 5.589 8 Si 0.764 3.236 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.148 1.148 12 S 2.804 3.196 13 O -0.990 6.990 14 O -0.996 6.996 15 N -0.869 5.869 16 C 0.012 3.988 17 H 0.128 0.872 18 C -0.209 4.209 19 C 0.055 3.945 20 C -0.196 4.196 21 C -0.229 4.229 22 O -0.291 6.291 23 C 0.056 3.944 24 C -0.230 4.230 25 C -0.201 4.201 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.258 0.742 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.771 -12.217 21.046 25.546 hybrid contribution 0.871 0.923 -0.162 1.279 sum -6.900 -11.294 20.884 24.725 Atomic orbital electron populations 1.21667 0.77792 1.03616 1.02940 1.57245 1.15779 1.21241 1.89389 1.19174 0.91829 0.82480 0.95261 1.21728 1.36250 1.06709 0.93516 0.95442 1.25930 0.95797 0.98667 0.98670 1.70071 1.44139 1.22916 1.21814 0.85803 0.79757 0.77626 0.80372 1.19764 1.20516 1.14841 1.01288 0.72102 0.72693 0.73528 1.93505 1.67643 1.60087 1.77750 1.93583 1.43118 1.85438 1.77508 1.55940 1.15673 1.84897 1.30415 1.22409 0.87965 0.95756 0.92668 0.87188 1.23748 1.04242 0.98176 0.94722 1.22434 0.89773 0.87909 0.94392 1.21816 1.01651 0.96458 0.99698 1.22665 0.95642 1.02475 1.02074 1.89203 1.51817 1.42014 1.46043 1.22533 0.96486 0.91185 0.84217 1.22652 0.97315 0.99704 1.03323 1.21816 0.96829 0.99691 1.01759 0.89763 0.91214 0.91079 0.92350 0.95116 0.92392 0.74184 0.90195 0.87548 0.89719 0.91622 0.93087 0.90299 0.91585 0.90473 0.90859 0.90606 0.89775 0.92292 0.90719 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.54 10.68 127.77 1.36 3.91 16 2 N -1.00 -37.72 3.23 -543.25 -1.75 -39.48 16 3 C 0.24 10.62 4.15 85.63 0.36 10.98 16 4 C -0.54 -31.35 9.94 25.60 0.25 -31.09 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.41 5.47 84.66 0.46 0.87 16 7 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 8 Si 0.94 42.53 27.47 68.60 1.88 44.41 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.23 -8.71 6.54 99.48 0.65 -8.05 16 12 S 2.80 105.19 6.09 -56.49 -0.34 104.85 16 13 O -1.01 -39.76 16.12 -128.00 -2.06 -41.83 16 14 O -1.01 -48.35 17.11 -128.00 -2.19 -50.54 16 15 N -1.11 -29.62 4.79 -165.18 -0.79 -30.41 16 16 C 0.12 2.53 3.07 46.01 0.14 2.67 16 17 H 0.11 2.22 7.30 -2.39 -0.02 2.20 16 18 C -0.17 -3.12 5.48 31.61 0.17 -2.95 16 19 C 0.09 1.58 1.22 -10.29 -0.01 1.57 16 20 C -0.14 -2.22 8.73 71.98 0.63 -1.59 16 21 C -0.17 -2.08 7.59 71.98 0.55 -1.53 16 22 O -0.37 -7.67 10.61 -148.98 -1.58 -9.25 16 23 C 0.10 1.82 1.17 -10.29 -0.01 1.81 16 24 C -0.17 -2.43 7.59 71.98 0.55 -1.88 16 25 C -0.14 -2.73 8.14 71.98 0.59 -2.14 16 26 H 0.08 1.75 7.05 -2.39 -0.02 1.74 16 27 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 28 H 0.07 2.08 7.02 -2.39 -0.02 2.07 16 29 H 0.06 2.34 7.17 -2.39 -0.02 2.32 16 30 H 0.03 1.37 7.04 -2.39 -0.02 1.36 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.42 10.48 6.97 -96.75 -0.67 9.80 16 33 H 0.08 1.70 7.69 -2.38 -0.02 1.69 16 34 H 0.11 1.50 7.14 -2.39 -0.02 1.48 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.08 0.82 5.01 -2.38 -0.01 0.81 16 39 H 0.07 0.82 8.07 -2.38 -0.02 0.80 16 40 H 0.08 0.75 7.94 -2.39 -0.02 0.73 16 41 H 0.07 0.96 7.95 -2.39 -0.02 0.95 16 42 H 0.07 0.99 8.07 -2.39 -0.02 0.98 16 43 H 0.08 0.98 5.00 -2.39 -0.01 0.96 16 44 H 0.06 1.18 6.37 -2.39 -0.02 1.17 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.89 364.28 -1.26 -79.15 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.24 Total: 22.34 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 5.03 Total: -19.38 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -2.24 Total: -129.75 kcal Atomic # 8 Polarization: -95.79 SS G_CDS: -5.83 Total: -101.62 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Atomic # 16 Polarization: 105.19 SS G_CDS: -0.34 Total: 104.85 kcal Total: -77.89 -1.26 -79.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408133832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.925 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds