Wall clock time and date at job start Tue Mar 31 2020 12:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 S 1.81400 * 109.47102 * 60.00122 * 3 2 1 5 5 O 1.42104 * 109.46876 * 296.38902 * 4 3 2 6 6 C 1.81397 * 102.99785 * 179.97438 * 4 3 2 7 7 C 1.50710 * 109.47056 * 179.97438 * 6 4 3 8 8 C 1.38636 * 119.74617 * 269.73038 * 7 6 4 9 9 C 1.37625 * 120.24407 * 179.71975 * 8 7 6 10 10 C 1.40713 * 119.74305 * 0.56765 * 9 8 7 11 11 C 1.41393 * 120.24527 * 179.67919 * 10 9 8 12 12 H 1.07993 * 120.00685 * 204.40394 * 11 10 9 13 13 C 1.39949 * 119.99591 * 24.40644 * 11 10 9 14 14 N 1.30823 * 120.00440 * 17.85560 * 13 11 10 15 15 Si 1.86802 * 119.99843 * 197.85944 * 13 11 10 16 16 H 1.48506 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47402 * 119.99730 * 15 13 11 18 18 H 1.48508 * 109.46834 * 239.99866 * 15 13 11 19 19 C 1.40721 * 119.51231 * 359.70560 * 10 9 8 20 20 C 1.37618 * 119.74445 * 359.97438 * 19 10 9 21 21 C 1.53004 * 109.46992 * 239.99665 * 2 1 3 22 22 C 1.53000 * 109.47465 * 300.00119 * 21 2 1 23 23 C 1.52998 * 109.47075 * 300.00189 * 22 21 2 24 24 C 1.53002 * 109.47349 * 59.99920 * 23 22 21 25 25 C 1.53000 * 109.46922 * 299.99715 * 24 23 22 26 26 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46925 * 299.99741 * 1 2 3 28 28 H 1.08997 * 109.46658 * 60.00093 * 1 2 3 29 29 H 1.08997 * 109.46837 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46733 * 300.00055 * 3 2 1 31 31 H 1.09001 * 109.47356 * 299.99590 * 6 4 3 32 32 H 1.08999 * 109.47147 * 60.00564 * 6 4 3 33 33 H 1.07998 * 119.87549 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.12778 * 180.27628 * 9 8 7 35 35 H 0.96999 * 120.00251 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.12258 * 179.97438 * 19 10 9 37 37 H 1.08000 * 119.87405 * 180.02562 * 20 19 10 38 38 H 1.09000 * 109.46551 * 179.97438 * 21 2 1 39 39 H 1.09003 * 109.46887 * 60.00259 * 21 2 1 40 40 H 1.08994 * 109.47056 * 179.97438 * 22 21 2 41 41 H 1.08997 * 109.46837 * 59.99875 * 22 21 2 42 42 H 1.08995 * 109.46939 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46689 * 299.99951 * 23 22 21 44 44 H 1.08997 * 109.47342 * 59.99837 * 24 23 22 45 45 H 1.08997 * 109.47284 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47696 * 300.00324 * 25 24 23 47 47 H 1.09000 * 109.47310 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 1.4354 2.2976 1.4811 5 8 0.0169 2.3711 1.4397 6 6 2.1333 3.9626 1.3044 7 6 1.7137 4.8103 2.4778 8 6 0.5428 5.5493 2.4088 9 6 0.1470 6.3223 3.4764 10 6 0.9421 6.3700 4.6365 11 6 0.5490 7.1660 5.7370 12 1 1.2897 7.5231 6.4371 13 6 -0.8000 7.4911 5.9190 14 7 -1.7276 6.8002 5.3077 15 14 -1.2761 8.9115 7.0349 16 1 -0.0499 9.5267 7.6036 17 1 -2.0225 9.9281 6.2510 18 1 -2.1342 8.4086 8.1376 19 6 2.1315 5.6202 4.6930 20 6 2.5043 4.8489 3.6160 21 6 2.0400 -0.7213 -1.2492 22 6 1.5300 -2.1638 -1.2492 23 6 2.0400 -2.8851 0.0000 24 6 1.5300 -2.1638 1.2493 25 6 2.0401 -0.7213 1.2493 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.2209 3.8992 1.2721 32 1 1.7679 4.4137 0.3819 33 1 -0.0631 5.5150 1.5154 34 1 -0.7678 6.8938 3.4223 35 1 -2.6626 7.0258 5.4336 36 1 2.7494 5.6499 5.5784 37 1 3.4165 4.2723 3.6573 38 1 3.1300 -0.7209 -1.2494 39 1 1.6767 -0.2075 -2.1392 40 1 1.8930 -2.6775 -2.1394 41 1 0.4401 -2.1638 -1.2492 42 1 1.6770 -3.9128 -0.0002 43 1 3.1300 -2.8850 0.0000 44 1 0.4400 -2.1637 1.2493 45 1 1.8937 -2.6773 2.1393 46 1 3.1301 -0.7213 1.2492 47 1 1.6764 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414289068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:49 Heat of formation + Delta-G solvation = -53.382082 kcal Electronic energy + Delta-G solvation = -24563.947986 eV Core-core repulsion = 21222.436176 eV Total energy + Delta-G solvation = -3341.511810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.53602 -37.61706 -35.19555 -33.99120 -33.31216 -31.24716 -30.92638 -29.31112 -27.81095 -27.13470 -26.50702 -23.93264 -22.81331 -21.35377 -21.01896 -20.03586 -18.45619 -17.32442 -17.00415 -15.90178 -15.44547 -15.30126 -14.95929 -14.61804 -14.25849 -14.16534 -13.96353 -13.82846 -13.50266 -13.25529 -12.76704 -12.63107 -12.47336 -12.22903 -12.02417 -11.96107 -11.75817 -11.61729 -11.56809 -11.27651 -11.21180 -11.08529 -11.04513 -10.97562 -10.65361 -10.46891 -10.36462 -10.26438 -10.11774 -9.75145 -9.45105 -9.33919 -9.07450 -7.88964 -7.46801 -7.19135 -6.77975 -4.36125 1.82241 2.77473 3.03822 3.06417 3.09367 3.12048 3.29586 3.91277 4.21103 4.51894 4.54447 4.61056 4.61592 4.94805 5.11241 5.15947 5.25731 5.30322 5.39991 5.45589 5.51473 5.57810 5.65575 5.67409 5.73256 5.74128 5.87764 5.90401 5.91263 5.98148 6.03710 6.11104 6.16291 6.26487 6.30240 6.33309 6.34290 6.39224 6.59692 6.94006 7.04526 7.24259 7.32418 7.58414 7.80836 8.03046 8.06864 8.25924 8.61500 8.86203 8.94348 10.15677 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.002583 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.726724 B =10837.742893 C =11012.000280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.032 4.032 3 C -0.453 4.453 4 S 1.221 4.779 5 O -0.835 6.835 6 C -0.361 4.361 7 C -0.206 4.206 8 C -0.086 4.086 9 C -0.164 4.164 10 C 0.112 3.888 11 C -0.458 4.458 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.787 5.787 15 Si 0.908 3.092 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.274 1.274 19 C -0.226 4.226 20 C -0.082 4.082 21 C -0.104 4.104 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.118 4.118 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 -15.095 -8.422 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.033 4.033 3 C -0.588 4.588 4 S 1.423 4.577 5 O -0.830 6.830 6 C -0.498 4.498 7 C -0.209 4.209 8 C -0.105 4.105 9 C -0.183 4.183 10 C 0.109 3.891 11 C -0.488 4.488 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.411 5.411 15 Si 0.732 3.268 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.199 1.199 19 C -0.246 4.246 20 C -0.102 4.102 21 C -0.142 4.142 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.589 -15.524 -7.778 18.950 hybrid contribution -1.029 1.717 -1.644 2.590 sum 6.561 -13.807 -9.422 17.957 Atomic orbital electron populations 1.22407 0.94242 1.02040 1.04259 1.20072 0.95791 0.91705 0.95686 1.27901 1.08311 1.04314 1.18262 1.70686 0.93039 0.92682 1.01287 1.93103 1.25349 1.83944 1.80651 1.26169 1.07293 1.14419 1.01931 1.18265 0.99923 1.07528 0.95200 1.20549 0.95034 0.97289 0.97661 1.21300 1.01822 1.02672 0.92524 1.17669 0.90469 0.88970 0.91992 1.19661 0.92734 1.27505 1.08874 0.90206 1.25966 0.96507 0.96153 0.95833 1.69847 1.01876 1.33597 1.35815 0.86270 0.79396 0.81187 0.79935 1.18322 1.19714 1.19923 1.20958 1.01363 1.03933 0.98329 1.20373 0.97412 0.99023 0.93369 1.21600 1.00358 0.95085 0.97205 1.21594 1.01151 0.95659 0.97623 1.21522 1.00661 0.98561 0.94800 1.21581 1.01320 0.95428 0.97668 1.21741 1.01132 0.95638 0.97082 0.92200 0.89339 0.93326 0.87258 0.90299 0.87674 0.90873 0.89846 0.86429 0.90766 0.88646 0.88741 0.91960 0.92484 0.92436 0.91727 0.92364 0.92050 0.91537 0.91774 0.90991 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 7.26 37.16 0.27 -2.02 16 2 C -0.03 -0.35 0.54 -154.50 -0.08 -0.43 16 3 C -0.45 -5.25 4.93 37.16 0.18 -5.07 16 4 S 1.22 18.28 11.38 -107.50 -1.22 17.06 16 5 O -0.84 -17.62 15.30 -35.23 -0.54 -18.16 16 6 C -0.36 -6.02 6.04 36.01 0.22 -5.81 16 7 C -0.21 -4.46 5.16 -104.33 -0.54 -4.99 16 8 C -0.09 -2.13 9.67 -39.66 -0.38 -2.51 16 9 C -0.16 -4.40 8.70 -38.87 -0.34 -4.74 16 10 C 0.11 2.99 5.57 -106.82 -0.60 2.40 16 11 C -0.46 -12.11 9.05 -37.74 -0.34 -12.45 16 12 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 13 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 14 N -0.79 -20.78 10.95 55.55 0.61 -20.17 16 15 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 20 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 21 C -0.10 -0.99 4.73 -26.73 -0.13 -1.12 16 22 C -0.12 -1.05 5.65 -26.73 -0.15 -1.20 16 23 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 24 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 25 C -0.12 -1.12 4.49 -26.73 -0.12 -1.24 16 26 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 27 H 0.09 1.42 5.21 -51.93 -0.27 1.15 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.38 8.08 -51.92 -0.42 0.96 16 32 H 0.07 1.25 8.08 -51.92 -0.42 0.84 16 33 H 0.08 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.12 3.29 6.16 -52.49 -0.32 2.96 16 35 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 36 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 37 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.66 6.91 -51.93 -0.36 0.30 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -31.71 370.43 -11.53 -43.23 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.75 Total: 6.42 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: -3.17 Total: -47.59 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.61 Total: -20.17 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.54 Total: -18.16 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 18.28 SS G_CDS: -1.22 Total: 17.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.71 -11.53 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414289068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.150 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds